Validation Report - gamlss.dist@6.1.1
Context
This report is fully automated and builds on rhub/ref-image image. Documents the installation of this package on an open source R environment, focusing on:
- Installation environment description
- Testing coverage
It is limited to assess whether unit tests and documentation are present and can execute without error. An assessment would be required that the tests and documentation are meaningful.
Package gamlss.dist
Metric based risk assessment
The following metrics are derived from the riskmetric R package.
| has_news | 1 |
| news_current | FALSE |
| exported_namespace | 648 |
| has_vignettes | 2 |
| export_help | 648 |
| has_website | TRUE |
| has_maintainer | Mikis Stasinopoulos d.stasinopoulos@gre.ac.uk |
| bugs_status | 0.4444444 |
| assess_size_codebase | 21704 |
| has_bug_reports_url | 1 |
| downloads_1yr | 143708 |
| reverse_dependencies | 61 |
| has_examples | 1 |
| dependencies | 5 |
| license | GPL-2 | GPL-3 |
Package general assessment: Coverage, check results, size, download the last year, reverse dependencies and number of dependencies.
Dependencies
Overall the package has these dependencies:
| package | type | |
|---|---|---|
| 1 | MASS | Imports |
| 2 | graphics | Imports |
| 3 | stats | Imports |
| 4 | methods | Imports |
| 5 | grDevices | Imports |
Package dependencies
Reverse dependencies
Overall the package has 61 reverse dependencies:
acid, AGD, asymmetry.measures, bamlss, binequality, borealis, childsds, ComBatFamQC, coveffectsplot, depmixS4, DiscreteDists, distreg.vis, EstimationTools, ExGaussEstim, fitdistrplus, gamboostLSS, gamlss, gamlss.add, gamlss.cens, gamlss.countKinf, gamlss.demo, gamlss.foreach, gamlss.ggplots, gamlss.inf, gamlss.mx, gamlss.spatial, gamlss.tr, gamlssbssn, gamlssx, GenHMM1d, GJRM, hnp, hytest, ImputeRobust, list, marginaleffects, mazeinda, mixpoissonreg, orders, OutSeekR, pbox, PerformanceAnalytics, PLreg, powdist, PReMiuM, profoc, QFASA, RelDists, rpql, scanstatistics, scDesign3, scModels, SEI, SimSST, SPIChanges, sregsurvey, SVEMnet, tramME, ugomquantreg, vasicekreg, ZINAR1
Namespace
Overall the package has 648 exported objects. 640 are documented:
as.family as.gamlss.family BB
TRUE TRUE TRUE
BCCG BCCGo BCCGuntr
TRUE TRUE TRUE
BCPE BCPEo BCPEuntr
TRUE TRUE TRUE
BCT BCTo BCTuntr
TRUE TRUE TRUE
BE BEINF BEINF0
TRUE TRUE TRUE
BEINF1 BEo BEOI
TRUE TRUE TRUE
BEZI BI binom_1_31
TRUE TRUE TRUE
binom_2_33 binom_3_33 BNB
TRUE TRUE TRUE
centileKurt centileSK centileSkew
TRUE TRUE TRUE
checkCentileSK checklink checkMomentSK
TRUE TRUE TRUE
contR_2_12 contR_3_11 contR_4_13
TRUE TRUE TRUE
contR01_2_13 contR01_4_33 contRplus_2_11
TRUE TRUE TRUE
contRplus_3_13 contRplus_4_33 count_1_22
TRUE TRUE TRUE
count_1_31 count_2_32 count_2_32R
TRUE TRUE TRUE
count_2_33 count_3_32 count_3_33
TRUE TRUE TRUE
dBB dBCCG dBCCGo
FALSE TRUE TRUE
dBCPE dBCPEo dBCT
TRUE TRUE TRUE
dBCTo dBE dBEINF
TRUE TRUE TRUE
dBEINF0 dBEINF1 dBEo
TRUE TRUE TRUE
dBEOI dBEZI dBI
TRUE TRUE TRUE
DBI dBNB DBURR12
TRUE TRUE TRUE
dDBI dDBURR12 dDEL
TRUE TRUE TRUE
dDPO dEGB2 DEL
TRUE TRUE TRUE
dexGAUS dEXP dGA
TRUE TRUE TRUE
dGAF dGB1 dGB2
TRUE TRUE TRUE
dGEOM dGEOMo dGG
TRUE TRUE TRUE
dGIG dGP dGPO
TRUE TRUE TRUE
dGT dGU dIG
TRUE FALSE TRUE
dIGAMMA dJSU dJSUo
TRUE TRUE TRUE
dLG dLNO dLO
TRUE TRUE TRUE
dLOGITNO dLOGNO dLOGNO2
TRUE TRUE TRUE
dLQNO dMN3 dMN4
TRUE TRUE TRUE
dMN5 dNBF dNBI
TRUE TRUE TRUE
dNBII dNET dNO
TRUE TRUE TRUE
dNO2 dNOF dPARETO
TRUE TRUE TRUE
dPARETO1 dPARETO1o dPARETO2
TRUE TRUE TRUE
dPARETO2o dPE dPE2
TRUE TRUE TRUE
dPIG dPIG2 dPO
TRUE TRUE TRUE
DPO dRG dRGE
TRUE TRUE TRUE
dSEP dSEP1 dSEP2
TRUE TRUE TRUE
dSEP3 dSEP4 dSHASH
TRUE TRUE TRUE
dSHASHo dSHASHo2 dSI
TRUE TRUE TRUE
dSICHEL dSIMPLEX dSN1
TRUE TRUE TRUE
dSN2 dSST dST1
TRUE TRUE TRUE
dST2 dST3 dST3C
TRUE TRUE TRUE
dST4 dST5 dTF
TRUE TRUE TRUE
dTF2 dWARING dWEI
TRUE TRUE TRUE
dWEI2 dWEI3 dYULE
TRUE TRUE TRUE
dZABB dZABI dZABNB
TRUE TRUE TRUE
dZAGA dZAIG dZALG
TRUE TRUE TRUE
dZANBI dZAP dZAPIG
TRUE TRUE TRUE
dZASICHEL dZAZIPF dZIBB
TRUE TRUE TRUE
dZIBI dZIBNB dZINBF
TRUE TRUE TRUE
dZINBI dZIP dZIP2
TRUE TRUE TRUE
dZIPF dZIPIG dZISICHEL
TRUE TRUE TRUE
EGB2 exGAUS EXP
TRUE TRUE TRUE
Family Family.d Family.p
TRUE TRUE TRUE
Family.q Family.r fittedMN
TRUE TRUE TRUE
flexDist GA GAF
TRUE TRUE TRUE
GAMLSS gamlss.family gamlss.family.default
TRUE TRUE TRUE
GB1 GB2 gen.Family
TRUE TRUE TRUE
gen.hazard GEOM GEOMo
TRUE TRUE TRUE
get_C GetBI_C GG
TRUE TRUE TRUE
GIG GP GPO
TRUE TRUE TRUE
GT GU hazardFun
TRUE FALSE TRUE
IG IGAMMA JSU
TRUE TRUE TRUE
JSUo LG LNO
TRUE TRUE TRUE
LO LOGITNO LOGNO
TRUE TRUE TRUE
LOGNO2 LQNO make.link.gamlss
TRUE TRUE TRUE
meanBEINF meanBEINF0 meanBEINF1
TRUE TRUE TRUE
meanBEOI meanBEZI meanZAGA
TRUE TRUE TRUE
meanZAIG MN3 MN4
TRUE TRUE TRUE
MN5 momentSK MULTIN
TRUE TRUE TRUE
NBF NBI NBII
TRUE TRUE TRUE
NET NO NO2
TRUE TRUE TRUE
NOF PARETO PARETO1
TRUE TRUE TRUE
PARETO1o PARETO2 PARETO2o
TRUE TRUE TRUE
pBB pBCCG pBCCGo
FALSE TRUE TRUE
pBCPE pBCPEo pBCT
TRUE TRUE TRUE
pBCTo pBE pBEINF
TRUE TRUE TRUE
pBEINF0 pBEINF1 pBEo
TRUE TRUE TRUE
pBEOI pBEZI pBI
TRUE TRUE TRUE
pBNB pDBI pDBURR12
TRUE TRUE TRUE
pDEL pDPO PE
TRUE TRUE TRUE
PE2 pEGB2 pexGAUS
TRUE TRUE TRUE
pEXP pGA pGAF
TRUE TRUE TRUE
pGB1 pGB2 pGEOM
TRUE TRUE TRUE
pGEOMo pGG pGIG
TRUE TRUE TRUE
pGP pGPO pGT
TRUE TRUE TRUE
pGU pIG PIG
FALSE TRUE TRUE
PIG2 pIGAMMA pJSU
TRUE TRUE TRUE
pJSUo pLG pLNO
TRUE TRUE TRUE
pLO pLOGITNO pLOGNO
TRUE TRUE TRUE
pLOGNO2 plotBEINF plotBEINF0
TRUE TRUE TRUE
plotBEINF1 plotBEOI plotBEZI
TRUE TRUE TRUE
plotCentileSK plotZAGA plotZAIG
TRUE TRUE TRUE
pLQNO pMN3 pMN4
TRUE TRUE TRUE
pMN5 pNBF pNBI
TRUE TRUE TRUE
pNBII pNET pNO
TRUE TRUE TRUE
pNO2 pNOF PO
TRUE TRUE TRUE
pPARETO pPARETO1 pPARETO1o
TRUE TRUE TRUE
pPARETO2 pPARETO2o pPE
TRUE TRUE TRUE
pPE2 pPIG pPIG2
TRUE TRUE TRUE
pPO pRG pRGE
TRUE TRUE TRUE
pSEP pSEP1 pSEP2
TRUE TRUE TRUE
pSEP3 pSEP4 pSHASH
TRUE TRUE TRUE
pSHASHo pSHASHo2 pSI
TRUE TRUE TRUE
pSICHEL pSIMPLEX pSN1
TRUE TRUE TRUE
pSN2 pSST pST1
TRUE TRUE TRUE
pST2 pST3 pST3C
TRUE TRUE TRUE
pST4 pST5 pTF
TRUE TRUE TRUE
pTF2 pWARING pWEI
TRUE TRUE TRUE
pWEI2 pWEI3 pYULE
TRUE TRUE TRUE
pZABB pZABI pZABNB
TRUE TRUE TRUE
pZAGA pZAIG pZALG
TRUE TRUE TRUE
pZANBI pZAP pZAPIG
TRUE TRUE TRUE
pZASICHEL pZAZIPF pZIBB
TRUE TRUE TRUE
pZIBI pZIBNB pZINBF
TRUE TRUE TRUE
pZINBI pZIP pZIP2
TRUE TRUE TRUE
pZIPF pZIPIG pZISICHEL
TRUE TRUE TRUE
qBB qBCCG qBCCGo
FALSE TRUE TRUE
qBCPE qBCPEo qBCT
TRUE TRUE TRUE
qBCTo qBE qBEINF
TRUE TRUE TRUE
qBEINF0 qBEINF1 qBEo
TRUE TRUE TRUE
qBEOI qBEZI qBI
TRUE TRUE TRUE
qBNB qDBI qDBURR12
TRUE TRUE TRUE
qDEL qDPO qEGB2
TRUE TRUE TRUE
qexGAUS qEXP qGA
TRUE TRUE TRUE
qGAF qGB1 qGB2
TRUE TRUE TRUE
qGEOM qGEOMo qGG
TRUE TRUE TRUE
qGIG qGP qGPO
TRUE TRUE TRUE
qGT qGU qIG
TRUE FALSE TRUE
qIGAMMA qJSU qJSUo
TRUE TRUE TRUE
qLG qLNO qLO
TRUE TRUE TRUE
qLOGITNO qLOGNO qLOGNO2
TRUE TRUE TRUE
qLQNO qMN3 qMN4
TRUE TRUE TRUE
qMN5 qNBF qNBI
TRUE TRUE TRUE
qNBII qNET qNO
TRUE TRUE TRUE
qNO2 qNOF qPARETO
TRUE TRUE TRUE
qPARETO1 qPARETO1o qPARETO2
TRUE TRUE TRUE
qPARETO2o qPE qPE2
TRUE TRUE TRUE
qPIG qPIG2 qPO
TRUE TRUE TRUE
qRG qRGE qSEP
TRUE TRUE TRUE
qSEP1 qSEP2 qSEP3
TRUE TRUE TRUE
qSEP4 qSHASH qSHASHo
TRUE TRUE TRUE
qSHASHo2 qSI qSICHEL
TRUE TRUE TRUE
qSIMPLEX qSN1 qSN2
TRUE TRUE TRUE
qSST qST1 qST2
TRUE TRUE TRUE
qST3 qST3C qST4
TRUE TRUE TRUE
qST5 qTF qTF2
TRUE TRUE TRUE
qWARING qWEI qWEI2
TRUE TRUE TRUE
qWEI3 qYULE qZABB
TRUE TRUE TRUE
qZABI qZABNB qZAGA
TRUE TRUE TRUE
qZAIG qZALG qZANBI
TRUE TRUE TRUE
qZAP qZAPIG qZASICHEL
TRUE TRUE TRUE
qZAZIPF qZIBB qZIBI
TRUE TRUE TRUE
qZIBNB qZINBF qZINBI
TRUE TRUE TRUE
qZIP qZIP2 qZIPF
TRUE TRUE TRUE
qZIPIG qZISICHEL rBB
TRUE TRUE TRUE
rBCCG rBCCGo rBCPE
TRUE TRUE TRUE
rBCPEo rBCT rBCTo
TRUE TRUE TRUE
rBE rBEINF rBEINF0
TRUE TRUE TRUE
rBEINF1 rBEo rBEOI
TRUE TRUE TRUE
rBEZI rBI rBNB
TRUE TRUE TRUE
rDBI rDBURR12 rDEL
TRUE TRUE TRUE
rDPO rEGB2 rexGAUS
TRUE TRUE TRUE
rEXP RG rGA
TRUE TRUE TRUE
rGAF rGB1 rGB2
TRUE TRUE TRUE
RGE rGEOM rGEOMo
TRUE TRUE TRUE
rGG rGIG rGP
TRUE TRUE TRUE
rGPO rGT rGU
TRUE TRUE FALSE
rIG rIGAMMA rJSU
TRUE TRUE TRUE
rJSUo rLG rLNO
TRUE TRUE TRUE
rLO rLOGITNO rLOGNO
TRUE TRUE TRUE
rLOGNO2 rLQNO rMN3
TRUE TRUE TRUE
rMN4 rMN5 rNBF
TRUE TRUE TRUE
rNBI rNBII rNET
TRUE TRUE TRUE
rNO rNO2 rNOF
TRUE TRUE TRUE
rPARETO rPARETO1 rPARETO1o
TRUE TRUE TRUE
rPARETO2 rPARETO2o rPE
TRUE TRUE TRUE
rPE2 rPIG rPIG2
TRUE TRUE TRUE
rPO rRG rRGE
TRUE TRUE TRUE
rSEP rSEP1 rSEP2
TRUE TRUE TRUE
rSEP3 rSEP4 rSHASH
TRUE TRUE TRUE
rSHASHo rSHASHo2 rSI
TRUE TRUE TRUE
rSICHEL rSIMPLEX rSN1
TRUE TRUE TRUE
rSN2 rSST rST1
TRUE TRUE TRUE
rST2 rST3 rST3C
TRUE TRUE TRUE
rST4 rST5 rTF
TRUE TRUE TRUE
rTF2 rWARING rWEI
TRUE TRUE TRUE
rWEI2 rWEI3 rYULE
TRUE TRUE TRUE
rZABB rZABI rZABNB
TRUE TRUE TRUE
rZAGA rZAIG rZALG
TRUE TRUE TRUE
rZANBI rZAP rZAPIG
TRUE TRUE TRUE
rZASICHEL rZAZIPF rZIBB
TRUE TRUE TRUE
rZIBI rZIBNB rZINBF
TRUE TRUE TRUE
rZINBI rZIP rZIP2
TRUE TRUE TRUE
rZIPF rZIPIG rZISICHEL
TRUE TRUE TRUE
SEP SEP1 SEP2
TRUE TRUE TRUE
SEP3 SEP4 SHASH
TRUE TRUE TRUE
SHASHo SHASHo2 show.link
TRUE TRUE TRUE
SI SICHEL SIMPLEX
TRUE TRUE TRUE
SN1 SN2 SST
TRUE TRUE TRUE
ST1 ST2 ST3
TRUE TRUE TRUE
ST3C ST4 ST5
TRUE TRUE TRUE
TF TF2 theoCentileSK
TRUE TRUE TRUE
tofyS tofySICHEL VSICHEL
TRUE TRUE TRUE
WARING WEI WEI2
TRUE TRUE TRUE
WEI3 YULE ZABB
TRUE TRUE TRUE
ZABI ZABNB ZAGA
TRUE TRUE TRUE
ZAIG ZALG ZANBI
TRUE TRUE TRUE
ZAP ZAPIG ZASICHEL
TRUE TRUE TRUE
ZAZIPF zetaP ZIBB
TRUE TRUE TRUE
ZIBI ZIBNB ZINBF
TRUE TRUE TRUE
ZINBI ZIP ZIP2
TRUE TRUE TRUE
ZIPF ZIPIG ZISICHEL
TRUE TRUE TRUE Examples
There are 83 help pages with examples, from 83 (100.00 %).
NEWS
The package has NEWS file and it is current.
License
The package uses .
Installation environment
System Info
| Field | Value |
|---|---|
| Image | rhub/ref-image |
| OS | Ubuntu 24.04.2 LTS |
| Platform | x86_64-pc-linux-gnu |
| System | x86_64, linux-gnu |
| Execution Time | 2025-03-19 03:30:51 UTC |
System information. Table about the system used to check the package.
R Session Info
Information about the R environment and capabilities:
R version 4.4.3 (2025-02-28)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 24.04.2 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so; LAPACK version 3.12.0
locale:
[1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8
[4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8
[7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C
time zone: UTC
tzcode source: system (glibc)
attached base packages:
[1] tools stats graphics grDevices utils datasets methods
[8] base
loaded via a namespace (and not attached):
[1] riskreports_0.0.0.9003 compiler_4.4.3 fastmap_1.2.0
[4] cli_3.6.4 htmltools_0.5.8.1 yaml_2.3.10
[7] rmarkdown_2.29 knitr_1.50 jsonlite_1.9.1
[10] xfun_0.51 digest_0.6.37 rlang_1.1.5
[13] evaluate_1.0.3 Platform used:
OS.type file.sep dynlib.ext GUI endian pkgType path.sep
"unix" "/" ".so" "X11" "little" "source" ":"
r_arch
"" R’s capabilities:
jpeg png tiff tcltk X11 aqua
TRUE TRUE TRUE TRUE FALSE FALSE
http/ftp sockets libxml fifo cledit iconv
TRUE TRUE FALSE TRUE FALSE TRUE
NLS Rprof profmem cairo ICU long.double
TRUE TRUE TRUE TRUE TRUE TRUE
libcurl
TRUE External software:
zlib
"1.3"
bzlib
"1.0.8, 13-Jul-2019"
xz
"5.4.5"
libdeflate
"1.19"
PCRE
"10.42 2022-12-11"
ICU
"74.2"
TRE
"TRE 0.8.0 R_fixes (BSD)"
iconv
"glibc 2.39"
readline
"8.2"
BLAS
"/usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3" Graphics external software:
cairo cairoFT pango
"1.18.0" "" "1.52.1"
libpng jpeg libtiff
"1.6.43" "8.0" "LIBTIFF, Version 4.5.1" Numerical characteristics of the machine:
double.eps double.neg.eps double.xmin
2.220446e-16 1.110223e-16 2.225074e-308
double.xmax double.base double.digits
1.797693e+308 2.000000e+00 5.300000e+01
double.rounding double.guard double.ulp.digits
5.000000e+00 0.000000e+00 -5.200000e+01
double.neg.ulp.digits double.exponent double.min.exp
-5.300000e+01 1.100000e+01 -1.022000e+03
double.max.exp integer.max sizeof.long
1.024000e+03 2.147484e+09 8.000000e+00
sizeof.longlong sizeof.longdouble sizeof.pointer
8.000000e+00 1.600000e+01 8.000000e+00
sizeof.time_t longdouble.eps longdouble.neg.eps
8.000000e+00 1.084202e-19 5.421011e-20
longdouble.digits longdouble.rounding longdouble.guard
6.400000e+01 5.000000e+00 0.000000e+00
longdouble.ulp.digits longdouble.neg.ulp.digits longdouble.exponent
-6.300000e+01 -6.400000e+01 1.500000e+01
longdouble.min.exp longdouble.max.exp
-1.638200e+04 1.638400e+04 Random number generation process:
[1] "Mersenne-Twister" "Inversion" "Rejection" Information about the environment
Environmental and options variables affect how package checks and software in it might behave. Here is the environmental variables when running this report
_R_CHECK_SYSTEM_CLOCK_
FALSE
ACCEPT_EULA Y
ACTIONS_RUNNER_ACTION_ARCHIVE_CACHE
/opt/actionarchivecache
AGENT_TOOLSDIRECTORY /opt/hostedtoolcache
ANDROID_HOME /usr/local/lib/android/sdk
ANDROID_NDK /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_HOME /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_LATEST_HOME
/usr/local/lib/android/sdk/ndk/28.0.13004108
ANDROID_NDK_ROOT /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_SDK_ROOT /usr/local/lib/android/sdk
ANT_HOME /usr/share/ant
AZURE_EXTENSION_DIR /opt/az/azcliextensions
BOOTSTRAP_HASKELL_NONINTERACTIVE
1
BUNDLE_EXT linux-amd64.deb
CHROME_BIN /usr/bin/google-chrome
CHROMEWEBDRIVER /usr/local/share/chromedriver-linux64
CI true
CONDA /usr/share/miniconda
DEBIAN_FRONTEND noninteractive
DENO_DOM_PLUGIN /opt/quarto/bin/tools/x86_64/deno_dom/libplugin.so
DENO_NO_UPDATE_CHECK 1
DENO_TLS_CA_STORE system,mozilla
DEPLOYMENT_BASEPATH /opt/runner
DOTNET_MULTILEVEL_LOOKUP
0
DOTNET_NOLOGO 1
DOTNET_SKIP_FIRST_TIME_EXPERIENCE
1
EDGEWEBDRIVER /usr/local/share/edge_driver
EDITOR vi
GECKOWEBDRIVER /usr/local/share/gecko_driver
GHCUP_INSTALL_BASE_PREFIX
/usr/local
GITHUB_ACTION __run_2
GITHUB_ACTION_REF
GITHUB_ACTION_REPOSITORY
GITHUB_ACTIONS true
GITHUB_ACTOR llrs-roche
GITHUB_ACTOR_ID 185338939
GITHUB_API_URL https://api.github.com
GITHUB_BASE_REF
GITHUB_ENV /home/runner/work/_temp/_runner_file_commands/set_env_2ce58585-a4b5-44f5-8f77-d87ad76a2637
GITHUB_EVENT_NAME schedule
GITHUB_EVENT_PATH /home/runner/work/_temp/_github_workflow/event.json
GITHUB_GRAPHQL_URL https://api.github.com/graphql
GITHUB_HEAD_REF
GITHUB_JOB main
GITHUB_OUTPUT /home/runner/work/_temp/_runner_file_commands/set_output_2ce58585-a4b5-44f5-8f77-d87ad76a2637
GITHUB_PATH /home/runner/work/_temp/_runner_file_commands/add_path_2ce58585-a4b5-44f5-8f77-d87ad76a2637
GITHUB_REF refs/heads/main
GITHUB_REF_NAME main
GITHUB_REF_PROTECTED false
GITHUB_REF_TYPE branch
GITHUB_REPOSITORY pharmaR/pharmapkgs
GITHUB_REPOSITORY_ID 798326913
GITHUB_REPOSITORY_OWNER
pharmaR
GITHUB_REPOSITORY_OWNER_ID
42115094
GITHUB_RETENTION_DAYS 90
GITHUB_RUN_ATTEMPT 1
GITHUB_RUN_ID 13938154436
GITHUB_RUN_NUMBER 139
GITHUB_SERVER_URL https://github.com
GITHUB_SHA e08b400d1a286e18e3bfb99262514016e0af1624
GITHUB_STATE /home/runner/work/_temp/_runner_file_commands/save_state_2ce58585-a4b5-44f5-8f77-d87ad76a2637
GITHUB_STEP_SUMMARY /home/runner/work/_temp/_runner_file_commands/step_summary_2ce58585-a4b5-44f5-8f77-d87ad76a2637
GITHUB_TRIGGERING_ACTOR
llrs-roche
GITHUB_WORKFLOW Update package repositories
GITHUB_WORKFLOW_REF pharmaR/pharmapkgs/.github/workflows/update-repos.yml@refs/heads/main
GITHUB_WORKFLOW_SHA e08b400d1a286e18e3bfb99262514016e0af1624
GITHUB_WORKSPACE /home/runner/work/pharmapkgs/pharmapkgs
GOROOT_1_21_X64 /opt/hostedtoolcache/go/1.21.13/x64
GOROOT_1_22_X64 /opt/hostedtoolcache/go/1.22.12/x64
GOROOT_1_23_X64 /opt/hostedtoolcache/go/1.23.7/x64
GRADLE_HOME /usr/share/gradle-8.13
HOME /home/runner
HOMEBREW_CLEANUP_PERIODIC_FULL_DAYS
3650
HOMEBREW_NO_AUTO_UPDATE
1
ImageOS ubuntu24
ImageVersion 20250309.1.0
INVOCATION_ID 6037dc8f08514ea9b696fae55211a51a
JAVA_HOME /usr/lib/jvm/temurin-17-jdk-amd64
JAVA_HOME_11_X64 /usr/lib/jvm/temurin-11-jdk-amd64
JAVA_HOME_17_X64 /usr/lib/jvm/temurin-17-jdk-amd64
JAVA_HOME_21_X64 /usr/lib/jvm/temurin-21-jdk-amd64
JAVA_HOME_8_X64 /usr/lib/jvm/temurin-8-jdk-amd64
JOURNAL_STREAM 8:8201
LANG C.UTF-8
LD_LIBRARY_PATH /opt/R/4.4.3/lib/R/lib:/usr/local/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/temurin-17-jdk-amd64/lib/server:/opt/R/4.4.3/lib/R/lib:/usr/local/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/temurin-17-jdk-amd64/lib/server
LN_S ln -s
LOGGER_LOG_LEVEL DEBUG
MAKE make
MEMORY_PRESSURE_WATCH /sys/fs/cgroup/system.slice/runner-provisioner.service/memory.pressure
MEMORY_PRESSURE_WRITE c29tZSAyMDAwMDAgMjAwMDAwMAA=
NOT_CRAN true
NVM_DIR /home/runner/.nvm
PAGER /usr/bin/pager
PATH /snap/bin:/home/runner/.local/bin:/opt/pipx_bin:/home/runner/.cargo/bin:/home/runner/.config/composer/vendor/bin:/usr/local/.ghcup/bin:/home/runner/.dotnet/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
PERFLOG_LOCATION_SETTING
RUNNER_PERFLOG
PHARMAPKGS_EXCLUDED_METRICS
assess_covr_coverage,assess_r_cmd_check
PHARMAPKGS_LIMIT 100
PHARMAPKGS_PLATFORM ubuntu-22.04
PHARMAPKGS_R_VERSION 4.4
PHARMAPKGS_REMOTE_REPO
https://cloud.r-project.org/
PIPX_BIN_DIR /opt/pipx_bin
PIPX_HOME /opt/pipx
PKGCACHE_HTTP_VERSION 2
PKGLOAD_PARENT_TEMPDIR
/tmp/Rtmp3gFRHN
POWERSHELL_DISTRIBUTION_CHANNEL
GitHub-Actions-ubuntu24
PROCESSX_PS1c2c6b8e354d_1742355047
YES
PWD /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_BIN_PATH /opt/quarto/bin
QUARTO_DENO /opt/quarto/bin/tools/x86_64/deno
QUARTO_DOCUMENT_PATH /home/runner/work/pharmapkgs/pharmapkgs/inst/report
QUARTO_PROFILE
QUARTO_PROJECT_DIR /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_PROJECT_ROOT /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_ROOT /
QUARTO_SHARE_PATH /opt/quarto/share
R_ARCH
R_BROWSER xdg-open
R_BZIPCMD /usr/bin/bzip2
R_DOC_DIR /opt/R/4.4.3/lib/R/doc
R_GZIPCMD /usr/bin/gzip
R_HOME /opt/R/4.4.3/lib/R
R_INCLUDE_DIR /opt/R/4.4.3/lib/R/include
R_LIB_FOR_PAK /opt/R/4.4.3/lib/R/site-library
R_LIBS_SITE /opt/R/4.4.3/lib/R/site-library
R_LIBS_USER /home/runner/work/_temp/Library
R_PAPERSIZE letter
R_PAPERSIZE_USER letter
R_PDFVIEWER /usr/bin/xdg-open
R_PLATFORM x86_64-pc-linux-gnu
R_PRINTCMD /usr/bin/lpr
R_RD4PDF times,inconsolata,hyper
R_SESSION_TMPDIR /tmp/RtmphnqgcL
R_SHARE_DIR /opt/R/4.4.3/lib/R/share
R_STRIP_SHARED_LIB strip --strip-unneeded
R_STRIP_STATIC_LIB strip --strip-debug
R_TEXI2DVICMD /usr/bin/texi2dvi
R_UNZIPCMD /usr/bin/unzip
R_ZIPCMD /usr/bin/zip
RUNNER_ARCH X64
RUNNER_ENVIRONMENT github-hosted
RUNNER_NAME GitHub-Actions-1000000597
RUNNER_OS Linux
RUNNER_PERFLOG /home/runner/perflog
RUNNER_TEMP /home/runner/work/_temp
RUNNER_TOOL_CACHE /opt/hostedtoolcache
RUNNER_TRACKING_ID github_d51345bf-bdf6-4dd6-baca-3c2af67f55c1
RUNNER_USER runner
RUNNER_WORKSPACE /home/runner/work/pharmapkgs
SED /usr/bin/sed
SELENIUM_JAR_PATH /usr/share/java/selenium-server.jar
SGX_AESM_ADDR 1
SHLVL 1
STATS_D true
STATS_D_D true
STATS_D_TC true
STATS_EXT true
STATS_EXTP https://provjobdprod.z13.web.core.windows.net/settings/provjobdsettings-latest/provjobd.data
STATS_PIP false
STATS_RDCL true
STATS_TRP true
STATS_UE true
STATS_V3PS true
STATS_VMD true
STATS_VMFE true
SWIFT_PATH /usr/share/swift/usr/bin
SYSTEMD_EXEC_PID 830
TAR /usr/bin/tar
TZ UTC
USER runner
VCPKG_INSTALLATION_ROOT
/usr/local/share/vcpkg
XDG_CONFIG_HOME /home/runner/.config
XDG_RUNTIME_DIR /run/user/1001These are the options set to generate the report:
$add.smooth
[1] TRUE
$bitmapType
[1] "cairo"
$browser
[1] "xdg-open"
$browserNLdisabled
[1] FALSE
$callr.condition_handler_cli_message
function (msg)
{
custom_handler <- getOption("cli.default_handler")
if (is.function(custom_handler)) {
custom_handler(msg)
}
else {
cli_server_default(msg)
}
}
<bytecode: 0x56330c41e330>
<environment: namespace:cli>
$catch.script.errors
[1] FALSE
$CBoundsCheck
[1] FALSE
$check.bounds
[1] FALSE
$citation.bibtex.max
[1] 1
$continue
[1] "+ "
$contrasts
unordered ordered
"contr.treatment" "contr.poly"
$covr.record_tests
[1] TRUE
$defaultPackages
[1] "datasets" "utils" "grDevices" "graphics" "stats" "methods"
$demo.ask
[1] "default"
$deparse.cutoff
[1] 60
$device
function (width = 7, height = 7, ...)
{
grDevices::pdf(NULL, width, height, ...)
}
<bytecode: 0x56330b9f4fb8>
<environment: namespace:knitr>
$device.ask.default
[1] FALSE
$digits
[1] 7
$dvipscmd
[1] "dvips"
$echo
[1] FALSE
$editor
[1] "vi"
$encoding
[1] "native.enc"
$example.ask
[1] "default"
$expressions
[1] 5000
$help.search.types
[1] "vignette" "demo" "help"
$help.try.all.packages
[1] FALSE
$htmltools.preserve.raw
[1] TRUE
$HTTPUserAgent
[1] "R/4.4.3 R (4.4.3 x86_64-pc-linux-gnu x86_64 linux-gnu) on GitHub Actions"
$internet.info
[1] 2
$keep.parse.data
[1] TRUE
$keep.parse.data.pkgs
[1] FALSE
$keep.source
[1] FALSE
$keep.source.pkgs
[1] FALSE
$knitr.in.progress
[1] TRUE
$locatorBell
[1] TRUE
$mailer
[1] "mailto"
$matprod
[1] "default"
$max.contour.segments
[1] 25000
$max.print
[1] 99999
$menu.graphics
[1] TRUE
$na.action
[1] "na.omit"
$Ncpus
[1] 1
$nwarnings
[1] 50
$OutDec
[1] "."
$pager
[1] "/opt/R/4.4.3/lib/R/bin/pager"
$papersize
[1] "letter"
$PCRE_limit_recursion
[1] NA
$PCRE_study
[1] FALSE
$PCRE_use_JIT
[1] TRUE
$pdfviewer
[1] "/usr/bin/xdg-open"
$pkgType
[1] "source"
$printcmd
[1] "/usr/bin/lpr"
$prompt
[1] "> "
$repos
CRAN
"https://cran.rstudio.com"
$rl_word_breaks
[1] " \t\n\"\\'`><=%;,|&{()}"
$rlang_trace_top_env
<environment: R_GlobalEnv>
$scipen
[1] 0
$show.coef.Pvalues
[1] TRUE
$show.error.messages
[1] TRUE
$show.signif.stars
[1] TRUE
$showErrorCalls
[1] TRUE
$showNCalls
[1] 50
$showWarnCalls
[1] FALSE
$str
$str$strict.width
[1] "no"
$str$digits.d
[1] 3
$str$vec.len
[1] 4
$str$list.len
[1] 99
$str$deparse.lines
NULL
$str$drop.deparse.attr
[1] TRUE
$str$formatNum
function (x, ...)
format(x, trim = TRUE, drop0trailing = TRUE, ...)
<environment: 0x56330b8f9688>
$str.dendrogram.last
[1] "`"
$texi2dvi
[1] "/usr/bin/texi2dvi"
$tikzMetricsDictionary
[1] "validation_report_gamlss.dist_v6.1.1-tikzDictionary"
$timeout
[1] 60
$try.outFile
A connection with
description ""
class "file"
mode "w+b"
text "binary"
opened "opened"
can read "yes"
can write "yes"
$ts.eps
[1] 1e-05
$ts.S.compat
[1] FALSE
$unzip
[1] "/usr/bin/unzip"
$useFancyQuotes
[1] FALSE
$verbose
[1] FALSE
$warn
[1] 0
$warning.length
[1] 1000
$warnPartialMatchArgs
[1] FALSE
$warnPartialMatchAttr
[1] FALSE
$warnPartialMatchDollar
[1] FALSE
$width
[1] 80