Validation Report - geometa@0.9.1
Context
This report is fully automated and builds on rhub/ref-image image. Documents the installation of this package on an open source R environment, focusing on:
- Installation environment description
- Testing coverage
It is limited to assess whether unit tests and documentation are present and can execute without error. An assessment would be required that the tests and documentation are meaningful.
Package geometa
Metric based risk assessment
The following metrics are derived from the riskmetric R package.
| has_news | 0 |
| exported_namespace | 462 |
| has_vignettes | 0 |
| export_help | 462 |
| has_website | TRUE |
| has_maintainer | Emmanuel Blondel emmanuel.blondel1@gmail.com |
| bugs_status | 0.9333333 |
| assess_size_codebase | 17989 |
| has_source_control | https://github.com/eblondel/geometa/wiki |
| has_bug_reports_url | 1 |
| downloads_1yr | 32287 |
| reverse_dependencies | 2 |
| has_examples | 0.45671 |
| dependencies | 8 |
| license | MIT + file LICENSE |
Package general assessment: Coverage, check results, size, download the last year, reverse dependencies and number of dependencies.
Dependencies
Overall the package has these dependencies:
| package | type | |
|---|---|---|
| 1 | methods | Imports |
| 2 | R6 | Imports |
| 3 | XML | Imports |
| 4 | httr | Imports |
| 5 | jsonlite | Imports |
| 6 | keyring | Imports |
| 7 | readr | Imports |
| 8 | crayon | Imports |
Package dependencies
Reverse dependencies
Overall the package has 2 reverse dependencies:
geonapi, ows4R
Namespace
Overall the package has 462 exported objects. 462 are documented:
cacheISOClasses
TRUE
convert_metadata
TRUE
geometa_coverage
TRUE
geometaLogger
TRUE
getClassesInheriting
TRUE
getGeometaOption
TRUE
getGeometaOptions
TRUE
getIANAMimeTypes
TRUE
getISOClasses
TRUE
getISOCodelist
TRUE
getISOCodelists
TRUE
getISOInternalCodelists
TRUE
getISOMetadataNamespace
TRUE
getISOMetadataNamespaces
TRUE
getISOMetadataSchemaFile
TRUE
getISOMetadataSchemas
TRUE
getMappingFormats
TRUE
getMappings
TRUE
getMetadataStandard
TRUE
GMLAbstractCoordinateOperation
TRUE
GMLAbstractCoordinateSystem
TRUE
GMLAbstractCoverage
TRUE
GMLAbstractCRS
TRUE
GMLAbstractCurve
TRUE
GMLAbstractDiscreteCoverage
TRUE
GMLAbstractFeature
TRUE
GMLAbstractGeneralConversion
TRUE
GMLAbstractGeneralDerivedCRS
TRUE
GMLAbstractGeneralOperationParameter
TRUE
GMLAbstractGeneralParameterValue
TRUE
GMLAbstractGeometricAggregate
TRUE
GMLAbstractGeometricPrimitive
TRUE
GMLAbstractGeometry
TRUE
GMLAbstractGML
TRUE
GMLAbstractImplicitGeometry
TRUE
GMLAbstractObject
TRUE
GMLAbstractReferenceableGrid
TRUE
GMLAbstractRing
TRUE
GMLAbstractSingleCRS
TRUE
GMLAbstractSingleOperation
TRUE
GMLAbstractSurface
TRUE
GMLAbstractTimeGeometricPrimitive
TRUE
GMLAbstractTimeObject
TRUE
GMLAbstractTimePrimitive
TRUE
GMLAffineCS
TRUE
GMLBaseUnit
TRUE
GMLCartesianCS
TRUE
GMLCodeType
TRUE
GMLCompoundCRS
TRUE
GMLConventionalUnit
TRUE
GMLConversion
TRUE
GMLCoordinateSystemAxis
TRUE
GMLCOVAbstractCoverage
TRUE
GMLCOVExtension
TRUE
GMLCylindricalCS
TRUE
GMLDefinition
TRUE
GMLDerivedCRS
TRUE
GMLDerivedUnit
TRUE
GMLElement
TRUE
GMLEllipsoidalCS
TRUE
GMLEnvelope
TRUE
GMLEnvelopeWithTimePeriod
TRUE
GMLGeneralGridAxis
TRUE
GMLGeodeticCRS
TRUE
GMLGrid
TRUE
GMLGridCoverage
TRUE
GMLGridEnvelope
TRUE
GMLGridFunction
TRUE
GMLLinearCS
TRUE
GMLLinearRing
TRUE
GMLLineString
TRUE
GMLMultiCurve
TRUE
GMLMultiCurveCoverage
TRUE
GMLMultiPoint
TRUE
GMLMultiPointCoverage
TRUE
GMLMultiSolidCoverage
TRUE
GMLMultiSurface
TRUE
GMLMultiSurfaceCoverage
TRUE
GMLObliqueCartesianCS
TRUE
GMLOperationMethod
TRUE
GMLOperationParameter
TRUE
GMLOperationParameterGroup
TRUE
GMLParameterValue
TRUE
GMLParameterValueGroup
TRUE
GMLPoint
TRUE
GMLPolarCS
TRUE
GMLPolygon
TRUE
GMLProjectedCRS
TRUE
GMLRectifiedGrid
TRUE
GMLRectifiedGridCoverage
TRUE
GMLReferenceableGridByArray
TRUE
GMLReferenceableGridByTransformation
TRUE
GMLReferenceableGridByVectors
TRUE
GMLSphericalCS
TRUE
GMLTemporalCRS
TRUE
GMLTemporalCS
TRUE
GMLTimeCS
TRUE
GMLTimeInstant
TRUE
GMLTimePeriod
TRUE
GMLUnitDefinition
TRUE
GMLUserDefinedCS
TRUE
GMLVerticalCRS
TRUE
GMLVerticalCS
TRUE
INSPIREMetadataValidator
TRUE
ISOAbsoluteExternalPositionalAccuracy
TRUE
ISOAbstractAcquisitionInformation
TRUE
ISOAbstractAggregate
TRUE
ISOAbstractApplicationSchemaInformation
TRUE
ISOAbstractCarrierOfCharacteristics
TRUE
ISOAbstractCatalogue
TRUE
ISOAbstractCitation
TRUE
ISOAbstractCompleteness
TRUE
ISOAbstractConstraints
TRUE
ISOAbstractContentInformation
TRUE
ISOAbstractDataEvaluation
TRUE
ISOAbstractDataQuality
TRUE
ISOAbstractDistribution
TRUE
ISOAbstractExtent
TRUE
ISOAbstractFeatureCatalogue
TRUE
ISOAbstractFeatureType
TRUE
ISOAbstractFormat
TRUE
ISOAbstractGenericName
TRUE
ISOAbstractLineageInformation
TRUE
ISOAbstractLogicalConsistency
TRUE
ISOAbstractMaintenanceInformation
TRUE
ISOAbstractMDContentInformation
TRUE
ISOAbstractMetadata
TRUE
ISOAbstractMetadataExtension
TRUE
ISOAbstractMetaquality
TRUE
ISOAbstractObject
TRUE
ISOAbstractOnlineResource
TRUE
ISOAbstractParameter
TRUE
ISOAbstractParty
TRUE
ISOAbstractPlatform
TRUE
ISOAbstractPortrayalCatalogueInformation
TRUE
ISOAbstractPositionalAccuracy
TRUE
ISOAbstractPropertyType
TRUE
ISOAbstractQualityElement
TRUE
ISOAbstractReferenceSystem
TRUE
ISOAbstractResourceDescription
TRUE
ISOAbstractResponsibility
TRUE
ISOAbstractResult
TRUE
ISOAbstractRSReferenceSystem
TRUE
ISOAbstractSpatialRepresentation
TRUE
ISOAbstractSpatialResolution
TRUE
ISOAbstractStandardOrderProcess
TRUE
ISOAbstractTemporalAccuracy
TRUE
ISOAbstractTemporalQuality
TRUE
ISOAbstractThematicAccuracy
TRUE
ISOAbstractTypedDate
TRUE
ISOAccuracyOfATimeMeasurement
TRUE
ISOAddress
TRUE
ISOAggregateInformation
TRUE
ISOAggregationDerivation
TRUE
ISOAnchor
TRUE
ISOAngle
TRUE
ISOApplicationSchemaInformation
TRUE
ISOAssociatedResource
TRUE
ISOAssociation
TRUE
ISOAssociationRole
TRUE
ISOAssociationType
TRUE
ISOAttributeGroup
TRUE
ISOAttributes
TRUE
ISOBand
TRUE
ISOBaseBoolean
TRUE
ISOBaseCharacterString
TRUE
ISOBaseDate
TRUE
ISOBaseDateTime
TRUE
ISOBaseDecimal
TRUE
ISOBaseInteger
TRUE
ISOBaseReal
TRUE
ISOBinary
TRUE
ISOBinding
TRUE
ISOBoundAssociationRole
TRUE
ISOBoundFeatureAttribute
TRUE
ISOBoundingPolygon
TRUE
ISOBrowseGraphic
TRUE
ISOCarrierOfCharacteristics
TRUE
ISOCellGeometry
TRUE
ISOCharacterSet
TRUE
ISOCitation
TRUE
ISOCitationSeries
TRUE
ISOClassification
TRUE
ISOCodeDefinition
TRUE
ISOCodelist
TRUE
ISOCodelistCatalogue
TRUE
ISOCodeListDictionary
TRUE
ISOCodeListValue
TRUE
ISOCompletenessCommission
TRUE
ISOCompletenessOmission
TRUE
ISOConceptualConsistency
TRUE
ISOConfidence
TRUE
ISOConformanceResult
TRUE
ISOConstraint
TRUE
ISOConstraints
TRUE
ISOContact
TRUE
ISOCountry
TRUE
ISOCoupledResource
TRUE
ISOCouplingType
TRUE
ISOCoverageContentType
TRUE
ISOCoverageDescription
TRUE
ISOCTCodelistValue
TRUE
ISODataFile
TRUE
ISODataIdentification
TRUE
ISODataIdentification19115_3
TRUE
ISODataIdentification19139
TRUE
ISODataInspection
TRUE
ISODataQuality
TRUE
ISODataQualityAbstractElement
TRUE
ISODataQualityScope
TRUE
ISODataSet
TRUE
ISODatatype
TRUE
ISODate
TRUE
ISODateType
TRUE
ISODCPList
TRUE
ISODefinitionReference
TRUE
ISODefinitionSource
TRUE
ISODescriptiveResult
TRUE
ISODigitalTransferOptions
TRUE
ISODimension
TRUE
ISODimensionNameType
TRUE
ISODistance
TRUE
ISODistribution
TRUE
ISODistributionUnits
TRUE
ISODistributor
TRUE
ISODomainConsistency
TRUE
ISOElementSequence
TRUE
ISOEvaluationMethod
TRUE
ISOEvaluationMethodType
TRUE
ISOExtendedElementInformation
TRUE
ISOExtent
TRUE
ISOFeatureAssociation
TRUE
ISOFeatureAssociation19115_3
TRUE
ISOFeatureAssociation19139
TRUE
ISOFeatureAttribute
TRUE
ISOFeatureCatalogue
TRUE
ISOFeatureCatalogueDescription
TRUE
ISOFeatureOperation
TRUE
ISOFeatureType
TRUE
ISOFeatureType19115_3
TRUE
ISOFeatureType19139
TRUE
ISOFeatureTypeInfo
TRUE
ISOFileName
TRUE
ISOFormat
TRUE
ISOFormatConsistency
TRUE
ISOFreeText
TRUE
ISOFullInspection
TRUE
ISOGeographicBoundingBox
TRUE
ISOGeographicDescription
TRUE
ISOGeographicExtent
TRUE
ISOGeometricObjects
TRUE
ISOGeometricObjectType
TRUE
ISOGeorectified
TRUE
ISOGeoreferenceable
TRUE
ISOGriddedDataPositionalAccuracy
TRUE
ISOGridSpatialRepresentation
TRUE
ISOHomogeneity
TRUE
ISOIdentification
TRUE
ISOIdentification19115_3
TRUE
ISOIdentification19139
TRUE
ISOImageDescription
TRUE
ISOImageryAbstractGeolocationInformation
TRUE
ISOImageryAcquisitionInformation
TRUE
ISOImageryAlgorithm
TRUE
ISOImageryBand
TRUE
ISOImageryBandDefinition
TRUE
ISOImageryContext
TRUE
ISOImageryCoverageDescription
TRUE
ISOImageryCoverageResult
TRUE
ISOImageryEnvironmentalRecord
TRUE
ISOImageryEvent
TRUE
ISOImageryGCP
TRUE
ISOImageryGCPCollection
TRUE
ISOImageryGeometryType
TRUE
ISOImageryGeorectified
TRUE
ISOImageryGeoreferenceable
TRUE
ISOImageryImageDescription
TRUE
ISOImageryInstrument
TRUE
ISOImageryMetadata
TRUE
ISOImageryNominalResolution
TRUE
ISOImageryObjective
TRUE
ISOImageryObjectiveType
TRUE
ISOImageryOperation
TRUE
ISOImageryOperationType
TRUE
ISOImageryPlan
TRUE
ISOImageryPlatform
TRUE
ISOImageryPlatformPass
TRUE
ISOImageryPolarisationOrientation
TRUE
ISOImageryPriority
TRUE
ISOImageryProcessing
TRUE
ISOImageryProcessStep
TRUE
ISOImageryProcessStepReport
TRUE
ISOImageryRangeElementDescription
TRUE
ISOImageryRequestedDate
TRUE
ISOImageryRequirement
TRUE
ISOImageryRevision
TRUE
ISOImagerySensor
TRUE
ISOImagerySensorType
TRUE
ISOImagerySequence
TRUE
ISOImagerySource
TRUE
ISOImageryTransferFunctionType
TRUE
ISOImageryTrigger
TRUE
ISOImageryUsability
TRUE
ISOImagingCondition
TRUE
ISOIndirectEvaluation
TRUE
ISOIndividual
TRUE
ISOInheritanceRelation
TRUE
ISOInitiative
TRUE
ISOInitiativeType
TRUE
ISOInstrumentationEvent
TRUE
ISOInstrumentationEventList
TRUE
ISOInstrumentationEventType
TRUE
ISOKeywordClass
TRUE
ISOKeywords
TRUE
ISOKeywordType
TRUE
ISOLanguage
TRUE
ISOLegalConstraints
TRUE
ISOLength
TRUE
ISOLineage
TRUE
ISOListedValue
TRUE
ISOLocale
TRUE
ISOLocaleContainer
TRUE
ISOLocalisedCharacterString
TRUE
ISOLocalName
TRUE
ISOMaintenanceFrequency
TRUE
ISOMaintenanceInformation
TRUE
ISOMDFeatureCatalogue
TRUE
ISOMeasure
TRUE
ISOMeasureReference
TRUE
ISOMedium
TRUE
ISOMediumFormat
TRUE
ISOMediumName
TRUE
ISOMemberName
TRUE
ISOMetadata
TRUE
ISOMetadataExtensionInformation
TRUE
ISOMetadataNamespace
TRUE
ISOMetadataScope
TRUE
ISOMetaIdentifier
TRUE
ISOMimeFileType
TRUE
ISOMLCodeDefinition
TRUE
ISOMLCodeListDictionary
TRUE
ISOMultiplicity
TRUE
ISOMultiplicityRange
TRUE
ISONonQuantitativeAttributeAccuracy
TRUE
ISONonQuantitativeAttributeCorrectness
TRUE
ISOObligation
TRUE
ISOOnLineFunction
TRUE
ISOOnlineResource
TRUE
ISOOperationChainMetadata
TRUE
ISOOperationMetadata
TRUE
ISOOrganisation
TRUE
ISOOtherAggregate
TRUE
ISOParameterDirection
TRUE
ISOPeriodDuration
TRUE
ISOPixelOrientation
TRUE
ISOPlatform
TRUE
ISOPortrayalCatalogueReference
TRUE
ISOPresentationForm
TRUE
ISOProcessParameter
TRUE
ISOProcessStep
TRUE
ISOProductionSeries
TRUE
ISOProgress
TRUE
ISOPropertyType
TRUE
ISOQualityResultFile
TRUE
ISOQuantitativeAttributeAccuracy
TRUE
ISOQuantitativeResult
TRUE
ISORangeDimension
TRUE
ISORecord
TRUE
ISORecordType
TRUE
ISOReferenceIdentifier
TRUE
ISOReferenceSystem
TRUE
ISOReferenceSystemType
TRUE
ISORelativeInternalPositionalAccuracy
TRUE
ISOReleasability
TRUE
ISORepresentativeFraction
TRUE
ISORepresentativity
TRUE
ISOResolution
TRUE
ISOResponsibility
TRUE
ISOResponsibleParty
TRUE
ISORestriction
TRUE
ISORole
TRUE
ISORoleType
TRUE
ISOSampleBasedInspection
TRUE
ISOSampleDimension
TRUE
ISOScale
TRUE
ISOScope
TRUE
ISOScopeCode
TRUE
ISOScopeDescription
TRUE
ISOScopedName
TRUE
ISOSecurityConstraints
TRUE
ISOSensor
TRUE
ISOSeries
TRUE
ISOServiceIdentification
TRUE
ISOServiceIdentification19115_3
TRUE
ISOServiceIdentification19139
TRUE
ISOSource
TRUE
ISOSpatialRepresentation
TRUE
ISOSpatialRepresentationType
TRUE
ISOSpatialTemporalExtent
TRUE
ISOSRVParameter
TRUE
ISOSRVParameterDirection
TRUE
ISOSRVServiceIdentification
TRUE
ISOSRVServiceIdentification19115_3
TRUE
ISOSRVServiceIdentification19139
TRUE
ISOStandaloneQualityReportInformation
TRUE
ISOStandardOrderProcess
TRUE
ISOStatus
TRUE
ISOStereoMate
TRUE
ISOTelephone
TRUE
ISOTelephoneType
TRUE
ISOTemporalConsistency
TRUE
ISOTemporalExtent
TRUE
ISOTemporalValidity
TRUE
ISOThematicClassificationCorrectness
TRUE
ISOTopicCategory
TRUE
ISOTopologicalConsistency
TRUE
ISOTopologyLevel
TRUE
ISOTypeName
TRUE
ISOUnlimitedInteger
TRUE
ISOUomIdentifier
TRUE
ISOURI
TRUE
ISOURL
TRUE
ISOUsabilityElement
TRUE
ISOUsage
TRUE
ISOVectorSpatialRepresentation
TRUE
ISOVerticalExtent
TRUE
pivot_converter
TRUE
pivot_format
TRUE
readISO
TRUE
readISO19139
TRUE
registerISOCodelist
TRUE
registerISOMetadataNamespace
TRUE
registerISOMetadataSchema
TRUE
registerMappingFormat
TRUE
registerMappings
TRUE
setGeometaOption
TRUE
setIANAMimeTypes
TRUE
setISOCodelists
TRUE
setISOMetadataNamespaces
TRUE
setISOMetadataSchemas
TRUE
setMappingFormats
TRUE
setMetadataStandard
TRUE
SWEAbstractDataComponent
TRUE
SWEAbstractEncoding
TRUE
SWEAbstractObject
TRUE
SWEAbstractSimpleComponent
TRUE
SWEAbstractSWE
TRUE
SWEAbstractSWEIdentifiable
TRUE
SWECategory
TRUE
SWECategoryRange
TRUE
SWECount
TRUE
SWECountRange
TRUE
SWEDataRecord
TRUE
SWEElement
TRUE
SWENilValues
TRUE
SWEQuantity
TRUE
SWEQuantityRange
TRUE
SWEText
TRUE
SWETextEncoding
TRUE
SWETime
TRUE
SWETimeRange
TRUE
SWEXMLEncoding
TRUE Examples
There are 211 help pages with examples, from 462 (45.67 %).
NEWS
The package has NEWS file and it is current.
License
The package uses .
Installation environment
System Info
| Field | Value |
|---|---|
| Image | rhub/ref-image |
| OS | Ubuntu 24.04.2 LTS |
| Platform | x86_64-pc-linux-gnu |
| System | x86_64, linux-gnu |
| Execution Time | 2025-03-23 03:33:08 UTC |
System information. Table about the system used to check the package.
R Session Info
Information about the R environment and capabilities:
R version 4.4.3 (2025-02-28)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 24.04.2 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so; LAPACK version 3.12.0
locale:
[1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8
[4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8
[7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C
time zone: UTC
tzcode source: system (glibc)
attached base packages:
[1] tools stats graphics grDevices utils datasets methods
[8] base
loaded via a namespace (and not attached):
[1] riskreports_0.0.0.9003 compiler_4.4.3 fastmap_1.2.0
[4] cli_3.6.4 htmltools_0.5.8.1 yaml_2.3.10
[7] rmarkdown_2.29 knitr_1.50 jsonlite_1.9.1
[10] xfun_0.51 digest_0.6.37 rlang_1.1.5
[13] evaluate_1.0.3 Platform used:
OS.type file.sep dynlib.ext GUI endian pkgType path.sep
"unix" "/" ".so" "X11" "little" "source" ":"
r_arch
"" R’s capabilities:
jpeg png tiff tcltk X11 aqua
TRUE TRUE TRUE TRUE FALSE FALSE
http/ftp sockets libxml fifo cledit iconv
TRUE TRUE FALSE TRUE FALSE TRUE
NLS Rprof profmem cairo ICU long.double
TRUE TRUE TRUE TRUE TRUE TRUE
libcurl
TRUE External software:
zlib
"1.3"
bzlib
"1.0.8, 13-Jul-2019"
xz
"5.4.5"
libdeflate
"1.19"
PCRE
"10.42 2022-12-11"
ICU
"74.2"
TRE
"TRE 0.8.0 R_fixes (BSD)"
iconv
"glibc 2.39"
readline
"8.2"
BLAS
"/usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3" Graphics external software:
cairo cairoFT pango
"1.18.0" "" "1.52.1"
libpng jpeg libtiff
"1.6.43" "8.0" "LIBTIFF, Version 4.5.1" Numerical characteristics of the machine:
double.eps double.neg.eps double.xmin
2.220446e-16 1.110223e-16 2.225074e-308
double.xmax double.base double.digits
1.797693e+308 2.000000e+00 5.300000e+01
double.rounding double.guard double.ulp.digits
5.000000e+00 0.000000e+00 -5.200000e+01
double.neg.ulp.digits double.exponent double.min.exp
-5.300000e+01 1.100000e+01 -1.022000e+03
double.max.exp integer.max sizeof.long
1.024000e+03 2.147484e+09 8.000000e+00
sizeof.longlong sizeof.longdouble sizeof.pointer
8.000000e+00 1.600000e+01 8.000000e+00
sizeof.time_t longdouble.eps longdouble.neg.eps
8.000000e+00 1.084202e-19 5.421011e-20
longdouble.digits longdouble.rounding longdouble.guard
6.400000e+01 5.000000e+00 0.000000e+00
longdouble.ulp.digits longdouble.neg.ulp.digits longdouble.exponent
-6.300000e+01 -6.400000e+01 1.500000e+01
longdouble.min.exp longdouble.max.exp
-1.638200e+04 1.638400e+04 Random number generation process:
[1] "Mersenne-Twister" "Inversion" "Rejection" Information about the environment
Environmental and options variables affect how package checks and software in it might behave. Here is the environmental variables when running this report
_R_CHECK_SYSTEM_CLOCK_
FALSE
ACCEPT_EULA Y
ACTIONS_RUNNER_ACTION_ARCHIVE_CACHE
/opt/actionarchivecache
AGENT_TOOLSDIRECTORY /opt/hostedtoolcache
ANDROID_HOME /usr/local/lib/android/sdk
ANDROID_NDK /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_HOME /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_LATEST_HOME
/usr/local/lib/android/sdk/ndk/28.0.13004108
ANDROID_NDK_ROOT /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_SDK_ROOT /usr/local/lib/android/sdk
ANT_HOME /usr/share/ant
AZURE_EXTENSION_DIR /opt/az/azcliextensions
BOOTSTRAP_HASKELL_NONINTERACTIVE
1
BUNDLE_EXT linux-amd64.deb
CHROME_BIN /usr/bin/google-chrome
CHROMEWEBDRIVER /usr/local/share/chromedriver-linux64
CI true
CONDA /usr/share/miniconda
DEBIAN_FRONTEND noninteractive
DENO_DOM_PLUGIN /opt/quarto/bin/tools/x86_64/deno_dom/libplugin.so
DENO_NO_UPDATE_CHECK 1
DENO_TLS_CA_STORE system,mozilla
DEPLOYMENT_BASEPATH /opt/runner
DOTNET_MULTILEVEL_LOOKUP
0
DOTNET_NOLOGO 1
DOTNET_SKIP_FIRST_TIME_EXPERIENCE
1
EDGEWEBDRIVER /usr/local/share/edge_driver
EDITOR vi
GECKOWEBDRIVER /usr/local/share/gecko_driver
GHCUP_INSTALL_BASE_PREFIX
/usr/local
GITHUB_ACTION __run_2
GITHUB_ACTION_REF
GITHUB_ACTION_REPOSITORY
GITHUB_ACTIONS true
GITHUB_ACTOR llrs-roche
GITHUB_ACTOR_ID 185338939
GITHUB_API_URL https://api.github.com
GITHUB_BASE_REF
GITHUB_ENV /home/runner/work/_temp/_runner_file_commands/set_env_8d92b383-fa60-4724-ab24-84d85ac603eb
GITHUB_EVENT_NAME schedule
GITHUB_EVENT_PATH /home/runner/work/_temp/_github_workflow/event.json
GITHUB_GRAPHQL_URL https://api.github.com/graphql
GITHUB_HEAD_REF
GITHUB_JOB main
GITHUB_OUTPUT /home/runner/work/_temp/_runner_file_commands/set_output_8d92b383-fa60-4724-ab24-84d85ac603eb
GITHUB_PATH /home/runner/work/_temp/_runner_file_commands/add_path_8d92b383-fa60-4724-ab24-84d85ac603eb
GITHUB_REF refs/heads/main
GITHUB_REF_NAME main
GITHUB_REF_PROTECTED false
GITHUB_REF_TYPE branch
GITHUB_REPOSITORY pharmaR/pharmapkgs
GITHUB_REPOSITORY_ID 798326913
GITHUB_REPOSITORY_OWNER
pharmaR
GITHUB_REPOSITORY_OWNER_ID
42115094
GITHUB_RETENTION_DAYS 90
GITHUB_RUN_ATTEMPT 1
GITHUB_RUN_ID 14015082824
GITHUB_RUN_NUMBER 143
GITHUB_SERVER_URL https://github.com
GITHUB_SHA 64d0e91d120a4565890025724d2b8c4decfdb168
GITHUB_STATE /home/runner/work/_temp/_runner_file_commands/save_state_8d92b383-fa60-4724-ab24-84d85ac603eb
GITHUB_STEP_SUMMARY /home/runner/work/_temp/_runner_file_commands/step_summary_8d92b383-fa60-4724-ab24-84d85ac603eb
GITHUB_TRIGGERING_ACTOR
llrs-roche
GITHUB_WORKFLOW Update package repositories
GITHUB_WORKFLOW_REF pharmaR/pharmapkgs/.github/workflows/update-repos.yml@refs/heads/main
GITHUB_WORKFLOW_SHA 64d0e91d120a4565890025724d2b8c4decfdb168
GITHUB_WORKSPACE /home/runner/work/pharmapkgs/pharmapkgs
GOROOT_1_21_X64 /opt/hostedtoolcache/go/1.21.13/x64
GOROOT_1_22_X64 /opt/hostedtoolcache/go/1.22.12/x64
GOROOT_1_23_X64 /opt/hostedtoolcache/go/1.23.7/x64
GRADLE_HOME /usr/share/gradle-8.13
HOME /home/runner
HOMEBREW_CLEANUP_PERIODIC_FULL_DAYS
3650
HOMEBREW_NO_AUTO_UPDATE
1
ImageOS ubuntu24
ImageVersion 20250316.1.0
INVOCATION_ID fb4dd380b87a40c3b6a3e1923bdb511f
JAVA_HOME /usr/lib/jvm/temurin-17-jdk-amd64
JAVA_HOME_11_X64 /usr/lib/jvm/temurin-11-jdk-amd64
JAVA_HOME_17_X64 /usr/lib/jvm/temurin-17-jdk-amd64
JAVA_HOME_21_X64 /usr/lib/jvm/temurin-21-jdk-amd64
JAVA_HOME_8_X64 /usr/lib/jvm/temurin-8-jdk-amd64
JOURNAL_STREAM 8:7572
LANG C.UTF-8
LD_LIBRARY_PATH /opt/R/4.4.3/lib/R/lib:/usr/local/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/temurin-17-jdk-amd64/lib/server:/opt/R/4.4.3/lib/R/lib:/usr/local/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/temurin-17-jdk-amd64/lib/server
LN_S ln -s
LOGGER_LOG_LEVEL DEBUG
MAKE make
MEMORY_PRESSURE_WATCH /sys/fs/cgroup/system.slice/runner-provisioner.service/memory.pressure
MEMORY_PRESSURE_WRITE c29tZSAyMDAwMDAgMjAwMDAwMAA=
NOT_CRAN true
NVM_DIR /home/runner/.nvm
PAGER /usr/bin/pager
PATH /snap/bin:/home/runner/.local/bin:/opt/pipx_bin:/home/runner/.cargo/bin:/home/runner/.config/composer/vendor/bin:/usr/local/.ghcup/bin:/home/runner/.dotnet/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
PERFLOG_LOCATION_SETTING
RUNNER_PERFLOG
PHARMAPKGS_EXCLUDED_METRICS
assess_covr_coverage,assess_r_cmd_check
PHARMAPKGS_LIMIT 100
PHARMAPKGS_PLATFORM ubuntu-22.04
PHARMAPKGS_R_VERSION 4.4
PHARMAPKGS_REMOTE_REPO
https://cloud.r-project.org/
PIPX_BIN_DIR /opt/pipx_bin
PIPX_HOME /opt/pipx
PKGCACHE_HTTP_VERSION 2
PKGLOAD_PARENT_TEMPDIR
/tmp/Rtmp69KTGW
POWERSHELL_DISTRIBUTION_CHANNEL
GitHub-Actions-ubuntu24
PROCESSX_PS1c295676a1cd_1742700784
YES
PWD /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_BIN_PATH /opt/quarto/bin
QUARTO_DENO /opt/quarto/bin/tools/x86_64/deno
QUARTO_DOCUMENT_PATH /home/runner/work/pharmapkgs/pharmapkgs/inst/report
QUARTO_PROFILE
QUARTO_PROJECT_DIR /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_PROJECT_ROOT /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_ROOT /
QUARTO_SHARE_PATH /opt/quarto/share
R_ARCH
R_BROWSER xdg-open
R_BZIPCMD /usr/bin/bzip2
R_DOC_DIR /opt/R/4.4.3/lib/R/doc
R_GZIPCMD /usr/bin/gzip
R_HOME /opt/R/4.4.3/lib/R
R_INCLUDE_DIR /opt/R/4.4.3/lib/R/include
R_LIB_FOR_PAK /opt/R/4.4.3/lib/R/site-library
R_LIBS_SITE /opt/R/4.4.3/lib/R/site-library
R_LIBS_USER /home/runner/work/_temp/Library
R_PAPERSIZE letter
R_PAPERSIZE_USER letter
R_PDFVIEWER /usr/bin/xdg-open
R_PLATFORM x86_64-pc-linux-gnu
R_PRINTCMD /usr/bin/lpr
R_RD4PDF times,inconsolata,hyper
R_SESSION_TMPDIR /tmp/Rtmp0ezPrQ
R_SHARE_DIR /opt/R/4.4.3/lib/R/share
R_STRIP_SHARED_LIB strip --strip-unneeded
R_STRIP_STATIC_LIB strip --strip-debug
R_TEXI2DVICMD /usr/bin/texi2dvi
R_UNZIPCMD /usr/bin/unzip
R_ZIPCMD /usr/bin/zip
RUNNER_ARCH X64
RUNNER_ENVIRONMENT github-hosted
RUNNER_NAME GitHub-Actions-1000000635
RUNNER_OS Linux
RUNNER_PERFLOG /home/runner/perflog
RUNNER_TEMP /home/runner/work/_temp
RUNNER_TOOL_CACHE /opt/hostedtoolcache
RUNNER_TRACKING_ID github_764eba70-fbe7-487a-a22e-f91ed0a024cf
RUNNER_USER runner
RUNNER_WORKSPACE /home/runner/work/pharmapkgs
SED /usr/bin/sed
SELENIUM_JAR_PATH /usr/share/java/selenium-server.jar
SGX_AESM_ADDR 1
SHLVL 1
STATS_D true
STATS_D_D true
STATS_D_TC true
STATS_EXT true
STATS_EXTP https://provjobdprod.z13.web.core.windows.net/settings/provjobdsettings-latest/provjobd.data
STATS_PIP false
STATS_RDCL true
STATS_TRP true
STATS_UE true
STATS_V3PS true
STATS_VMD true
STATS_VMFE true
SWIFT_PATH /usr/share/swift/usr/bin
SYSTEMD_EXEC_PID 836
TAR /usr/bin/tar
TZ UTC
USER runner
VCPKG_INSTALLATION_ROOT
/usr/local/share/vcpkg
XDG_CONFIG_HOME /home/runner/.config
XDG_RUNTIME_DIR /run/user/1001These are the options set to generate the report:
$add.smooth
[1] TRUE
$bitmapType
[1] "cairo"
$browser
[1] "xdg-open"
$browserNLdisabled
[1] FALSE
$callr.condition_handler_cli_message
function (msg)
{
custom_handler <- getOption("cli.default_handler")
if (is.function(custom_handler)) {
custom_handler(msg)
}
else {
cli_server_default(msg)
}
}
<bytecode: 0x55bdcfc6e330>
<environment: namespace:cli>
$catch.script.errors
[1] FALSE
$CBoundsCheck
[1] FALSE
$check.bounds
[1] FALSE
$citation.bibtex.max
[1] 1
$continue
[1] "+ "
$contrasts
unordered ordered
"contr.treatment" "contr.poly"
$covr.record_tests
[1] TRUE
$defaultPackages
[1] "datasets" "utils" "grDevices" "graphics" "stats" "methods"
$demo.ask
[1] "default"
$deparse.cutoff
[1] 60
$device
function (width = 7, height = 7, ...)
{
grDevices::pdf(NULL, width, height, ...)
}
<bytecode: 0x55bdcf1590c0>
<environment: namespace:knitr>
$device.ask.default
[1] FALSE
$digits
[1] 7
$dvipscmd
[1] "dvips"
$echo
[1] FALSE
$editor
[1] "vi"
$encoding
[1] "native.enc"
$example.ask
[1] "default"
$expressions
[1] 5000
$help.search.types
[1] "vignette" "demo" "help"
$help.try.all.packages
[1] FALSE
$htmltools.preserve.raw
[1] TRUE
$HTTPUserAgent
[1] "R/4.4.3 R (4.4.3 x86_64-pc-linux-gnu x86_64 linux-gnu) on GitHub Actions"
$internet.info
[1] 2
$keep.parse.data
[1] TRUE
$keep.parse.data.pkgs
[1] FALSE
$keep.source
[1] FALSE
$keep.source.pkgs
[1] FALSE
$knitr.in.progress
[1] TRUE
$locatorBell
[1] TRUE
$mailer
[1] "mailto"
$matprod
[1] "default"
$max.contour.segments
[1] 25000
$max.print
[1] 99999
$menu.graphics
[1] TRUE
$na.action
[1] "na.omit"
$Ncpus
[1] 1
$nwarnings
[1] 50
$OutDec
[1] "."
$pager
[1] "/opt/R/4.4.3/lib/R/bin/pager"
$papersize
[1] "letter"
$PCRE_limit_recursion
[1] NA
$PCRE_study
[1] FALSE
$PCRE_use_JIT
[1] TRUE
$pdfviewer
[1] "/usr/bin/xdg-open"
$pkgType
[1] "source"
$printcmd
[1] "/usr/bin/lpr"
$prompt
[1] "> "
$repos
CRAN
"https://cran.rstudio.com"
$rl_word_breaks
[1] " \t\n\"\\'`><=%;,|&{()}"
$rlang_trace_top_env
<environment: R_GlobalEnv>
$scipen
[1] 0
$show.coef.Pvalues
[1] TRUE
$show.error.messages
[1] TRUE
$show.signif.stars
[1] TRUE
$showErrorCalls
[1] TRUE
$showNCalls
[1] 50
$showWarnCalls
[1] FALSE
$str
$str$strict.width
[1] "no"
$str$digits.d
[1] 3
$str$vec.len
[1] 4
$str$list.len
[1] 99
$str$deparse.lines
NULL
$str$drop.deparse.attr
[1] TRUE
$str$formatNum
function (x, ...)
format(x, trim = TRUE, drop0trailing = TRUE, ...)
<environment: 0x55bdcf149688>
$str.dendrogram.last
[1] "`"
$texi2dvi
[1] "/usr/bin/texi2dvi"
$tikzMetricsDictionary
[1] "validation_report_geometa_v0.9.1-tikzDictionary"
$timeout
[1] 60
$try.outFile
A connection with
description ""
class "file"
mode "w+b"
text "binary"
opened "opened"
can read "yes"
can write "yes"
$ts.eps
[1] 1e-05
$ts.S.compat
[1] FALSE
$unzip
[1] "/usr/bin/unzip"
$useFancyQuotes
[1] FALSE
$verbose
[1] FALSE
$warn
[1] 0
$warning.length
[1] 1000
$warnPartialMatchArgs
[1] FALSE
$warnPartialMatchAttr
[1] FALSE
$warnPartialMatchDollar
[1] FALSE
$width
[1] 80