Validation Report - flexsurv@2.3.2
Context
This report is fully automated and builds on rhub/ref-image image. Documents the installation of this package on an open source R environment, focusing on:
- Installation environment description
- Testing coverage
It is limited to assess whether unit tests and documentation are present and can execute without error. An assessment would be required that the tests and documentation are meaningful.
Package flexsurv
Metric based risk assessment
The following metrics are derived from the riskmetric R package.
| has_news | 1 |
| news_current | TRUE |
| exported_namespace | 191 |
| has_vignettes | 11 |
| export_help | 191 |
| has_website | TRUE |
| has_maintainer | Christopher Jackson chris.jackson@mrc-bsu.cam.ac.uk |
| bugs_status | 0.7666667 |
| assess_size_codebase | 6843 |
| has_source_control | https://github.com/chjackson/flexsurv |
| has_bug_reports_url | 1 |
| downloads_1yr | 85877 |
| reverse_dependencies | 64 |
| has_examples | 0.9746835 |
| dependencies | 22 |
| license | GPL (>= 2) |
Package general assessment: Coverage, check results, size, download the last year, reverse dependencies and number of dependencies.
Dependencies
Overall the package has these dependencies:
| package | type | |
|---|---|---|
| 1 | survival | Depends |
| 2 | assertthat | Imports |
| 3 | deSolve | Imports |
| 4 | generics | Imports |
| 5 | magrittr | Imports |
| 6 | mstate (>= 0.2.10) | Imports |
| 7 | Matrix | Imports |
| 8 | muhaz | Imports |
| 9 | mvtnorm | Imports |
| 10 | numDeriv | Imports |
| 11 | quadprog | Imports |
| 12 | Rcpp (>= 0.11.5) | Imports |
| 13 | rlang | Imports |
| 14 | rstpm2 | Imports |
| 15 | purrr | Imports |
| 16 | statmod | Imports |
| 17 | tibble | Imports |
| 18 | tidyr | Imports |
| 19 | dplyr | Imports |
| 20 | tidyselect | Imports |
| 21 | ggplot2 | Imports |
| 22 | Rcpp | LinkingTo |
Package dependencies
Reverse dependencies
Overall the package has 64 reverse dependencies:
admix, AHSurv, AmoudSurv, bayesCureRateModel, burgle, butcher, censored, CopulaCenR, Countr, cyclomort, debest, doublIn, easysurv, educineq, eventPred, EventPredInCure, fic, fitteR, flexsurvcure, ggamma, gompertztrunc, HCTDesign, hdcuremodels, heemod, hesim, iclogcondist, icpack, maicplus, marginaleffects, mixcure, mlt.docreg, MNB, mortAAR, msm, multinma, OneArm2stage, parmsurvfit, parTimeROC, pcvr, psborrow, psborrow2, psc, psm3mkv, reslife, riskRegression, RoBSA, rocTree, rprev, rstpm2, rsurv, SEI, SHELF, simsurv, smcfcs, Surrogate, surv2sampleComp, survex, survHE, survivalSL, survminer, tidyAML, tram, vsd, WARDEN
Namespace
Overall the package has 191 exported objects. 191 are documented:
AICc AICC ajfit
TRUE TRUE TRUE
ajfit_flexsurvmix ajfit_fmsm augment
TRUE TRUE TRUE
basis bootci.fmsm coxsnell_flexsurvreg
TRUE TRUE TRUE
dbasis dfss dgenf
TRUE TRUE TRUE
dgenf.orig dgengamma dgengamma.orig
TRUE TRUE TRUE
dgompertz dllogis dsurvspline
TRUE TRUE TRUE
dsurvspline0 dsurvspline1 dsurvspline2
TRUE TRUE TRUE
dsurvspline3 dsurvspline4 dsurvspline5
TRUE TRUE TRUE
dsurvspline6 dsurvspline7 dweibullPH
TRUE TRUE TRUE
flexsurv.dists flexsurvmix flexsurvreg
TRUE TRUE TRUE
flexsurvrtrunc flexsurvspline fmixmsm
TRUE TRUE TRUE
fmsm fss glance
TRUE TRUE TRUE
hexp Hexp hgamma
TRUE TRUE TRUE
Hgamma hgenf Hgenf
TRUE TRUE TRUE
hgenf.orig Hgenf.orig hgengamma
TRUE TRUE TRUE
Hgengamma hgengamma.orig Hgengamma.orig
TRUE TRUE TRUE
hgompertz Hgompertz hllogis
TRUE TRUE TRUE
Hllogis hlnorm Hlnorm
TRUE TRUE TRUE
hr_flexsurvreg hsurvspline Hsurvspline
TRUE TRUE TRUE
hsurvspline0 Hsurvspline0 hsurvspline1
TRUE TRUE TRUE
Hsurvspline1 hsurvspline2 Hsurvspline2
TRUE TRUE TRUE
hsurvspline3 Hsurvspline3 hsurvspline4
TRUE TRUE TRUE
Hsurvspline4 hsurvspline5 Hsurvspline5
TRUE TRUE TRUE
hsurvspline6 Hsurvspline6 hsurvspline7
TRUE TRUE TRUE
Hsurvspline7 hweibull Hweibull
TRUE TRUE TRUE
hweibullPH HweibullPH mean_exp
TRUE TRUE TRUE
mean_flexsurvmix mean_gamma mean_genf
TRUE TRUE TRUE
mean_genf.orig mean_gengamma mean_gengamma.orig
TRUE TRUE TRUE
mean_gompertz mean_llogis mean_lnorm
TRUE TRUE TRUE
mean_survspline mean_survspline0 mean_survspline1
TRUE TRUE TRUE
mean_survspline2 mean_survspline3 mean_survspline4
TRUE TRUE TRUE
mean_survspline5 mean_survspline6 mean_survspline7
TRUE TRUE TRUE
mean_weibull mean_weibullPH meanfinal_fmixmsm
TRUE TRUE TRUE
msfit.flexsurvreg normboot.flexsurvreg p_flexsurvmix
TRUE TRUE TRUE
pars.fmsm pdf_flexsurvmix pfinal_fmsm
TRUE TRUE TRUE
pgenf pgenf.orig pgengamma
TRUE TRUE TRUE
pgengamma.orig pgompertz pllogis
TRUE TRUE TRUE
pmatrix.fs pmatrix.simfs ppath_fmixmsm
TRUE TRUE TRUE
probs_flexsurvmix psurvspline psurvspline0
TRUE TRUE TRUE
psurvspline1 psurvspline2 psurvspline3
TRUE TRUE TRUE
psurvspline4 psurvspline5 psurvspline6
TRUE TRUE TRUE
psurvspline7 pweibullPH qfinal_fmixmsm
TRUE TRUE TRUE
qgeneric qgenf qgenf.orig
TRUE TRUE TRUE
qgengamma qgengamma.orig qgompertz
TRUE TRUE TRUE
qllogis qsurvspline qsurvspline0
TRUE TRUE TRUE
qsurvspline1 qsurvspline2 qsurvspline3
TRUE TRUE TRUE
qsurvspline4 qsurvspline5 qsurvspline6
TRUE TRUE TRUE
qsurvspline7 quantile_flexsurvmix qweibullPH
TRUE TRUE TRUE
rgenf rgenf.orig rgengamma
TRUE TRUE TRUE
rgengamma.orig rgompertz rllogis
TRUE TRUE TRUE
rmst_exp rmst_flexsurvmix rmst_gamma
TRUE TRUE TRUE
rmst_generic rmst_genf rmst_genf.orig
TRUE TRUE TRUE
rmst_gengamma rmst_gengamma.orig rmst_gompertz
TRUE TRUE TRUE
rmst_llogis rmst_lnorm rmst_survspline
TRUE TRUE TRUE
rmst_survspline0 rmst_survspline1 rmst_survspline2
TRUE TRUE TRUE
rmst_survspline3 rmst_survspline4 rmst_survspline5
TRUE TRUE TRUE
rmst_survspline6 rmst_survspline7 rmst_weibull
TRUE TRUE TRUE
rmst_weibullPH rsurvspline rsurvspline0
TRUE TRUE TRUE
rsurvspline1 rsurvspline2 rsurvspline3
TRUE TRUE TRUE
rsurvspline4 rsurvspline5 rsurvspline6
TRUE TRUE TRUE
rsurvspline7 rweibullPH sim.fmsm
TRUE TRUE TRUE
simfinal_fmsm simfs_bytrans standsurv
TRUE TRUE TRUE
survrtrunc tidy totlos.fs
TRUE TRUE TRUE
totlos.simfs unroll.function
TRUE TRUE Examples
There are 77 help pages with examples, from 79 (97.47 %).
NEWS
The package has NEWS file and it is current.
License
The package uses .
Installation environment
System Info
| Field | Value |
|---|---|
| Image | rhub/ref-image |
| OS | Ubuntu 24.04.2 LTS |
| Platform | x86_64-pc-linux-gnu |
| System | x86_64, linux-gnu |
| Execution Time | 2025-03-04 08:00:53 UTC |
System information. Table about the system used to check the package.
R Session Info
Information about the R environment and capabilities:
R version 4.4.3 (2025-02-28)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 24.04.2 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so; LAPACK version 3.12.0
locale:
[1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8
[4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8
[7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C
time zone: UTC
tzcode source: system (glibc)
attached base packages:
[1] tools stats graphics grDevices utils datasets methods
[8] base
loaded via a namespace (and not attached):
[1] riskreports_0.0.0.9003 compiler_4.4.3 fastmap_1.2.0
[4] cli_3.6.4 htmltools_0.5.8.1 yaml_2.3.10
[7] rmarkdown_2.29 knitr_1.49 jsonlite_1.9.1
[10] xfun_0.51 digest_0.6.37 rlang_1.1.5
[13] evaluate_1.0.3 Platform used:
OS.type file.sep dynlib.ext GUI endian pkgType path.sep
"unix" "/" ".so" "X11" "little" "source" ":"
r_arch
"" R’s capabilities:
jpeg png tiff tcltk X11 aqua
TRUE TRUE TRUE TRUE FALSE FALSE
http/ftp sockets libxml fifo cledit iconv
TRUE TRUE FALSE TRUE FALSE TRUE
NLS Rprof profmem cairo ICU long.double
TRUE TRUE TRUE TRUE TRUE TRUE
libcurl
TRUE External software:
zlib
"1.3"
bzlib
"1.0.8, 13-Jul-2019"
xz
"5.4.5"
libdeflate
"1.19"
PCRE
"10.42 2022-12-11"
ICU
"74.2"
TRE
"TRE 0.8.0 R_fixes (BSD)"
iconv
"glibc 2.39"
readline
"8.2"
BLAS
"/usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3" Graphics external software:
cairo cairoFT pango
"1.18.0" "" "1.52.1"
libpng jpeg libtiff
"1.6.43" "8.0" "LIBTIFF, Version 4.5.1" Numerical characteristics of the machine:
double.eps double.neg.eps double.xmin
2.220446e-16 1.110223e-16 2.225074e-308
double.xmax double.base double.digits
1.797693e+308 2.000000e+00 5.300000e+01
double.rounding double.guard double.ulp.digits
5.000000e+00 0.000000e+00 -5.200000e+01
double.neg.ulp.digits double.exponent double.min.exp
-5.300000e+01 1.100000e+01 -1.022000e+03
double.max.exp integer.max sizeof.long
1.024000e+03 2.147484e+09 8.000000e+00
sizeof.longlong sizeof.longdouble sizeof.pointer
8.000000e+00 1.600000e+01 8.000000e+00
sizeof.time_t longdouble.eps longdouble.neg.eps
8.000000e+00 1.084202e-19 5.421011e-20
longdouble.digits longdouble.rounding longdouble.guard
6.400000e+01 5.000000e+00 0.000000e+00
longdouble.ulp.digits longdouble.neg.ulp.digits longdouble.exponent
-6.300000e+01 -6.400000e+01 1.500000e+01
longdouble.min.exp longdouble.max.exp
-1.638200e+04 1.638400e+04 Random number generation process:
[1] "Mersenne-Twister" "Inversion" "Rejection" Information about the environment
Environmental and options variables affect how package checks and software in it might behave. Here is the environmental variables when running this report
_R_CHECK_SYSTEM_CLOCK_
FALSE
ACCEPT_EULA Y
ACTIONS_RUNNER_ACTION_ARCHIVE_CACHE
/opt/actionarchivecache
AGENT_TOOLSDIRECTORY /opt/hostedtoolcache
ANDROID_HOME /usr/local/lib/android/sdk
ANDROID_NDK /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_HOME /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_LATEST_HOME
/usr/local/lib/android/sdk/ndk/28.0.13004108
ANDROID_NDK_ROOT /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_SDK_ROOT /usr/local/lib/android/sdk
ANT_HOME /usr/share/ant
AZURE_EXTENSION_DIR /opt/az/azcliextensions
BOOTSTRAP_HASKELL_NONINTERACTIVE
1
BUNDLE_EXT linux-amd64.deb
CHROME_BIN /usr/bin/google-chrome
CHROMEWEBDRIVER /usr/local/share/chromedriver-linux64
CI true
CONDA /usr/share/miniconda
DEBIAN_FRONTEND noninteractive
DENO_DOM_PLUGIN /opt/quarto/bin/tools/x86_64/deno_dom/libplugin.so
DENO_NO_UPDATE_CHECK 1
DENO_TLS_CA_STORE system,mozilla
DEPLOYMENT_BASEPATH /opt/runner
DOTNET_MULTILEVEL_LOOKUP
0
DOTNET_NOLOGO 1
DOTNET_SKIP_FIRST_TIME_EXPERIENCE
1
EDGEWEBDRIVER /usr/local/share/edge_driver
EDITOR vi
GECKOWEBDRIVER /usr/local/share/gecko_driver
GHCUP_INSTALL_BASE_PREFIX
/usr/local
GITHUB_ACTION __run_2
GITHUB_ACTION_REF
GITHUB_ACTION_REPOSITORY
GITHUB_ACTIONS true
GITHUB_ACTOR Gotfrid
GITHUB_ACTOR_ID 8464262
GITHUB_API_URL https://api.github.com
GITHUB_BASE_REF
GITHUB_ENV /home/runner/work/_temp/_runner_file_commands/set_env_b858c573-b148-41d6-b975-66c5e3aabe8c
GITHUB_EVENT_NAME workflow_dispatch
GITHUB_EVENT_PATH /home/runner/work/_temp/_github_workflow/event.json
GITHUB_GRAPHQL_URL https://api.github.com/graphql
GITHUB_HEAD_REF
GITHUB_JOB main
GITHUB_OUTPUT /home/runner/work/_temp/_runner_file_commands/set_output_b858c573-b148-41d6-b975-66c5e3aabe8c
GITHUB_PATH /home/runner/work/_temp/_runner_file_commands/add_path_b858c573-b148-41d6-b975-66c5e3aabe8c
GITHUB_REF refs/heads/main
GITHUB_REF_NAME main
GITHUB_REF_PROTECTED false
GITHUB_REF_TYPE branch
GITHUB_REPOSITORY pharmaR/pharmapkgs
GITHUB_REPOSITORY_ID 798326913
GITHUB_REPOSITORY_OWNER
pharmaR
GITHUB_REPOSITORY_OWNER_ID
42115094
GITHUB_RETENTION_DAYS 90
GITHUB_RUN_ATTEMPT 1
GITHUB_RUN_ID 13648817444
GITHUB_RUN_NUMBER 117
GITHUB_SERVER_URL https://github.com
GITHUB_SHA ae58d84ad8e3c0516c368e41dbfe193cce0a7d87
GITHUB_STATE /home/runner/work/_temp/_runner_file_commands/save_state_b858c573-b148-41d6-b975-66c5e3aabe8c
GITHUB_STEP_SUMMARY /home/runner/work/_temp/_runner_file_commands/step_summary_b858c573-b148-41d6-b975-66c5e3aabe8c
GITHUB_TRIGGERING_ACTOR
Gotfrid
GITHUB_WORKFLOW Update package repositories
GITHUB_WORKFLOW_REF pharmaR/pharmapkgs/.github/workflows/update-repos.yml@refs/heads/main
GITHUB_WORKFLOW_SHA ae58d84ad8e3c0516c368e41dbfe193cce0a7d87
GITHUB_WORKSPACE /home/runner/work/pharmapkgs/pharmapkgs
GOROOT_1_21_X64 /opt/hostedtoolcache/go/1.21.13/x64
GOROOT_1_22_X64 /opt/hostedtoolcache/go/1.22.12/x64
GOROOT_1_23_X64 /opt/hostedtoolcache/go/1.23.6/x64
GRADLE_HOME /usr/share/gradle-8.12.1
HOME /home/runner
HOMEBREW_CLEANUP_PERIODIC_FULL_DAYS
3650
HOMEBREW_NO_AUTO_UPDATE
1
ImageOS ubuntu24
ImageVersion 20250223.1.0
INVOCATION_ID c9869e930cfd4356b1129b251df7d1bb
JAVA_HOME /usr/lib/jvm/temurin-17-jdk-amd64
JAVA_HOME_11_X64 /usr/lib/jvm/temurin-11-jdk-amd64
JAVA_HOME_17_X64 /usr/lib/jvm/temurin-17-jdk-amd64
JAVA_HOME_21_X64 /usr/lib/jvm/temurin-21-jdk-amd64
JAVA_HOME_8_X64 /usr/lib/jvm/temurin-8-jdk-amd64
JOURNAL_STREAM 8:7430
LANG C.UTF-8
LD_LIBRARY_PATH /opt/R/4.4.3/lib/R/lib:/usr/local/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/temurin-17-jdk-amd64/lib/server:/opt/R/4.4.3/lib/R/lib:/usr/local/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/temurin-17-jdk-amd64/lib/server
LN_S ln -s
LOGGER_LOG_LEVEL DEBUG
MAKE make
MEMORY_PRESSURE_WATCH /sys/fs/cgroup/system.slice/runner-provisioner.service/memory.pressure
MEMORY_PRESSURE_WRITE c29tZSAyMDAwMDAgMjAwMDAwMAA=
NOT_CRAN true
NVM_DIR /home/runner/.nvm
PAGER /usr/bin/pager
PATH /snap/bin:/home/runner/.local/bin:/opt/pipx_bin:/home/runner/.cargo/bin:/home/runner/.config/composer/vendor/bin:/usr/local/.ghcup/bin:/home/runner/.dotnet/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
PERFLOG_LOCATION_SETTING
RUNNER_PERFLOG
PHARMAPKGS_EXCLUDED_METRICS
assess_covr_coverage,assess_r_cmd_check
PHARMAPKGS_LIMIT 50
PHARMAPKGS_PLATFORM ubuntu-22.04
PHARMAPKGS_R_VERSION 4.4
PHARMAPKGS_REMOTE_REPO
https://cloud.r-project.org/
PIPX_BIN_DIR /opt/pipx_bin
PIPX_HOME /opt/pipx
PKGCACHE_HTTP_VERSION 2
PKGLOAD_PARENT_TEMPDIR
/tmp/RtmpDz76EV
POWERSHELL_DISTRIBUTION_CHANNEL
GitHub-Actions-ubuntu24
PROCESSX_PS1c4570ac5dcc_1741075249
YES
PWD /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_BIN_PATH /opt/quarto/bin
QUARTO_DENO /opt/quarto/bin/tools/x86_64/deno
QUARTO_DOCUMENT_PATH /home/runner/work/pharmapkgs/pharmapkgs/inst/report
QUARTO_PROFILE
QUARTO_PROJECT_DIR /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_PROJECT_ROOT /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_ROOT /
QUARTO_SHARE_PATH /opt/quarto/share
R_ARCH
R_BROWSER xdg-open
R_BZIPCMD /usr/bin/bzip2
R_DOC_DIR /opt/R/4.4.3/lib/R/doc
R_GZIPCMD /usr/bin/gzip
R_HOME /opt/R/4.4.3/lib/R
R_INCLUDE_DIR /opt/R/4.4.3/lib/R/include
R_LIB_FOR_PAK /opt/R/4.4.3/lib/R/site-library
R_LIBS_SITE /opt/R/4.4.3/lib/R/site-library
R_LIBS_USER /home/runner/work/_temp/Library
R_PAPERSIZE letter
R_PAPERSIZE_USER letter
R_PDFVIEWER /usr/bin/xdg-open
R_PLATFORM x86_64-pc-linux-gnu
R_PRINTCMD /usr/bin/lpr
R_RD4PDF times,inconsolata,hyper
R_SESSION_TMPDIR /tmp/RtmpszY72H
R_SHARE_DIR /opt/R/4.4.3/lib/R/share
R_STRIP_SHARED_LIB strip --strip-unneeded
R_STRIP_STATIC_LIB strip --strip-debug
R_TEXI2DVICMD /usr/bin/texi2dvi
R_UNZIPCMD /usr/bin/unzip
R_ZIPCMD /usr/bin/zip
RUNNER_ARCH X64
RUNNER_ENVIRONMENT github-hosted
RUNNER_NAME GitHub Actions 3
RUNNER_OS Linux
RUNNER_PERFLOG /home/runner/perflog
RUNNER_TEMP /home/runner/work/_temp
RUNNER_TOOL_CACHE /opt/hostedtoolcache
RUNNER_TRACKING_ID github_e10f6c8f-d55e-431c-92e9-e221dec71484
RUNNER_USER runner
RUNNER_WORKSPACE /home/runner/work/pharmapkgs
SED /usr/bin/sed
SELENIUM_JAR_PATH /usr/share/java/selenium-server.jar
SGX_AESM_ADDR 1
SHLVL 1
STATS_D true
STATS_D_D true
STATS_D_TC true
STATS_EXT true
STATS_EXTP https://provjobdprod.z13.web.core.windows.net/settings/provjobdsettings-latest/provjobd.data
STATS_PIP false
STATS_RDCL true
STATS_TRP true
STATS_UE true
STATS_V3PS true
STATS_VMD true
STATS_VMFE true
SWIFT_PATH /usr/share/swift/usr/bin
SYSTEMD_EXEC_PID 833
TAR /usr/bin/tar
TZ UTC
USER runner
VCPKG_INSTALLATION_ROOT
/usr/local/share/vcpkg
XDG_CONFIG_HOME /home/runner/.config
XDG_RUNTIME_DIR /run/user/1001These are the options set to generate the report:
$add.smooth
[1] TRUE
$bitmapType
[1] "cairo"
$browser
[1] "xdg-open"
$browserNLdisabled
[1] FALSE
$callr.condition_handler_cli_message
function (msg)
{
custom_handler <- getOption("cli.default_handler")
if (is.function(custom_handler)) {
custom_handler(msg)
}
else {
cli_server_default(msg)
}
}
<bytecode: 0x557138220330>
<environment: namespace:cli>
$catch.script.errors
[1] FALSE
$CBoundsCheck
[1] FALSE
$check.bounds
[1] FALSE
$citation.bibtex.max
[1] 1
$continue
[1] "+ "
$contrasts
unordered ordered
"contr.treatment" "contr.poly"
$covr.record_tests
[1] TRUE
$defaultPackages
[1] "datasets" "utils" "grDevices" "graphics" "stats" "methods"
$demo.ask
[1] "default"
$deparse.cutoff
[1] 60
$device
function (width = 7, height = 7, ...)
{
grDevices::pdf(NULL, width, height, ...)
}
<bytecode: 0x5571378180f8>
<environment: namespace:knitr>
$device.ask.default
[1] FALSE
$digits
[1] 7
$dvipscmd
[1] "dvips"
$echo
[1] FALSE
$editor
[1] "vi"
$encoding
[1] "native.enc"
$example.ask
[1] "default"
$expressions
[1] 5000
$help.search.types
[1] "vignette" "demo" "help"
$help.try.all.packages
[1] FALSE
$htmltools.preserve.raw
[1] TRUE
$HTTPUserAgent
[1] "R/4.4.3 R (4.4.3 x86_64-pc-linux-gnu x86_64 linux-gnu) on GitHub Actions"
$internet.info
[1] 2
$keep.parse.data
[1] TRUE
$keep.parse.data.pkgs
[1] FALSE
$keep.source
[1] FALSE
$keep.source.pkgs
[1] FALSE
$knitr.in.progress
[1] TRUE
$locatorBell
[1] TRUE
$mailer
[1] "mailto"
$matprod
[1] "default"
$max.contour.segments
[1] 25000
$max.print
[1] 99999
$menu.graphics
[1] TRUE
$na.action
[1] "na.omit"
$Ncpus
[1] 1
$nwarnings
[1] 50
$OutDec
[1] "."
$pager
[1] "/opt/R/4.4.3/lib/R/bin/pager"
$papersize
[1] "letter"
$PCRE_limit_recursion
[1] NA
$PCRE_study
[1] FALSE
$PCRE_use_JIT
[1] TRUE
$pdfviewer
[1] "/usr/bin/xdg-open"
$pkgType
[1] "source"
$printcmd
[1] "/usr/bin/lpr"
$prompt
[1] "> "
$repos
CRAN
"https://cran.rstudio.com"
$rl_word_breaks
[1] " \t\n\"\\'`><=%;,|&{()}"
$rlang_trace_top_env
<environment: R_GlobalEnv>
$scipen
[1] 0
$show.coef.Pvalues
[1] TRUE
$show.error.messages
[1] TRUE
$show.signif.stars
[1] TRUE
$showErrorCalls
[1] TRUE
$showNCalls
[1] 50
$showWarnCalls
[1] FALSE
$str
$str$strict.width
[1] "no"
$str$digits.d
[1] 3
$str$vec.len
[1] 4
$str$list.len
[1] 99
$str$deparse.lines
NULL
$str$drop.deparse.attr
[1] TRUE
$str$formatNum
function (x, ...)
format(x, trim = TRUE, drop0trailing = TRUE, ...)
<environment: 0x5571376fb688>
$str.dendrogram.last
[1] "`"
$texi2dvi
[1] "/usr/bin/texi2dvi"
$tikzMetricsDictionary
[1] "validation_report_flexsurv_v2.3.2-tikzDictionary"
$timeout
[1] 60
$try.outFile
A connection with
description ""
class "file"
mode "w+b"
text "binary"
opened "opened"
can read "yes"
can write "yes"
$ts.eps
[1] 1e-05
$ts.S.compat
[1] FALSE
$unzip
[1] "/usr/bin/unzip"
$useFancyQuotes
[1] FALSE
$verbose
[1] FALSE
$warn
[1] 0
$warning.length
[1] 1000
$warnPartialMatchArgs
[1] FALSE
$warnPartialMatchAttr
[1] FALSE
$warnPartialMatchDollar
[1] FALSE
$width
[1] 80