Validation Report - gamlss@5.4.22
Context
This report is fully automated and builds on rhub/ref-image image. Documents the installation of this package on an open source R environment, focusing on:
- Installation environment description
- Testing coverage
It is limited to assess whether unit tests and documentation are present and can execute without error. An assessment would be required that the tests and documentation are meaningful.
Package gamlss
Metric based risk assessment
The following metrics are derived from the riskmetric R package.
| has_news | 1 |
| news_current | FALSE |
| exported_namespace | 162 |
| has_vignettes | 0 |
| export_help | 162 |
| has_website | TRUE |
| has_maintainer | Mikis Stasinopoulos d.stasinopoulos@gre.ac.uk |
| bugs_status | 0.3888889 |
| assess_size_codebase | 17290 |
| has_bug_reports_url | 1 |
| downloads_1yr | 264181 |
| reverse_dependencies | 60 |
| has_examples | 1 |
| dependencies | 12 |
| license | GPL-2 | GPL-3 |
Package general assessment: Coverage, check results, size, download the last year, reverse dependencies and number of dependencies.
Dependencies
Overall the package has these dependencies:
| package | type | |
|---|---|---|
| 1 | graphics | Depends |
| 2 | stats | Depends |
| 3 | splines | Depends |
| 4 | utils | Depends |
| 5 | grDevices | Depends |
| 6 | gamlss.data (>= 5.0-0) | Depends |
| 7 | gamlss.dist (>= 4.3.1) | Depends |
| 8 | nlme | Depends |
| 9 | parallel | Depends |
| 10 | MASS | Imports |
| 11 | survival | Imports |
| 12 | methods | Imports |
Package dependencies
Reverse dependencies
Overall the package has 60 reverse dependencies:
acid, AGD, bamlss, binequality, bodycompref, borealis, broom.mixed, BSagri, chicane, childsds, circhelp, ComBatFamQC, depmixS4, DEsingle, DiscreteDists, distreg.vis, ensemblepp, fMRIscrub, gamboostLSS, gamlss.add, gamlss.cens, gamlss.countKinf, gamlss.foreach, gamlss.ggplots, gamlss.inf, gamlss.lasso, gamlss.mx, gamlss.spatial, gamlss.tr, gamlssbssn, gamlssx, ggeffects, hnp, hytest, ImputeRobust, insight, marginaleffects, metamicrobiomeR, mixpoissonreg, MNM, modelsummary, OutSeekR, parameters, pbox, PerformanceAnalytics, QFASA, qra, RelDists, scDesign3, scRecover, SEI, semsfa, shinyCLT, SPIChanges, sregsurvey, surveillance, SVEMnet, tram, ugomquantreg, vasicekreg
Namespace
Overall the package has 162 exported objects. 162 are documented:
.binom .binom .counts .counts
TRUE TRUE TRUE TRUE
.gamlss.bi.list .gamlss.bi.list .gamlss.multin.list .gamlss.multin.list
TRUE TRUE TRUE TRUE
.gamlss.sm.list .gamlss.sm.list .hat.WX .hat.WX
TRUE TRUE TRUE TRUE
.real0to1 .real0to1 .realAll .realAll
TRUE TRUE TRUE TRUE
.realline .realline .realplus .realplus
TRUE TRUE TRUE TRUE
acfResid add1All add1TGD bfp
TRUE TRUE TRUE TRUE
bp calibration centiles centiles.com
TRUE TRUE TRUE TRUE
centiles.fan centiles.pred centiles.split chooseDist
TRUE TRUE TRUE TRUE
chooseDistPred coefAll cs cs.control
TRUE TRUE TRUE TRUE
CV cy cy.control devianceIncr
TRUE TRUE TRUE TRUE
drop1All drop1TGD dtop ECDF
TRUE TRUE TRUE TRUE
edf edfAll find.hyper findPower
TRUE TRUE TRUE TRUE
fitDist fitDistPred fittedPlot fp
TRUE TRUE TRUE TRUE
fv GAIC GAIC.scaled GAIC.table
TRUE TRUE TRUE TRUE
gamlss gamlss.control gamlss.cs gamlss.cy
TRUE TRUE TRUE TRUE
gamlss.fp gamlss.lo gamlss.pb gamlss.pbc
TRUE TRUE TRUE TRUE
gamlss.pbm gamlss.pbo gamlss.pbp gamlss.pbz
TRUE TRUE TRUE TRUE
gamlss.pcat gamlss.pp gamlss.ps gamlss.pvc
TRUE TRUE TRUE TRUE
gamlss.random gamlss.re gamlss.ri gamlss.scope
TRUE TRUE TRUE TRUE
gamlssCV gamlssML gamlssMLpred gamlssNews
TRUE TRUE TRUE TRUE
gamlssVGD gen.likelihood get.K get.rqres
TRUE TRUE TRUE TRUE
getOrder getPEF getQuantile getSmo
TRUE TRUE TRUE TRUE
getTGD getZmatrix glim.control histDist
TRUE TRUE TRUE TRUE
histSmo histSmoC histSmoO histSmoP
TRUE TRUE TRUE TRUE
IC is.gamlss lms lo
TRUE TRUE TRUE TRUE
loglogplot loglogSurv loglogSurv1 loglogSurv2
TRUE TRUE TRUE TRUE
loglogSurv3 logSurv logSurv0 lp
TRUE TRUE TRUE TRUE
lpred LR.test numeric.deriv par.plot
TRUE TRUE TRUE TRUE
pb pb.control pbc pbc.control
TRUE TRUE TRUE TRUE
pbm pbm.control pbo pbo.control
TRUE TRUE TRUE TRUE
pbp pbp.control pbz pbz.control
TRUE TRUE TRUE TRUE
pcat pdf.plot plot2way plotDF
TRUE TRUE TRUE TRUE
plotLambda pp predictAll prof.dev
TRUE TRUE TRUE TRUE
prof.term ps pvc pvc.control
TRUE TRUE TRUE TRUE
Q.stats quantSheets quantSheets.control random
TRUE TRUE TRUE TRUE
re refit ri rqres.plot
TRUE TRUE TRUE TRUE
Rsq rvcov scs stepGAIC
TRUE TRUE TRUE TRUE
stepGAIC.CH stepGAIC.VR stepGAICAll.A stepGAICAll.B
TRUE TRUE TRUE TRUE
stepTGD stepTGDAll.A term.plot TGD
TRUE TRUE TRUE TRUE
VC.test VGD vis.lo wp
TRUE TRUE TRUE TRUE
z.scores z.scoresQS
TRUE TRUE Examples
There are 74 help pages with examples, from 74 (100.00 %).
NEWS
The package has NEWS file and it is current.
License
The package uses .
Installation environment
System Info
| Field | Value |
|---|---|
| Image | rhub/ref-image |
| OS | Ubuntu 24.04.2 LTS |
| Platform | x86_64-pc-linux-gnu |
| System | x86_64, linux-gnu |
| Execution Time | 2025-03-19 03:30:21 UTC |
System information. Table about the system used to check the package.
R Session Info
Information about the R environment and capabilities:
R version 4.4.3 (2025-02-28)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 24.04.2 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so; LAPACK version 3.12.0
locale:
[1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8
[4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8
[7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C
time zone: UTC
tzcode source: system (glibc)
attached base packages:
[1] tools stats graphics grDevices utils datasets methods
[8] base
loaded via a namespace (and not attached):
[1] riskreports_0.0.0.9003 compiler_4.4.3 fastmap_1.2.0
[4] cli_3.6.4 htmltools_0.5.8.1 yaml_2.3.10
[7] rmarkdown_2.29 knitr_1.50 jsonlite_1.9.1
[10] xfun_0.51 digest_0.6.37 rlang_1.1.5
[13] evaluate_1.0.3 Platform used:
OS.type file.sep dynlib.ext GUI endian pkgType path.sep
"unix" "/" ".so" "X11" "little" "source" ":"
r_arch
"" R’s capabilities:
jpeg png tiff tcltk X11 aqua
TRUE TRUE TRUE TRUE FALSE FALSE
http/ftp sockets libxml fifo cledit iconv
TRUE TRUE FALSE TRUE FALSE TRUE
NLS Rprof profmem cairo ICU long.double
TRUE TRUE TRUE TRUE TRUE TRUE
libcurl
TRUE External software:
zlib
"1.3"
bzlib
"1.0.8, 13-Jul-2019"
xz
"5.4.5"
libdeflate
"1.19"
PCRE
"10.42 2022-12-11"
ICU
"74.2"
TRE
"TRE 0.8.0 R_fixes (BSD)"
iconv
"glibc 2.39"
readline
"8.2"
BLAS
"/usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3" Graphics external software:
cairo cairoFT pango
"1.18.0" "" "1.52.1"
libpng jpeg libtiff
"1.6.43" "8.0" "LIBTIFF, Version 4.5.1" Numerical characteristics of the machine:
double.eps double.neg.eps double.xmin
2.220446e-16 1.110223e-16 2.225074e-308
double.xmax double.base double.digits
1.797693e+308 2.000000e+00 5.300000e+01
double.rounding double.guard double.ulp.digits
5.000000e+00 0.000000e+00 -5.200000e+01
double.neg.ulp.digits double.exponent double.min.exp
-5.300000e+01 1.100000e+01 -1.022000e+03
double.max.exp integer.max sizeof.long
1.024000e+03 2.147484e+09 8.000000e+00
sizeof.longlong sizeof.longdouble sizeof.pointer
8.000000e+00 1.600000e+01 8.000000e+00
sizeof.time_t longdouble.eps longdouble.neg.eps
8.000000e+00 1.084202e-19 5.421011e-20
longdouble.digits longdouble.rounding longdouble.guard
6.400000e+01 5.000000e+00 0.000000e+00
longdouble.ulp.digits longdouble.neg.ulp.digits longdouble.exponent
-6.300000e+01 -6.400000e+01 1.500000e+01
longdouble.min.exp longdouble.max.exp
-1.638200e+04 1.638400e+04 Random number generation process:
[1] "Mersenne-Twister" "Inversion" "Rejection" Information about the environment
Environmental and options variables affect how package checks and software in it might behave. Here is the environmental variables when running this report
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FALSE
ACCEPT_EULA Y
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GITHUB_TRIGGERING_ACTOR
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PERFLOG_LOCATION_SETTING
RUNNER_PERFLOG
PHARMAPKGS_EXCLUDED_METRICS
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PHARMAPKGS_REMOTE_REPO
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PKGCACHE_HTTP_VERSION 2
PKGLOAD_PARENT_TEMPDIR
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POWERSHELL_DISTRIBUTION_CHANNEL
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YES
PWD /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_BIN_PATH /opt/quarto/bin
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QUARTO_PROFILE
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R_PLATFORM x86_64-pc-linux-gnu
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SED /usr/bin/sed
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SGX_AESM_ADDR 1
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TZ UTC
USER runner
VCPKG_INSTALLATION_ROOT
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XDG_CONFIG_HOME /home/runner/.config
XDG_RUNTIME_DIR /run/user/1001These are the options set to generate the report:
$add.smooth
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$bitmapType
[1] "cairo"
$browser
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$callr.condition_handler_cli_message
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<bytecode: 0x55dc9e959330>
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<bytecode: 0x55dc9df2fd88>
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$rlang_trace_top_env
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$str$formatNum
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A connection with
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$width
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