Validation Report - geos@0.2.4

Context

This report is fully automated and builds on rhub/ref-image image. Documents the installation of this package on an open source R environment, focusing on:

  • Installation environment description
  • Testing coverage

It is limited to assess whether unit tests and documentation are present and can execute without error. An assessment would be required that the tests and documentation are meaningful.

Package geos

Metric based risk assessment

The following metrics are derived from the riskmetric R package.

has_news 1
news_current TRUE
exported_namespace 200
has_vignettes 0
export_help 200
has_website TRUE
has_maintainer Dewey Dunnington
bugs_status 0.8
assess_size_codebase 1937
has_source_control https://github.com/paleolimbot/geos/
has_bug_reports_url 1
downloads_1yr 13545
reverse_dependencies 8
has_examples 1
dependencies 4
license MIT + file LICENSE

Package general assessment: Coverage, check results, size, download the last year, reverse dependencies and number of dependencies.

Dependencies

Overall the package has these dependencies:

package type
1 libgeos (>= 3.8.1-4) Imports
2 wk (>= 0.4.1) Imports
3 libgeos LinkingTo
4 wk LinkingTo

Package dependencies

Reverse dependencies

Overall the package has 8 reverse dependencies:

bigDM, centerline, fasterize, geomander, ggredist, hydroloom, osdatahub, redistmetrics

Namespace

Overall the package has 200 exported objects. 200 are documented:

                   as_geos_geometry                     as_geos_strtree 
                               TRUE                                TRUE 
                    as_geos_type_id                           geos_area 
                               TRUE                                TRUE 
                 geos_basic_strtree        geos_basic_strtree_finalized 
                               TRUE                                TRUE 
          geos_basic_strtree_insert            geos_basic_strtree_query 
                               TRUE                                TRUE 
  geos_basic_strtree_query_filtered             geos_basic_strtree_size 
                               TRUE                                TRUE 
                      geos_boundary                         geos_buffer 
                               TRUE                                TRUE 
                 geos_buffer_params                     geos_build_area 
                               TRUE                                TRUE 
                      geos_centroid         geos_clearance_line_between 
                               TRUE                                TRUE 
                  geos_clip_by_rect                          geos_clone 
                               TRUE                                TRUE 
                  geos_concave_hull       geos_concave_hull_of_polygons 
                               TRUE                                TRUE 
geos_constrained_delaunay_triangles                       geos_contains 
                               TRUE                                TRUE 
                  geos_contains_any                geos_contains_matrix 
                               TRUE                                TRUE 
         geos_contains_properly_any       geos_contains_properly_matrix 
                               TRUE                                TRUE 
                   geos_convex_hull           geos_coordinate_dimension 
                               TRUE                                TRUE 
                geos_coverage_union                     geos_covered_by 
                               TRUE                                TRUE 
                geos_covered_by_any              geos_covered_by_matrix 
                               TRUE                                TRUE 
                        geos_covers                     geos_covers_any 
                               TRUE                                TRUE 
                 geos_covers_matrix               geos_create_rectangle 
                               TRUE                                TRUE 
                       geos_crosses                    geos_crosses_any 
                               TRUE                                TRUE 
                geos_crosses_matrix                 geos_delaunay_edges 
                               TRUE                                TRUE 
            geos_delaunay_triangles                        geos_densify 
                               TRUE                                TRUE 
                    geos_difference                geos_difference_prec 
                               TRUE                                TRUE 
                     geos_dimension                       geos_disjoint 
                               TRUE                                TRUE 
                  geos_disjoint_any                geos_disjoint_matrix 
                               TRUE                                TRUE 
                      geos_distance               geos_distance_frechet 
                               TRUE                                TRUE 
            geos_distance_hausdorff               geos_distance_indexed 
                               TRUE                                TRUE 
                         geos_empty                       geos_envelope 
                               TRUE                                TRUE 
                  geos_envelope_rct                         geos_equals 
                               TRUE                                TRUE 
                    geos_equals_any                   geos_equals_exact 
                               TRUE                                TRUE 
              geos_equals_exact_any            geos_equals_exact_matrix 
                               TRUE                                TRUE 
                 geos_equals_matrix                         geos_extent 
                               TRUE                                TRUE 
                      geos_geometry                     geos_geometry_n 
                               TRUE                                TRUE 
               geos_geometry_writer                          geos_has_z 
                               TRUE                                TRUE 
                  geos_hilbert_code                     geos_inner_join 
                               TRUE                                TRUE 
               geos_inner_join_keys                    geos_interpolate 
                               TRUE                                TRUE 
        geos_interpolate_normalized                   geos_intersection 
                               TRUE                                TRUE 
             geos_intersection_prec                     geos_intersects 
                               TRUE                                TRUE 
                geos_intersects_any              geos_intersects_matrix 
                               TRUE                                TRUE 
                  geos_is_clockwise                      geos_is_closed 
                               TRUE                                TRUE 
                      geos_is_empty                        geos_is_ring 
                               TRUE                                TRUE 
                     geos_is_simple                       geos_is_valid 
                               TRUE                                TRUE 
               geos_is_valid_detail             geos_is_within_distance 
                               TRUE                                TRUE 
     geos_largest_empty_circle_spec              geos_largest_empty_crc 
                               TRUE                                TRUE 
                        geos_length                     geos_line_merge 
                               TRUE                                TRUE 
           geos_line_merge_directed                geos_make_collection 
                               TRUE                                TRUE 
               geos_make_linestring                     geos_make_point 
                               TRUE                                TRUE 
                  geos_make_polygon                     geos_make_valid 
                               TRUE                                TRUE 
             geos_make_valid_params  geos_maximum_inscribed_circle_spec 
                               TRUE                                TRUE 
         geos_maximum_inscribed_crc                    geos_merge_lines 
                               TRUE                                TRUE 
       geos_minimum_bounding_circle           geos_minimum_bounding_crc 
                               TRUE                                TRUE 
             geos_minimum_clearance         geos_minimum_clearance_line 
                               TRUE                                TRUE 
     geos_minimum_rotated_rectangle                  geos_minimum_width 
                               TRUE                                TRUE 
                       geos_nearest                geos_nearest_frechet 
                               TRUE                                TRUE 
             geos_nearest_hausdorff                geos_nearest_indexed 
                               TRUE                                TRUE 
                          geos_node                      geos_normalize 
                               TRUE                                TRUE 
               geos_num_coordinates                 geos_num_geometries 
                               TRUE                                TRUE 
            geos_num_interior_rings                      geos_num_rings 
                               TRUE                                TRUE 
                  geos_offset_curve              geos_orientation_index 
                               TRUE                                TRUE 
                      geos_overlaps                   geos_overlaps_any 
                               TRUE                                TRUE 
               geos_overlaps_matrix                      geos_point_end 
                               TRUE                                TRUE 
                       geos_point_n               geos_point_on_surface 
                               TRUE                                TRUE 
                   geos_point_start          geos_polygon_hull_simplify 
                               TRUE                                TRUE 
                    geos_polygonize           geos_polygonize_cut_edges 
                               TRUE                                TRUE 
               geos_polygonize_full               geos_polygonize_valid 
                               TRUE                                TRUE 
                     geos_precision              geos_prepared_contains 
                               TRUE                                TRUE 
    geos_prepared_contains_properly            geos_prepared_covered_by 
                               TRUE                                TRUE 
               geos_prepared_covers               geos_prepared_crosses 
                               TRUE                                TRUE 
             geos_prepared_disjoint              geos_prepared_distance 
                               TRUE                                TRUE 
           geos_prepared_intersects    geos_prepared_is_within_distance 
                               TRUE                                TRUE 
             geos_prepared_overlaps               geos_prepared_touches 
                               TRUE                                TRUE 
               geos_prepared_within                        geos_project 
                               TRUE                                TRUE 
            geos_project_normalized                   geos_read_geojson 
                               TRUE                                TRUE 
                      geos_read_hex                       geos_read_wkb 
                               TRUE                                TRUE 
                      geos_read_wkt                        geos_read_xy 
                               TRUE                                TRUE 
                        geos_relate                 geos_relate_pattern 
                               TRUE                                TRUE 
         geos_relate_pattern_create           geos_relate_pattern_match 
                               TRUE                                TRUE 
        geos_remove_repeated_points                        geos_reverse 
                               TRUE                                TRUE 
                        geos_ring_n           geos_segment_intersection 
                               TRUE                                TRUE 
                 geos_set_precision                       geos_set_srid 
                               TRUE                                TRUE 
                  geos_shared_paths                       geos_simplify 
                               TRUE                                TRUE 
    geos_simplify_preserve_topology                           geos_snap 
                               TRUE                                TRUE 
                          geos_srid                        geos_strtree 
                               TRUE                                TRUE 
                  geos_strtree_data                  geos_strtree_query 
                               TRUE                                TRUE 
                geos_sym_difference            geos_sym_difference_prec 
                               TRUE                                TRUE 
                       geos_touches                    geos_touches_any 
                               TRUE                                TRUE 
                geos_touches_matrix                   geos_transform_xy 
                               TRUE                                TRUE 
                          geos_type                        geos_type_id 
                               TRUE                                TRUE 
                   geos_unary_union               geos_unary_union_prec 
                               TRUE                                TRUE 
                         geos_union                     geos_union_prec 
                               TRUE                                TRUE 
                 geos_unique_points                         geos_unnest 
                               TRUE                                TRUE 
                       geos_version                  geos_voronoi_edges 
                               TRUE                                TRUE 
              geos_voronoi_polygons                         geos_within 
                               TRUE                                TRUE 
                    geos_within_any                  geos_within_matrix 
                               TRUE                                TRUE 
                 geos_write_geojson                      geos_write_hex 
                               TRUE                                TRUE 
                     geos_write_wkb                      geos_write_wkt 
                               TRUE                                TRUE 
                      geos_write_xy                              geos_x 
                               TRUE                                TRUE 
                          geos_xmax                           geos_xmin 
                               TRUE                                TRUE 
                             geos_y                           geos_ymax 
                               TRUE                                TRUE 
                          geos_ymin                              geos_z 
                               TRUE                                TRUE 
             vec_cast.geos_geometry            vec_ptype2.geos_geometry 
                               TRUE                                TRUE 

Examples

There are 29 help pages with examples, from 29 (100.00 %).

NEWS

The package has NEWS file and it is current.

License

The package uses .

Installation environment

System Info

Field Value
Image rhub/ref-image
OS Ubuntu 24.04.2 LTS
Platform x86_64-pc-linux-gnu
System x86_64, linux-gnu
Execution Time 2025-03-23 03:34:46 UTC

System information. Table about the system used to check the package.

R Session Info

Information about the R environment and capabilities:

R version 4.4.3 (2025-02-28)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 24.04.2 LTS

Matrix products: default
BLAS:   /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so;  LAPACK version 3.12.0

locale:
 [1] LC_CTYPE=C.UTF-8       LC_NUMERIC=C           LC_TIME=C.UTF-8       
 [4] LC_COLLATE=C.UTF-8     LC_MONETARY=C.UTF-8    LC_MESSAGES=C.UTF-8   
 [7] LC_PAPER=C.UTF-8       LC_NAME=C              LC_ADDRESS=C          
[10] LC_TELEPHONE=C         LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C   

time zone: UTC
tzcode source: system (glibc)

attached base packages:
[1] tools     stats     graphics  grDevices utils     datasets  methods  
[8] base     

loaded via a namespace (and not attached):
 [1] riskreports_0.0.0.9003 compiler_4.4.3         fastmap_1.2.0         
 [4] cli_3.6.4              htmltools_0.5.8.1      yaml_2.3.10           
 [7] rmarkdown_2.29         knitr_1.50             jsonlite_1.9.1        
[10] xfun_0.51              digest_0.6.37          rlang_1.1.5           
[13] evaluate_1.0.3        

Platform used:

   OS.type   file.sep dynlib.ext        GUI     endian    pkgType   path.sep 
    "unix"        "/"      ".so"      "X11"   "little"   "source"        ":" 
    r_arch 
        "" 

R’s capabilities:

       jpeg         png        tiff       tcltk         X11        aqua 
       TRUE        TRUE        TRUE        TRUE       FALSE       FALSE 
   http/ftp     sockets      libxml        fifo      cledit       iconv 
       TRUE        TRUE       FALSE        TRUE       FALSE        TRUE 
        NLS       Rprof     profmem       cairo         ICU long.double 
       TRUE        TRUE        TRUE        TRUE        TRUE        TRUE 
    libcurl 
       TRUE 

External software:

                                                     zlib 
                                                    "1.3" 
                                                    bzlib 
                                     "1.0.8, 13-Jul-2019" 
                                                       xz 
                                                  "5.4.5" 
                                               libdeflate 
                                                   "1.19" 
                                                     PCRE 
                                       "10.42 2022-12-11" 
                                                      ICU 
                                                   "74.2" 
                                                      TRE 
                                "TRE 0.8.0 R_fixes (BSD)" 
                                                    iconv 
                                             "glibc 2.39" 
                                                 readline 
                                                    "8.2" 
                                                     BLAS 
"/usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3" 

Graphics external software:

                   cairo                  cairoFT                    pango 
                "1.18.0"                       ""                 "1.52.1" 
                  libpng                     jpeg                  libtiff 
                "1.6.43"                    "8.0" "LIBTIFF, Version 4.5.1" 

Numerical characteristics of the machine:

               double.eps            double.neg.eps               double.xmin 
             2.220446e-16              1.110223e-16             2.225074e-308 
              double.xmax               double.base             double.digits 
            1.797693e+308              2.000000e+00              5.300000e+01 
          double.rounding              double.guard         double.ulp.digits 
             5.000000e+00              0.000000e+00             -5.200000e+01 
    double.neg.ulp.digits           double.exponent            double.min.exp 
            -5.300000e+01              1.100000e+01             -1.022000e+03 
           double.max.exp               integer.max               sizeof.long 
             1.024000e+03              2.147484e+09              8.000000e+00 
          sizeof.longlong         sizeof.longdouble            sizeof.pointer 
             8.000000e+00              1.600000e+01              8.000000e+00 
            sizeof.time_t            longdouble.eps        longdouble.neg.eps 
             8.000000e+00              1.084202e-19              5.421011e-20 
        longdouble.digits       longdouble.rounding          longdouble.guard 
             6.400000e+01              5.000000e+00              0.000000e+00 
    longdouble.ulp.digits longdouble.neg.ulp.digits       longdouble.exponent 
            -6.300000e+01             -6.400000e+01              1.500000e+01 
       longdouble.min.exp        longdouble.max.exp 
            -1.638200e+04              1.638400e+04 

Random number generation process:

[1] "Mersenne-Twister" "Inversion"        "Rejection"       

Information about the environment

Environmental and options variables affect how package checks and software in it might behave. Here is the environmental variables when running this report

_R_CHECK_SYSTEM_CLOCK_
                        FALSE
ACCEPT_EULA             Y
ACTIONS_RUNNER_ACTION_ARCHIVE_CACHE
                        /opt/actionarchivecache
AGENT_TOOLSDIRECTORY    /opt/hostedtoolcache
ANDROID_HOME            /usr/local/lib/android/sdk
ANDROID_NDK             /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_HOME        /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_LATEST_HOME
                        /usr/local/lib/android/sdk/ndk/28.0.13004108
ANDROID_NDK_ROOT        /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_SDK_ROOT        /usr/local/lib/android/sdk
ANT_HOME                /usr/share/ant
AZURE_EXTENSION_DIR     /opt/az/azcliextensions
BOOTSTRAP_HASKELL_NONINTERACTIVE
                        1
BUNDLE_EXT              linux-amd64.deb
CHROME_BIN              /usr/bin/google-chrome
CHROMEWEBDRIVER         /usr/local/share/chromedriver-linux64
CI                      true
CONDA                   /usr/share/miniconda
DEBIAN_FRONTEND         noninteractive
DENO_DOM_PLUGIN         /opt/quarto/bin/tools/x86_64/deno_dom/libplugin.so
DENO_NO_UPDATE_CHECK    1
DENO_TLS_CA_STORE       system,mozilla
DEPLOYMENT_BASEPATH     /opt/runner
DOTNET_MULTILEVEL_LOOKUP
                        0
DOTNET_NOLOGO           1
DOTNET_SKIP_FIRST_TIME_EXPERIENCE
                        1
EDGEWEBDRIVER           /usr/local/share/edge_driver
EDITOR                  vi
GECKOWEBDRIVER          /usr/local/share/gecko_driver
GHCUP_INSTALL_BASE_PREFIX
                        /usr/local
GITHUB_ACTION           __run_2
GITHUB_ACTION_REF       
GITHUB_ACTION_REPOSITORY
                        
GITHUB_ACTIONS          true
GITHUB_ACTOR            llrs-roche
GITHUB_ACTOR_ID         185338939
GITHUB_API_URL          https://api.github.com
GITHUB_BASE_REF         
GITHUB_ENV              /home/runner/work/_temp/_runner_file_commands/set_env_8d92b383-fa60-4724-ab24-84d85ac603eb
GITHUB_EVENT_NAME       schedule
GITHUB_EVENT_PATH       /home/runner/work/_temp/_github_workflow/event.json
GITHUB_GRAPHQL_URL      https://api.github.com/graphql
GITHUB_HEAD_REF         
GITHUB_JOB              main
GITHUB_OUTPUT           /home/runner/work/_temp/_runner_file_commands/set_output_8d92b383-fa60-4724-ab24-84d85ac603eb
GITHUB_PATH             /home/runner/work/_temp/_runner_file_commands/add_path_8d92b383-fa60-4724-ab24-84d85ac603eb
GITHUB_REF              refs/heads/main
GITHUB_REF_NAME         main
GITHUB_REF_PROTECTED    false
GITHUB_REF_TYPE         branch
GITHUB_REPOSITORY       pharmaR/pharmapkgs
GITHUB_REPOSITORY_ID    798326913
GITHUB_REPOSITORY_OWNER
                        pharmaR
GITHUB_REPOSITORY_OWNER_ID
                        42115094
GITHUB_RETENTION_DAYS   90
GITHUB_RUN_ATTEMPT      1
GITHUB_RUN_ID           14015082824
GITHUB_RUN_NUMBER       143
GITHUB_SERVER_URL       https://github.com
GITHUB_SHA              64d0e91d120a4565890025724d2b8c4decfdb168
GITHUB_STATE            /home/runner/work/_temp/_runner_file_commands/save_state_8d92b383-fa60-4724-ab24-84d85ac603eb
GITHUB_STEP_SUMMARY     /home/runner/work/_temp/_runner_file_commands/step_summary_8d92b383-fa60-4724-ab24-84d85ac603eb
GITHUB_TRIGGERING_ACTOR
                        llrs-roche
GITHUB_WORKFLOW         Update package repositories
GITHUB_WORKFLOW_REF     pharmaR/pharmapkgs/.github/workflows/update-repos.yml@refs/heads/main
GITHUB_WORKFLOW_SHA     64d0e91d120a4565890025724d2b8c4decfdb168
GITHUB_WORKSPACE        /home/runner/work/pharmapkgs/pharmapkgs
GOROOT_1_21_X64         /opt/hostedtoolcache/go/1.21.13/x64
GOROOT_1_22_X64         /opt/hostedtoolcache/go/1.22.12/x64
GOROOT_1_23_X64         /opt/hostedtoolcache/go/1.23.7/x64
GRADLE_HOME             /usr/share/gradle-8.13
HOME                    /home/runner
HOMEBREW_CLEANUP_PERIODIC_FULL_DAYS
                        3650
HOMEBREW_NO_AUTO_UPDATE
                        1
ImageOS                 ubuntu24
ImageVersion            20250316.1.0
INVOCATION_ID           fb4dd380b87a40c3b6a3e1923bdb511f
JAVA_HOME               /usr/lib/jvm/temurin-17-jdk-amd64
JAVA_HOME_11_X64        /usr/lib/jvm/temurin-11-jdk-amd64
JAVA_HOME_17_X64        /usr/lib/jvm/temurin-17-jdk-amd64
JAVA_HOME_21_X64        /usr/lib/jvm/temurin-21-jdk-amd64
JAVA_HOME_8_X64         /usr/lib/jvm/temurin-8-jdk-amd64
JOURNAL_STREAM          8:7572
LANG                    C.UTF-8
LD_LIBRARY_PATH         /opt/R/4.4.3/lib/R/lib:/usr/local/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/temurin-17-jdk-amd64/lib/server:/opt/R/4.4.3/lib/R/lib:/usr/local/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/temurin-17-jdk-amd64/lib/server
LN_S                    ln -s
LOGGER_LOG_LEVEL        DEBUG
MAKE                    make
MEMORY_PRESSURE_WATCH   /sys/fs/cgroup/system.slice/runner-provisioner.service/memory.pressure
MEMORY_PRESSURE_WRITE   c29tZSAyMDAwMDAgMjAwMDAwMAA=
NOT_CRAN                true
NVM_DIR                 /home/runner/.nvm
PAGER                   /usr/bin/pager
PATH                    /snap/bin:/home/runner/.local/bin:/opt/pipx_bin:/home/runner/.cargo/bin:/home/runner/.config/composer/vendor/bin:/usr/local/.ghcup/bin:/home/runner/.dotnet/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
PERFLOG_LOCATION_SETTING
                        RUNNER_PERFLOG
PHARMAPKGS_EXCLUDED_METRICS
                        assess_covr_coverage,assess_r_cmd_check
PHARMAPKGS_LIMIT        100
PHARMAPKGS_PLATFORM     ubuntu-22.04
PHARMAPKGS_R_VERSION    4.4
PHARMAPKGS_REMOTE_REPO
                        https://cloud.r-project.org/
PIPX_BIN_DIR            /opt/pipx_bin
PIPX_HOME               /opt/pipx
PKGCACHE_HTTP_VERSION   2
PKGLOAD_PARENT_TEMPDIR
                        /tmp/Rtmp69KTGW
POWERSHELL_DISTRIBUTION_CHANNEL
                        GitHub-Actions-ubuntu24
PROCESSX_PS1c2952d6d4d5_1742700882
                        YES
PWD                     /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_BIN_PATH         /opt/quarto/bin
QUARTO_DENO             /opt/quarto/bin/tools/x86_64/deno
QUARTO_DOCUMENT_PATH    /home/runner/work/pharmapkgs/pharmapkgs/inst/report
QUARTO_PROFILE          
QUARTO_PROJECT_DIR      /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_PROJECT_ROOT     /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_ROOT             /
QUARTO_SHARE_PATH       /opt/quarto/share
R_ARCH                  
R_BROWSER               xdg-open
R_BZIPCMD               /usr/bin/bzip2
R_DOC_DIR               /opt/R/4.4.3/lib/R/doc
R_GZIPCMD               /usr/bin/gzip
R_HOME                  /opt/R/4.4.3/lib/R
R_INCLUDE_DIR           /opt/R/4.4.3/lib/R/include
R_LIB_FOR_PAK           /opt/R/4.4.3/lib/R/site-library
R_LIBS_SITE             /opt/R/4.4.3/lib/R/site-library
R_LIBS_USER             /home/runner/work/_temp/Library
R_PAPERSIZE             letter
R_PAPERSIZE_USER        letter
R_PDFVIEWER             /usr/bin/xdg-open
R_PLATFORM              x86_64-pc-linux-gnu
R_PRINTCMD              /usr/bin/lpr
R_RD4PDF                times,inconsolata,hyper
R_SESSION_TMPDIR        /tmp/RtmpY06tbV
R_SHARE_DIR             /opt/R/4.4.3/lib/R/share
R_STRIP_SHARED_LIB      strip --strip-unneeded
R_STRIP_STATIC_LIB      strip --strip-debug
R_TEXI2DVICMD           /usr/bin/texi2dvi
R_UNZIPCMD              /usr/bin/unzip
R_ZIPCMD                /usr/bin/zip
RUNNER_ARCH             X64
RUNNER_ENVIRONMENT      github-hosted
RUNNER_NAME             GitHub-Actions-1000000635
RUNNER_OS               Linux
RUNNER_PERFLOG          /home/runner/perflog
RUNNER_TEMP             /home/runner/work/_temp
RUNNER_TOOL_CACHE       /opt/hostedtoolcache
RUNNER_TRACKING_ID      github_764eba70-fbe7-487a-a22e-f91ed0a024cf
RUNNER_USER             runner
RUNNER_WORKSPACE        /home/runner/work/pharmapkgs
SED                     /usr/bin/sed
SELENIUM_JAR_PATH       /usr/share/java/selenium-server.jar
SGX_AESM_ADDR           1
SHLVL                   1
STATS_D                 true
STATS_D_D               true
STATS_D_TC              true
STATS_EXT               true
STATS_EXTP              https://provjobdprod.z13.web.core.windows.net/settings/provjobdsettings-latest/provjobd.data
STATS_PIP               false
STATS_RDCL              true
STATS_TRP               true
STATS_UE                true
STATS_V3PS              true
STATS_VMD               true
STATS_VMFE              true
SWIFT_PATH              /usr/share/swift/usr/bin
SYSTEMD_EXEC_PID        836
TAR                     /usr/bin/tar
TZ                      UTC
USER                    runner
VCPKG_INSTALLATION_ROOT
                        /usr/local/share/vcpkg
XDG_CONFIG_HOME         /home/runner/.config
XDG_RUNTIME_DIR         /run/user/1001

These are the options set to generate the report:

$add.smooth
[1] TRUE

$bitmapType
[1] "cairo"

$browser
[1] "xdg-open"

$browserNLdisabled
[1] FALSE

$callr.condition_handler_cli_message
function (msg) 
{
    custom_handler <- getOption("cli.default_handler")
    if (is.function(custom_handler)) {
        custom_handler(msg)
    }
    else {
        cli_server_default(msg)
    }
}
<bytecode: 0x557786501330>
<environment: namespace:cli>

$catch.script.errors
[1] FALSE

$CBoundsCheck
[1] FALSE

$check.bounds
[1] FALSE

$citation.bibtex.max
[1] 1

$continue
[1] "+ "

$contrasts
        unordered           ordered 
"contr.treatment"      "contr.poly" 

$covr.record_tests
[1] TRUE

$defaultPackages
[1] "datasets"  "utils"     "grDevices" "graphics"  "stats"     "methods"  

$demo.ask
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$deparse.cutoff
[1] 60

$device
function (width = 7, height = 7, ...) 
{
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<bytecode: 0x5577859e5678>
<environment: namespace:knitr>

$device.ask.default
[1] FALSE

$digits
[1] 7

$dvipscmd
[1] "dvips"

$echo
[1] FALSE

$editor
[1] "vi"

$encoding
[1] "native.enc"

$example.ask
[1] "default"

$expressions
[1] 5000

$help.search.types
[1] "vignette" "demo"     "help"    

$help.try.all.packages
[1] FALSE

$htmltools.preserve.raw
[1] TRUE

$HTTPUserAgent
[1] "R/4.4.3 R (4.4.3 x86_64-pc-linux-gnu x86_64 linux-gnu) on GitHub Actions"

$internet.info
[1] 2

$keep.parse.data
[1] TRUE

$keep.parse.data.pkgs
[1] FALSE

$keep.source
[1] FALSE

$keep.source.pkgs
[1] FALSE

$knitr.in.progress
[1] TRUE

$locatorBell
[1] TRUE

$mailer
[1] "mailto"

$matprod
[1] "default"

$max.contour.segments
[1] 25000

$max.print
[1] 99999

$menu.graphics
[1] TRUE

$na.action
[1] "na.omit"

$Ncpus
[1] 1

$nwarnings
[1] 50

$OutDec
[1] "."

$pager
[1] "/opt/R/4.4.3/lib/R/bin/pager"

$papersize
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$PCRE_limit_recursion
[1] NA

$PCRE_study
[1] FALSE

$PCRE_use_JIT
[1] TRUE

$pdfviewer
[1] "/usr/bin/xdg-open"

$pkgType
[1] "source"

$printcmd
[1] "/usr/bin/lpr"

$prompt
[1] "> "

$repos
                      CRAN 
"https://cran.rstudio.com" 

$rl_word_breaks
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$rlang_trace_top_env
<environment: R_GlobalEnv>

$scipen
[1] 0

$show.coef.Pvalues
[1] TRUE

$show.error.messages
[1] TRUE

$show.signif.stars
[1] TRUE

$showErrorCalls
[1] TRUE

$showNCalls
[1] 50

$showWarnCalls
[1] FALSE

$str
$str$strict.width
[1] "no"

$str$digits.d
[1] 3

$str$vec.len
[1] 4

$str$list.len
[1] 99

$str$deparse.lines
NULL

$str$drop.deparse.attr
[1] TRUE

$str$formatNum
function (x, ...) 
format(x, trim = TRUE, drop0trailing = TRUE, ...)
<environment: 0x5577859dc688>


$str.dendrogram.last
[1] "`"

$texi2dvi
[1] "/usr/bin/texi2dvi"

$tikzMetricsDictionary
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$timeout
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$try.outFile
A connection with                    
description ""      
class       "file"  
mode        "w+b"   
text        "binary"
opened      "opened"
can read    "yes"   
can write   "yes"   

$ts.eps
[1] 1e-05

$ts.S.compat
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$unzip
[1] "/usr/bin/unzip"

$useFancyQuotes
[1] FALSE

$verbose
[1] FALSE

$warn
[1] 0

$warning.length
[1] 1000

$warnPartialMatchArgs
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$warnPartialMatchAttr
[1] FALSE

$warnPartialMatchDollar
[1] FALSE

$width
[1] 80