Validation Report - ggalign@1.0.0
Context
This report is fully automated and builds on rhub/ref-image image. Documents the installation of this package on an open source R environment, focusing on:
- Installation environment description
- Testing coverage
It is limited to assess whether unit tests and documentation are present and can execute without error. An assessment would be required that the tests and documentation are meaningful.
Package ggalign
Metric based risk assessment
The following metrics are derived from the riskmetric R package.
| has_news | 1 |
| news_current | TRUE |
| exported_namespace | 143 |
| has_vignettes | 0 |
| export_help | 145 |
| has_website | TRUE |
| has_maintainer | Yun Peng yunyunp96@163.com |
| bugs_status | 0.9 |
| assess_size_codebase | 13828 |
| has_source_control | https://github.com/Yunuuuu/ggalign |
| has_bug_reports_url | 1 |
| downloads_1yr | 4490 |
| reverse_dependencies | 0 |
| has_examples | 0.9831933 |
| dependencies | 11 |
| license | MIT + file LICENSE |
Package general assessment: Coverage, check results, size, download the last year, reverse dependencies and number of dependencies.
Dependencies
Overall the package has these dependencies:
| package | type | |
|---|---|---|
| 1 | ggplot2 (>= 3.5.0) | Depends |
| 2 | cli | Imports |
| 3 | grDevices | Imports |
| 4 | grid | Imports |
| 5 | gtable | Imports |
| 6 | lifecycle | Imports |
| 7 | methods | Imports |
| 8 | rlang | Imports |
| 9 | stats | Imports |
| 10 | utils | Imports |
| 11 | vctrs (>= 0.5.0) | Imports |
Package dependencies
Reverse dependencies
Overall the package has 0 reverse dependencies:
Namespace
Overall the package has 143 exported objects. 143 are documented:
.link_draw .mark_draw active
TRUE TRUE TRUE
align Align align_dendro
TRUE TRUE TRUE
align_group align_hclust align_kmeans
TRUE TRUE TRUE
align_order align_order2 align_panel
TRUE TRUE TRUE
align_phylo align_plots alignpatch
TRUE TRUE TRUE
anno_bottom anno_left anno_right
TRUE TRUE TRUE
anno_top area circle_continuous
TRUE TRUE TRUE
circle_discrete circle_layout circle_switch
TRUE TRUE TRUE
continuous_limits coord_circle cross_link
TRUE TRUE TRUE
cross_mark cross_none draw_key_gshape
TRUE TRUE TRUE
element_curve element_polygon element_rep
TRUE TRUE TRUE
element_rep_len element_vec element_vec_recycle
TRUE TRUE TRUE
element_vec_rep element_vec_rep_each element_vec_slice
TRUE TRUE TRUE
facet_sector fortify_data_frame fortify_matrix
TRUE TRUE TRUE
free_align free_border free_guide
TRUE TRUE TRUE
free_lab free_space free_vp
TRUE TRUE TRUE
geom_draw geom_gshape geom_pie
TRUE TRUE TRUE
geom_rect3d geom_subrect geom_subtile
TRUE TRUE TRUE
geom_tile3d ggalign ggalign_attr
TRUE TRUE TRUE
ggalign_data_set ggalign_lvls ggalign_stat
TRUE TRUE TRUE
ggalignGrob ggcross ggfree
TRUE TRUE TRUE
ggheatmap ggmark ggoncoplot
TRUE TRUE TRUE
ggpanel ggside ggupset
TRUE TRUE TRUE
ggwrap gpar hclust2
TRUE TRUE TRUE
heatmap_layout hmanno inset
TRUE TRUE TRUE
is_circle_layout is_ggheatmap is_heatmap_layout
TRUE TRUE TRUE
is_layout is_quad_layout is_stack_cross
TRUE TRUE TRUE
is_stack_layout layer_order layout_annotation
TRUE TRUE TRUE
layout_design layout_title link_draw
TRUE TRUE TRUE
link_line link_tetragon mark_draw
TRUE TRUE TRUE
mark_line mark_tetragon mark_triangle
TRUE TRUE TRUE
memo_order new_tune no_expansion
TRUE TRUE TRUE
order2 pair_links patch
TRUE TRUE TRUE
patch_titles quad_active quad_alignb
TRUE TRUE TRUE
quad_alignh quad_alignv quad_anno
TRUE TRUE TRUE
quad_continuous quad_discrete quad_free
TRUE TRUE TRUE
quad_init quad_layout quad_switch
TRUE TRUE TRUE
range_link raster_magick read_example
TRUE TRUE TRUE
scale_gshape_manual scheme_align scheme_data
TRUE TRUE TRUE
scheme_theme stack_active stack_align
TRUE TRUE TRUE
stack_alignh stack_alignv stack_continuous
TRUE TRUE TRUE
stack_continuoush stack_continuousv stack_cross
TRUE TRUE TRUE
stack_crossh stack_crossv stack_discrete
TRUE TRUE TRUE
stack_discreteh stack_discretev stack_free
TRUE TRUE TRUE
stack_freeh stack_freev stack_horizontal
TRUE TRUE TRUE
stack_layout stack_switch stack_vertical
TRUE TRUE TRUE
theme_no_axes tune tune_data
TRUE TRUE TRUE
unit with_quad
TRUE TRUE Examples
There are 117 help pages with examples, from 119 (98.32 %).
NEWS
The package has NEWS file and it is current.
License
The package uses .
Installation environment
System Info
| Field | Value |
|---|---|
| Image | rhub/ref-image |
| OS | Ubuntu 24.04.2 LTS |
| Platform | x86_64-pc-linux-gnu |
| System | x86_64, linux-gnu |
| Execution Time | 2025-03-24 03:34:16 UTC |
System information. Table about the system used to check the package.
R Session Info
Information about the R environment and capabilities:
R version 4.4.3 (2025-02-28)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 24.04.2 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so; LAPACK version 3.12.0
locale:
[1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8
[4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8
[7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C
time zone: UTC
tzcode source: system (glibc)
attached base packages:
[1] tools stats graphics grDevices utils datasets methods
[8] base
loaded via a namespace (and not attached):
[1] riskreports_0.0.0.9003 compiler_4.4.3 fastmap_1.2.0
[4] cli_3.6.4 htmltools_0.5.8.1 yaml_2.3.10
[7] rmarkdown_2.29 knitr_1.50 jsonlite_1.9.1
[10] xfun_0.51 digest_0.6.37 rlang_1.1.5
[13] evaluate_1.0.3 Platform used:
OS.type file.sep dynlib.ext GUI endian pkgType path.sep
"unix" "/" ".so" "X11" "little" "source" ":"
r_arch
"" R’s capabilities:
jpeg png tiff tcltk X11 aqua
TRUE TRUE TRUE TRUE FALSE FALSE
http/ftp sockets libxml fifo cledit iconv
TRUE TRUE FALSE TRUE FALSE TRUE
NLS Rprof profmem cairo ICU long.double
TRUE TRUE TRUE TRUE TRUE TRUE
libcurl
TRUE External software:
zlib
"1.3"
bzlib
"1.0.8, 13-Jul-2019"
xz
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libdeflate
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PCRE
"10.42 2022-12-11"
ICU
"74.2"
TRE
"TRE 0.8.0 R_fixes (BSD)"
iconv
"glibc 2.39"
readline
"8.2"
BLAS
"/usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3" Graphics external software:
cairo cairoFT pango
"1.18.0" "" "1.52.1"
libpng jpeg libtiff
"1.6.43" "8.0" "LIBTIFF, Version 4.5.1" Numerical characteristics of the machine:
double.eps double.neg.eps double.xmin
2.220446e-16 1.110223e-16 2.225074e-308
double.xmax double.base double.digits
1.797693e+308 2.000000e+00 5.300000e+01
double.rounding double.guard double.ulp.digits
5.000000e+00 0.000000e+00 -5.200000e+01
double.neg.ulp.digits double.exponent double.min.exp
-5.300000e+01 1.100000e+01 -1.022000e+03
double.max.exp integer.max sizeof.long
1.024000e+03 2.147484e+09 8.000000e+00
sizeof.longlong sizeof.longdouble sizeof.pointer
8.000000e+00 1.600000e+01 8.000000e+00
sizeof.time_t longdouble.eps longdouble.neg.eps
8.000000e+00 1.084202e-19 5.421011e-20
longdouble.digits longdouble.rounding longdouble.guard
6.400000e+01 5.000000e+00 0.000000e+00
longdouble.ulp.digits longdouble.neg.ulp.digits longdouble.exponent
-6.300000e+01 -6.400000e+01 1.500000e+01
longdouble.min.exp longdouble.max.exp
-1.638200e+04 1.638400e+04 Random number generation process:
[1] "Mersenne-Twister" "Inversion" "Rejection" Information about the environment
Environmental and options variables affect how package checks and software in it might behave. Here is the environmental variables when running this report
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