Validation Report - fasstr@0.5.3
Context
This report is fully automated and builds on rhub/ref-image image. Documents the installation of this package on an open source R environment, focusing on:
- Installation environment description
- Testing coverage
It is limited to assess whether unit tests and documentation are present and can execute without error. An assessment would be required that the tests and documentation are meaningful.
Package fasstr
Metric based risk assessment
The following metrics are derived from the riskmetric R package.
| has_news | 1 |
| news_current | TRUE |
| exported_namespace | 68 |
| has_vignettes | 12 |
| export_help | 68 |
| has_website | TRUE |
| has_maintainer | Jon Goetz jon.goetz@gov.bc.ca |
| bugs_status | subscript out of bounds |
| has_source_control | https://github.com/bcgov/fasstr |
| has_bug_reports_url | 1 |
| downloads_1yr | 5633 |
| reverse_dependencies | 0 |
| has_examples | 0.9852941 |
| dependencies | 15 |
| license | Apache License 2.0 |
Package general assessment: Coverage, check results, size, download the last year, reverse dependencies and number of dependencies.
Dependencies
Overall the package has these dependencies:
| package | type | |
|---|---|---|
| 1 | dplyr (>= 0.8.1) | Imports |
| 2 | e1071 (>= 1.7.0.1) | Imports |
| 3 | fitdistrplus (>= 1.2-1) | Imports |
| 4 | ggplot2 (>= 3.1.0) | Imports |
| 5 | grDevices | Imports |
| 6 | lubridate | Imports |
| 7 | openxlsx (>= 4.1.0) | Imports |
| 8 | PearsonDS (>= 1.1) | Imports |
| 9 | plyr (>= 1.8.4) | Imports |
| 10 | purrr (>= 0.3.2) | Imports |
| 11 | RcppRoll (>= 0.3.0) | Imports |
| 12 | scales (>= 1.0.0) | Imports |
| 13 | tidyhydat (>= 0.4.0) | Imports |
| 14 | tidyr (>= 0.8.3) | Imports |
| 15 | zyp (>= 0.10.1.1) | Imports |
Package dependencies
Reverse dependencies
Overall the package has 0 reverse dependencies:
Namespace
Overall the package has 68 exported objects. 67 are documented:
%>% add_basin_area
FALSE TRUE
add_cumulative_volume add_cumulative_yield
TRUE TRUE
add_daily_volume add_daily_yield
TRUE TRUE
add_date_variables add_rolling_means
TRUE TRUE
add_seasons calc_all_annual_stats
TRUE TRUE
calc_annual_cumulative_stats calc_annual_extremes
TRUE TRUE
calc_annual_flow_timing calc_annual_highflows
TRUE TRUE
calc_annual_lowflows calc_annual_normal_days
TRUE TRUE
calc_annual_outside_normal calc_annual_peaks
TRUE TRUE
calc_annual_stats calc_daily_cumulative_stats
TRUE TRUE
calc_daily_stats calc_flow_percentile
TRUE TRUE
calc_longterm_daily_stats calc_longterm_mean
TRUE TRUE
calc_longterm_monthly_stats calc_longterm_percentile
TRUE TRUE
calc_monthly_cumulative_stats calc_monthly_stats
TRUE TRUE
compute_annual_frequencies compute_annual_trends
TRUE TRUE
compute_frequency_analysis compute_frequency_quantile
TRUE TRUE
compute_full_analysis compute_hydat_peak_frequencies
TRUE TRUE
fill_missing_dates plot_annual_cumulative_stats
TRUE TRUE
plot_annual_extremes plot_annual_extremes_year
TRUE TRUE
plot_annual_flow_timing plot_annual_flow_timing_year
TRUE TRUE
plot_annual_highflows plot_annual_lowflows
TRUE TRUE
plot_annual_means plot_annual_normal_days
TRUE TRUE
plot_annual_normal_days_year plot_annual_outside_normal
TRUE TRUE
plot_annual_stats plot_annual_stats2
TRUE TRUE
plot_annual_symbols plot_daily_cumulative_stats
TRUE TRUE
plot_daily_stats plot_data_screening
TRUE TRUE
plot_flow_data plot_flow_data_symbols
TRUE TRUE
plot_flow_duration plot_longterm_daily_stats
TRUE TRUE
plot_longterm_monthly_stats plot_missing_dates
TRUE TRUE
plot_monthly_cumulative_stats plot_monthly_means
TRUE TRUE
plot_monthly_stats plot_monthly_stats2
TRUE TRUE
screen_flow_data write_flow_data
TRUE TRUE
write_full_analysis write_objects_list
TRUE TRUE
write_plots write_results
TRUE TRUE Examples
There are 67 help pages with examples, from 68 (98.53 %).
NEWS
The package has NEWS file and it is current.
License
The package uses .
Installation environment
System Info
| Field | Value |
|---|---|
| Image | rhub/ref-image |
| OS | Ubuntu 24.04.1 LTS |
| Platform | x86_64-pc-linux-gnu |
| System | x86_64, linux-gnu |
| Execution Time | 2025-02-19 05:13:58 UTC |
System information. Table about the system used to check the package.
R Session Info
Information about the R environment and capabilities:
R version 4.4.2 (2024-10-31)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 24.04.1 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so; LAPACK version 3.12.0
locale:
[1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8
[4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8
[7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C
time zone: UTC
tzcode source: system (glibc)
attached base packages:
[1] tools stats graphics grDevices utils datasets methods
[8] base
loaded via a namespace (and not attached):
[1] riskreports_0.0.0.9003 compiler_4.4.2 fastmap_1.2.0
[4] cli_3.6.4 htmltools_0.5.8.1 yaml_2.3.10
[7] rmarkdown_2.29 knitr_1.49 jsonlite_1.8.9
[10] xfun_0.50 digest_0.6.37 rlang_1.1.5
[13] evaluate_1.0.3 Platform used:
OS.type file.sep dynlib.ext GUI endian pkgType path.sep
"unix" "/" ".so" "X11" "little" "source" ":"
r_arch
"" R’s capabilities:
jpeg png tiff tcltk X11 aqua
TRUE TRUE TRUE TRUE FALSE FALSE
http/ftp sockets libxml fifo cledit iconv
TRUE TRUE FALSE TRUE FALSE TRUE
NLS Rprof profmem cairo ICU long.double
TRUE TRUE TRUE TRUE TRUE TRUE
libcurl
TRUE External software:
zlib
"1.3"
bzlib
"1.0.8, 13-Jul-2019"
xz
"5.4.5"
libdeflate
"1.19"
PCRE
"10.42 2022-12-11"
ICU
"74.2"
TRE
"TRE 0.8.0 R_fixes (BSD)"
iconv
"glibc 2.39"
readline
"8.2"
BLAS
"/usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3" Graphics external software:
cairo cairoFT pango
"1.18.0" "" "1.52.1"
libpng jpeg libtiff
"1.6.43" "8.0" "LIBTIFF, Version 4.5.1" Numerical characteristics of the machine:
double.eps double.neg.eps double.xmin
2.220446e-16 1.110223e-16 2.225074e-308
double.xmax double.base double.digits
1.797693e+308 2.000000e+00 5.300000e+01
double.rounding double.guard double.ulp.digits
5.000000e+00 0.000000e+00 -5.200000e+01
double.neg.ulp.digits double.exponent double.min.exp
-5.300000e+01 1.100000e+01 -1.022000e+03
double.max.exp integer.max sizeof.long
1.024000e+03 2.147484e+09 8.000000e+00
sizeof.longlong sizeof.longdouble sizeof.pointer
8.000000e+00 1.600000e+01 8.000000e+00
sizeof.time_t longdouble.eps longdouble.neg.eps
8.000000e+00 1.084202e-19 5.421011e-20
longdouble.digits longdouble.rounding longdouble.guard
6.400000e+01 5.000000e+00 0.000000e+00
longdouble.ulp.digits longdouble.neg.ulp.digits longdouble.exponent
-6.300000e+01 -6.400000e+01 1.500000e+01
longdouble.min.exp longdouble.max.exp
-1.638200e+04 1.638400e+04 Random number generation process:
[1] "Mersenne-Twister" "Inversion" "Rejection" Information about the environment
Environmental and options variables affect how package checks and software in it might behave. Here is the environmental variables when running this report
_R_CHECK_SYSTEM_CLOCK_
FALSE
ACCEPT_EULA Y
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GITHUB_STEP_SUMMARY /home/runner/work/_temp/_runner_file_commands/step_summary_c412a26f-cd8a-499e-b689-b0767882aa5e
GITHUB_TRIGGERING_ACTOR
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GITHUB_WORKFLOW Update package repositories
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GOROOT_1_23_X64 /opt/hostedtoolcache/go/1.23.6/x64
GRADLE_HOME /usr/share/gradle-8.12.1
HOME /home/runner
HOMEBREW_CLEANUP_PERIODIC_FULL_DAYS
3650
HOMEBREW_NO_AUTO_UPDATE
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ImageOS ubuntu24
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INVOCATION_ID 8bd4b7db4d15432e8df0477a564753c1
JAVA_HOME /usr/lib/jvm/temurin-17-jdk-amd64
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JOURNAL_STREAM 8:7410
LANG C.UTF-8
LD_LIBRARY_PATH /opt/R/4.4.2/lib/R/lib:/usr/local/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/temurin-17-jdk-amd64/lib/server:/opt/R/4.4.2/lib/R/lib:/usr/local/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/temurin-17-jdk-amd64/lib/server
LN_S ln -s
LOGGER_LOG_LEVEL DEBUG
MAKE make
MEMORY_PRESSURE_WATCH /sys/fs/cgroup/system.slice/runner-provisioner.service/memory.pressure
MEMORY_PRESSURE_WRITE c29tZSAyMDAwMDAgMjAwMDAwMAA=
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NVM_DIR /home/runner/.nvm
PAGER /usr/bin/pager
PATH /snap/bin:/home/runner/.local/bin:/opt/pipx_bin:/home/runner/.cargo/bin:/home/runner/.config/composer/vendor/bin:/usr/local/.ghcup/bin:/home/runner/.dotnet/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
PERFLOG_LOCATION_SETTING
RUNNER_PERFLOG
PHARMAPKGS_EXCLUDED_METRICS
assess_covr_coverage,assess_r_cmd_check
PHARMAPKGS_LIMIT 1000
PHARMAPKGS_PLATFORM ubuntu-22.04
PHARMAPKGS_R_VERSION 4.4
PHARMAPKGS_REMOTE_REPO
https://cloud.r-project.org/
PIPX_BIN_DIR /opt/pipx_bin
PIPX_HOME /opt/pipx
PKGCACHE_HTTP_VERSION 2
PKGLOAD_PARENT_TEMPDIR
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POWERSHELL_DISTRIBUTION_CHANNEL
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PROCESSX_PS1d45259edb3a_1739942031
YES
PWD /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_BIN_PATH /opt/quarto/bin
QUARTO_DENO /opt/quarto/bin/tools/x86_64/deno
QUARTO_DOCUMENT_PATH /home/runner/work/pharmapkgs/pharmapkgs/inst/report
QUARTO_PROFILE
QUARTO_PROJECT_DIR /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_PROJECT_ROOT /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_ROOT /
QUARTO_SHARE_PATH /opt/quarto/share
R_ARCH
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R_DOC_DIR /opt/R/4.4.2/lib/R/doc
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R_PLATFORM x86_64-pc-linux-gnu
R_PRINTCMD /usr/bin/lpr
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R_SHARE_DIR /opt/R/4.4.2/lib/R/share
R_STRIP_SHARED_LIB strip --strip-unneeded
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R_UNZIPCMD /usr/bin/unzip
R_ZIPCMD /usr/bin/zip
RUNNER_ARCH X64
RUNNER_ENVIRONMENT github-hosted
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SED /usr/bin/sed
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SGX_AESM_ADDR 1
SHLVL 1
STATS_D true
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STATS_D_TC true
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SWIFT_PATH /usr/share/swift/usr/bin
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TAR /usr/bin/tar
TZ UTC
USER runner
VCPKG_INSTALLATION_ROOT
/usr/local/share/vcpkg
XDG_CONFIG_HOME /home/runner/.config
XDG_RUNTIME_DIR /run/user/1001These are the options set to generate the report:
$add.smooth
[1] TRUE
$bitmapType
[1] "cairo"
$browser
[1] "xdg-open"
$browserNLdisabled
[1] FALSE
$callr.condition_handler_cli_message
function (msg)
{
custom_handler <- getOption("cli.default_handler")
if (is.function(custom_handler)) {
custom_handler(msg)
}
else {
cli_server_default(msg)
}
}
<bytecode: 0x56287a45f910>
<environment: namespace:cli>
$catch.script.errors
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$continue
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$contrasts
unordered ordered
"contr.treatment" "contr.poly"
$covr.record_tests
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$demo.ask
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{
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}
<bytecode: 0x56287984e9a0>
<environment: namespace:knitr>
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$matprod
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$prompt
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$repos
CRAN
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$rl_word_breaks
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$rlang_trace_top_env
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$scipen
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$show.coef.Pvalues
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$show.error.messages
[1] TRUE
$show.signif.stars
[1] TRUE
$showErrorCalls
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$showNCalls
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$str
$str$strict.width
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$str$digits.d
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$str$vec.len
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$str$list.len
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$str$deparse.lines
NULL
$str$drop.deparse.attr
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$str$formatNum
function (x, ...)
format(x, trim = TRUE, drop0trailing = TRUE, ...)
<environment: 0x562879937520>
$str.dendrogram.last
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$texi2dvi
[1] "/usr/bin/texi2dvi"
$tikzMetricsDictionary
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$timeout
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$try.outFile
A connection with
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class "file"
mode "w+b"
text "binary"
opened "opened"
can read "yes"
can write "yes"
$ts.eps
[1] 1e-05
$ts.S.compat
[1] FALSE
$unzip
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$useFancyQuotes
[1] FALSE
$verbose
[1] FALSE
$warn
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$warning.length
[1] 1000
$warnPartialMatchArgs
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$warnPartialMatchAttr
[1] FALSE
$warnPartialMatchDollar
[1] FALSE
$width
[1] 80