Validation Report - gamlss.ggplots@2.1.12
Context
This report is fully automated and builds on rhub/ref-image image. Documents the installation of this package on an open source R environment, focusing on:
- Installation environment description
- Testing coverage
It is limited to assess whether unit tests and documentation are present and can execute without error. An assessment would be required that the tests and documentation are meaningful.
Package gamlss.ggplots
Metric based risk assessment
The following metrics are derived from the riskmetric R package.
| has_news | 1 |
| news_current | TRUE |
| exported_namespace | 74 |
| has_vignettes | 0 |
| export_help | 74 |
| has_website | TRUE |
| has_maintainer | Mikis Stasinopoulos d.stasinopoulos@gre.ac.uk |
| bugs_status | 0.5 |
| assess_size_codebase | 8328 |
| has_bug_reports_url | 1 |
| downloads_1yr | 3643 |
| reverse_dependencies | 0 |
| has_examples | 1 |
| dependencies | 11 |
| license | GPL-2 | GPL-3 |
Package general assessment: Coverage, check results, size, download the last year, reverse dependencies and number of dependencies.
Dependencies
Overall the package has these dependencies:
| package | type | |
|---|---|---|
| 1 | gamlss.dist | Depends |
| 2 | gamlss (>= 4.3.3) | Depends |
| 3 | gamlss.foreach | Depends |
| 4 | methods | Imports |
| 5 | ggridges | Imports |
| 6 | ellipse | Imports |
| 7 | gamlss.inf | Imports |
| 8 | foreach | Imports |
| 9 | mgcv | Imports |
| 10 | ggplot2 | Imports |
| 11 | yaImpute | Imports |
Package dependencies
Reverse dependencies
Overall the package has 0 reverse dependencies:
Namespace
Overall the package has 74 exported objects. 74 are documented:
ACE add_resid_qqplot boot_coef
TRUE TRUE TRUE
boot_coef_one centile_bucket centile_bucket_wrap
TRUE TRUE TRUE
centile_colour_both centile_colour_half centile_gray_both
TRUE TRUE TRUE
family_cdf family_pdf fit_PB
TRUE TRUE TRUE
fitted_cdf fitted_cdf_data fitted_centiles
TRUE TRUE TRUE
fitted_centiles_legend fitted_devianceIncr fitted_leverage
TRUE TRUE TRUE
fitted_pdf fitted_pdf_data fitted_terms
TRUE TRUE TRUE
histSmo_plot mcor model_centiles
TRUE TRUE TRUE
model_density model_devianceIncr_diff model_GAIC
TRUE TRUE TRUE
model_GAIC_lollipop model_mom_bucket model_pca
TRUE TRUE TRUE
model_qqplot model_wp model_wp_wrap
TRUE TRUE TRUE
moment_bucket moment_bucket_wrap moment_colour_both
TRUE TRUE TRUE
moment_colour_half moment_gray_both moment_gray_half
TRUE TRUE TRUE
pcr_coef_path pcr_path pe_1_param
TRUE TRUE TRUE
pe_2_param pe_param pe_param_grid
TRUE TRUE TRUE
pe_pdf pe_pdf_grid predict_cdf
TRUE TRUE TRUE
predict_pdf prof_term quantile_gamlss
TRUE TRUE TRUE
resid_density resid_dtop resid_ecdf
TRUE TRUE TRUE
resid_index resid_median resid_mu
TRUE TRUE TRUE
resid_param resid_plots resid_qqplot
TRUE TRUE TRUE
resid_quantile resid_symmetry resid_wp
TRUE TRUE TRUE
resid_wp_wrap resid_xvar resp_mu
TRUE TRUE TRUE
resp_param resp_quantile y_acf
TRUE TRUE TRUE
y_dots y_ecdf y_hist
TRUE TRUE TRUE
y_pacf y_symmetry
TRUE TRUE Examples
There are 27 help pages with examples, from 27 (100.00 %).
NEWS
The package has NEWS file and it is current.
License
The package uses .
Installation environment
System Info
| Field | Value |
|---|---|
| Image | rhub/ref-image |
| OS | Ubuntu 24.04.2 LTS |
| Platform | x86_64-pc-linux-gnu |
| System | x86_64, linux-gnu |
| Execution Time | 2025-03-19 03:31:01 UTC |
System information. Table about the system used to check the package.
R Session Info
Information about the R environment and capabilities:
R version 4.4.3 (2025-02-28)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 24.04.2 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so; LAPACK version 3.12.0
locale:
[1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8
[4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8
[7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C
time zone: UTC
tzcode source: system (glibc)
attached base packages:
[1] tools stats graphics grDevices utils datasets methods
[8] base
loaded via a namespace (and not attached):
[1] riskreports_0.0.0.9003 compiler_4.4.3 fastmap_1.2.0
[4] cli_3.6.4 htmltools_0.5.8.1 yaml_2.3.10
[7] rmarkdown_2.29 knitr_1.50 jsonlite_1.9.1
[10] xfun_0.51 digest_0.6.37 rlang_1.1.5
[13] evaluate_1.0.3 Platform used:
OS.type file.sep dynlib.ext GUI endian pkgType path.sep
"unix" "/" ".so" "X11" "little" "source" ":"
r_arch
"" R’s capabilities:
jpeg png tiff tcltk X11 aqua
TRUE TRUE TRUE TRUE FALSE FALSE
http/ftp sockets libxml fifo cledit iconv
TRUE TRUE FALSE TRUE FALSE TRUE
NLS Rprof profmem cairo ICU long.double
TRUE TRUE TRUE TRUE TRUE TRUE
libcurl
TRUE External software:
zlib
"1.3"
bzlib
"1.0.8, 13-Jul-2019"
xz
"5.4.5"
libdeflate
"1.19"
PCRE
"10.42 2022-12-11"
ICU
"74.2"
TRE
"TRE 0.8.0 R_fixes (BSD)"
iconv
"glibc 2.39"
readline
"8.2"
BLAS
"/usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3" Graphics external software:
cairo cairoFT pango
"1.18.0" "" "1.52.1"
libpng jpeg libtiff
"1.6.43" "8.0" "LIBTIFF, Version 4.5.1" Numerical characteristics of the machine:
double.eps double.neg.eps double.xmin
2.220446e-16 1.110223e-16 2.225074e-308
double.xmax double.base double.digits
1.797693e+308 2.000000e+00 5.300000e+01
double.rounding double.guard double.ulp.digits
5.000000e+00 0.000000e+00 -5.200000e+01
double.neg.ulp.digits double.exponent double.min.exp
-5.300000e+01 1.100000e+01 -1.022000e+03
double.max.exp integer.max sizeof.long
1.024000e+03 2.147484e+09 8.000000e+00
sizeof.longlong sizeof.longdouble sizeof.pointer
8.000000e+00 1.600000e+01 8.000000e+00
sizeof.time_t longdouble.eps longdouble.neg.eps
8.000000e+00 1.084202e-19 5.421011e-20
longdouble.digits longdouble.rounding longdouble.guard
6.400000e+01 5.000000e+00 0.000000e+00
longdouble.ulp.digits longdouble.neg.ulp.digits longdouble.exponent
-6.300000e+01 -6.400000e+01 1.500000e+01
longdouble.min.exp longdouble.max.exp
-1.638200e+04 1.638400e+04 Random number generation process:
[1] "Mersenne-Twister" "Inversion" "Rejection" Information about the environment
Environmental and options variables affect how package checks and software in it might behave. Here is the environmental variables when running this report
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FALSE
ACCEPT_EULA Y
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PERFLOG_LOCATION_SETTING
RUNNER_PERFLOG
PHARMAPKGS_EXCLUDED_METRICS
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PKGCACHE_HTTP_VERSION 2
PKGLOAD_PARENT_TEMPDIR
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TZ UTC
USER runner
VCPKG_INSTALLATION_ROOT
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XDG_CONFIG_HOME /home/runner/.config
XDG_RUNTIME_DIR /run/user/1001These are the options set to generate the report:
$add.smooth
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$bitmapType
[1] "cairo"
$browser
[1] "xdg-open"
$browserNLdisabled
[1] FALSE
$callr.condition_handler_cli_message
function (msg)
{
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else {
cli_server_default(msg)
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}
<bytecode: 0x5654ff440330>
<environment: namespace:cli>
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{
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<bytecode: 0x5654fea17098>
<environment: namespace:knitr>
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$rl_word_breaks
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$rlang_trace_top_env
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$scipen
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$str$formatNum
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<environment: 0x5654fe91b688>
$str.dendrogram.last
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$try.outFile
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