Validation Report - ggdag@0.2.13
Context
This report is fully automated and builds on rhub/ref-image image. Documents the installation of this package on an open source R environment, focusing on:
- Installation environment description
- Testing coverage
It is limited to assess whether unit tests and documentation are present and can execute without error. An assessment would be required that the tests and documentation are meaningful.
Package ggdag
Metric based risk assessment
The following metrics are derived from the riskmetric R package.
| has_news | 1 |
| news_current | TRUE |
| exported_namespace | 101 |
| has_vignettes | 6 |
| export_help | 101 |
| has_website | TRUE |
| has_maintainer | Malcolm Barrett malcolmbarrett@gmail.com |
| bugs_status | subscript out of bounds |
| assess_size_codebase | 2852 |
| has_source_control | https://github.com/r-causal/ggdag |
| has_bug_reports_url | 1 |
| downloads_1yr | 50878 |
| reverse_dependencies | 7 |
| has_examples | 0.9791667 |
| dependencies | 14 |
| license | MIT + file LICENSE |
Package general assessment: Coverage, check results, size, download the last year, reverse dependencies and number of dependencies.
Dependencies
Overall the package has these dependencies:
| package | type | |
|---|---|---|
| 1 | dagitty | Imports |
| 2 | dplyr | Imports |
| 3 | forcats | Imports |
| 4 | ggplot2 (>= 3.0.0) | Imports |
| 5 | ggraph (>= 2.0.0) | Imports |
| 6 | ggrepel | Imports |
| 7 | igraph | Imports |
| 8 | magrittr | Imports |
| 9 | pillar | Imports |
| 10 | purrr | Imports |
| 11 | rlang | Imports |
| 12 | stringr | Imports |
| 13 | tibble | Imports |
| 14 | tidygraph | Imports |
Package dependencies
Reverse dependencies
Overall the package has 7 reverse dependencies:
causalPAF, dagwood, epicmodel, episensr, mvGPS, performance, see
Namespace
Overall the package has 101 exported objects. 100 are documented:
%>% activate_collider_paths adjust_for
FALSE TRUE TRUE
as_tidy_dagitty butterfly_bias collider_triangle
TRUE TRUE TRUE
confounder_triangle control_for coords2df
TRUE TRUE TRUE
coords2list dag dag_adjustment_sets
TRUE TRUE TRUE
dag_label dag_paths dagify
TRUE TRUE TRUE
expand_plot filter geom_dag_collider_edges
TRUE TRUE TRUE
geom_dag_edges geom_dag_edges_arc geom_dag_edges_diagonal
TRUE TRUE TRUE
geom_dag_edges_fan geom_dag_edges_link geom_dag_label
TRUE TRUE TRUE
geom_dag_label_repel geom_dag_node geom_dag_point
TRUE TRUE TRUE
geom_dag_text geom_dag_text_repel ggdag
TRUE TRUE TRUE
ggdag_adjacent ggdag_adjust ggdag_adjustment_set
TRUE TRUE TRUE
ggdag_ancestors ggdag_butterfly_bias ggdag_canonical
TRUE TRUE TRUE
ggdag_children ggdag_classic ggdag_collider
TRUE TRUE TRUE
ggdag_collider_triangle ggdag_confounder_triangle ggdag_dconnected
TRUE TRUE TRUE
ggdag_descendants ggdag_drelationship ggdag_dseparated
TRUE TRUE TRUE
ggdag_equivalent_class ggdag_equivalent_dags ggdag_exogenous
TRUE TRUE TRUE
ggdag_instrumental ggdag_m_bias ggdag_markov_blanket
TRUE TRUE TRUE
ggdag_mediation_triangle ggdag_parents ggdag_paths
TRUE TRUE TRUE
ggdag_paths_fan ggdag_status has_labels
TRUE TRUE TRUE
is_collider is_confounder is_downstream_collider
TRUE TRUE TRUE
is.tidy_dagitty label label<-
TRUE TRUE TRUE
m_bias mediation_triangle node_adjacent
TRUE TRUE TRUE
node_ancestors node_canonical node_children
TRUE TRUE TRUE
node_collider node_dconnected node_descendants
TRUE TRUE TRUE
node_drelationship node_dseparated node_equivalent_class
TRUE TRUE TRUE
node_equivalent_dags node_exogenous node_instrumental
TRUE TRUE TRUE
node_markov_blanket node_parents node_status
TRUE TRUE TRUE
pull_dag pull_dag_data remove_axes
TRUE TRUE TRUE
remove_grid scale_adjusted scale_dag
TRUE TRUE TRUE
simulate_data tbl_df.tidy_daggity theme_dag
TRUE TRUE TRUE
theme_dag_blank theme_dag_gray theme_dag_gray_grid
TRUE TRUE TRUE
theme_dag_grey theme_dag_grey_grid theme_dag_grid
TRUE TRUE TRUE
tidy_dagitty time_ordered_coords update_dag
TRUE TRUE TRUE
update_dag_data<- update_dag<-
TRUE TRUE Examples
There are 47 help pages with examples, from 48 (97.92 %).
NEWS
The package has NEWS file and it is current.
License
The package uses .
Installation environment
System Info
| Field | Value |
|---|---|
| Image | rhub/ref-image |
| OS | Ubuntu 24.04.2 LTS |
| Platform | x86_64-pc-linux-gnu |
| System | x86_64, linux-gnu |
| Execution Time | 2025-03-24 03:37:01 UTC |
System information. Table about the system used to check the package.
R Session Info
Information about the R environment and capabilities:
R version 4.4.3 (2025-02-28)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 24.04.2 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so; LAPACK version 3.12.0
locale:
[1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8
[4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8
[7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C
time zone: UTC
tzcode source: system (glibc)
attached base packages:
[1] tools stats graphics grDevices utils datasets methods
[8] base
loaded via a namespace (and not attached):
[1] riskreports_0.0.0.9003 compiler_4.4.3 fastmap_1.2.0
[4] cli_3.6.4 htmltools_0.5.8.1 yaml_2.3.10
[7] rmarkdown_2.29 knitr_1.50 jsonlite_1.9.1
[10] xfun_0.51 digest_0.6.37 rlang_1.1.5
[13] evaluate_1.0.3 Platform used:
OS.type file.sep dynlib.ext GUI endian pkgType path.sep
"unix" "/" ".so" "X11" "little" "source" ":"
r_arch
"" R’s capabilities:
jpeg png tiff tcltk X11 aqua
TRUE TRUE TRUE TRUE FALSE FALSE
http/ftp sockets libxml fifo cledit iconv
TRUE TRUE FALSE TRUE FALSE TRUE
NLS Rprof profmem cairo ICU long.double
TRUE TRUE TRUE TRUE TRUE TRUE
libcurl
TRUE External software:
zlib
"1.3"
bzlib
"1.0.8, 13-Jul-2019"
xz
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libdeflate
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PCRE
"10.42 2022-12-11"
ICU
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TRE
"TRE 0.8.0 R_fixes (BSD)"
iconv
"glibc 2.39"
readline
"8.2"
BLAS
"/usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3" Graphics external software:
cairo cairoFT pango
"1.18.0" "" "1.52.1"
libpng jpeg libtiff
"1.6.43" "8.0" "LIBTIFF, Version 4.5.1" Numerical characteristics of the machine:
double.eps double.neg.eps double.xmin
2.220446e-16 1.110223e-16 2.225074e-308
double.xmax double.base double.digits
1.797693e+308 2.000000e+00 5.300000e+01
double.rounding double.guard double.ulp.digits
5.000000e+00 0.000000e+00 -5.200000e+01
double.neg.ulp.digits double.exponent double.min.exp
-5.300000e+01 1.100000e+01 -1.022000e+03
double.max.exp integer.max sizeof.long
1.024000e+03 2.147484e+09 8.000000e+00
sizeof.longlong sizeof.longdouble sizeof.pointer
8.000000e+00 1.600000e+01 8.000000e+00
sizeof.time_t longdouble.eps longdouble.neg.eps
8.000000e+00 1.084202e-19 5.421011e-20
longdouble.digits longdouble.rounding longdouble.guard
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longdouble.ulp.digits longdouble.neg.ulp.digits longdouble.exponent
-6.300000e+01 -6.400000e+01 1.500000e+01
longdouble.min.exp longdouble.max.exp
-1.638200e+04 1.638400e+04 Random number generation process:
[1] "Mersenne-Twister" "Inversion" "Rejection" Information about the environment
Environmental and options variables affect how package checks and software in it might behave. Here is the environmental variables when running this report
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PHARMAPKGS_EXCLUDED_METRICS
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$bitmapType
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$callr.condition_handler_cli_message
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