Validation Report - evoper@0.5.0
Context
This report is fully automated and builds on rhub/ref-image image. Documents the installation of this package on an open source R environment, focusing on:
- Installation environment description
- Testing coverage
It is limited to assess whether unit tests and documentation are present and can execute without error. An assessment would be required that the tests and documentation are meaningful.
Package evoper
Metric based risk assessment
The following metrics are derived from the riskmetric R package.
| has_news | 0 |
| exported_namespace | 139 |
| has_vignettes | 0 |
| export_help | 139 |
| has_website | TRUE |
| has_maintainer | Antonio Prestes Garcia antonio.pgarcia@alumnos.upm.es |
| bugs_status | subscript out of bounds |
| has_source_control | https://github.com/antonio-pgarcia/evoper |
| has_bug_reports_url | 1 |
| downloads_1yr | 3023 |
| reverse_dependencies | 0 |
| has_examples | 0.9142857 |
| dependencies | 12 |
| license | MIT + file LICENSE |
Package general assessment: Coverage, check results, size, download the last year, reverse dependencies and number of dependencies.
Dependencies
Overall the package has these dependencies:
| package | type | |
|---|---|---|
| 1 | rrepast | Depends |
| 2 | methods | Imports |
| 3 | futile.logger | Imports |
| 4 | boot | Imports |
| 5 | reshape | Imports |
| 6 | ggplot2 | Imports |
| 7 | deSolve | Imports |
| 8 | plot3D | Imports |
| 9 | plyr | Imports |
| 10 | data.table | Imports |
| 11 | utils | Imports |
| 12 | RNetLogo | Imports |
Package dependencies
Reverse dependencies
Overall the package has 0 reverse dependencies:
Namespace
Overall the package has 139 exported objects. 139 are documented:
abm.acor abm.ees1 abm.ees2
TRUE TRUE TRUE
abm.pso abm.saa abm.tabu
TRUE TRUE TRUE
acor.archive acor.F acor.lthgaussian
TRUE TRUE TRUE
acor.N acor.probabilities acor.S
TRUE TRUE TRUE
acor.sigma acor.updateants acor.W
TRUE TRUE TRUE
acor.weigth assert bestFitness
TRUE TRUE TRUE
bestSolution cbuf compare.algorithms1
TRUE TRUE TRUE
contourplothelper ees1.challenge ees1.explore
TRUE TRUE TRUE
ees1.mating ees1.mating1 ees1.mutation
TRUE TRUE TRUE
ees1.recombination ees1.selection elog.debug
TRUE TRUE TRUE
elog.error elog.info elog.level
TRUE TRUE TRUE
enforceBounds es.evaluate Estimates
TRUE TRUE TRUE
extremize f0.ackley f0.ackley4
TRUE TRUE TRUE
f0.adtn.rosenbrock2 f0.bohachevsky f0.bohachevsky4
TRUE TRUE TRUE
f0.cigar f0.cigar4 f0.griewank
TRUE TRUE TRUE
f0.griewank4 f0.nlnn.rosenbrock2 f0.periodtuningpp
TRUE TRUE TRUE
f0.periodtuningpp12 f0.periodtuningpp24 f0.periodtuningpp48
TRUE TRUE TRUE
f0.periodtuningpp72 f0.rosenbrock2 f0.rosenbrock4
TRUE TRUE TRUE
f0.rosenbrockn f0.schaffer f0.schaffer4
TRUE TRUE TRUE
f0.schwefel f0.schwefel4 f0.test
TRUE TRUE TRUE
f1.ackley f1.adtn.rosenbrock2 f1.bohachevsky
TRUE TRUE TRUE
f1.cigar f1.griewank f1.nlnn.rosenbrock2
TRUE TRUE TRUE
f1.rosenbrock2 f1.rosenbrockn f1.schaffer
TRUE TRUE TRUE
f1.schwefel f1.test fixdfcolumns
TRUE TRUE TRUE
generateSolution getFitness getSolution
TRUE TRUE TRUE
gm.mean gm.sd histplothelper
TRUE TRUE TRUE
initSolution lowerBound Magnitude
TRUE TRUE TRUE
naiveperiod NetLogoFunction NLWrapper.FindJar
TRUE TRUE TRUE
NLWrapper.GetParameter NLWrapper.Model NLWrapper.Run
TRUE TRUE TRUE
NLWrapper.RunExperiment NLWrapper.SetParameter NLWrapper.SetRandomSeed
TRUE TRUE TRUE
NLWrapper.Shutdown ObjectiveFunction Options
TRUE TRUE TRUE
OptionsACOR OptionsEES1 OptionsEES2
TRUE TRUE TRUE
OptionsFactory OptionsPSO OptionsSAA
TRUE TRUE TRUE
OptionsTS paramconverter partSolutionSpace
TRUE TRUE TRUE
PlainFunction pop.first pop.last
TRUE TRUE TRUE
predatorprey predatorprey.plot0 predatorprey.plot1
TRUE TRUE TRUE
pso.best pso.chi pso.lbest
TRUE TRUE TRUE
pso.neighborhood.K2 pso.neighborhood.K4 pso.neighborhood.KN
TRUE TRUE TRUE
pso.Velocity push random.wheel
TRUE TRUE TRUE
RepastFunction saa.bolt saa.neighborhood
TRUE TRUE TRUE
saa.neighborhood1 saa.neighborhoodH saa.neighborhoodN
TRUE TRUE TRUE
saa.tbyk saa.tcte saa.texp
TRUE TRUE TRUE
scatterplotlothelper searchrow show.comp1
TRUE TRUE TRUE
slope slopes sortSolution
TRUE TRUE TRUE
summarize.comp1 tabu.getNeighbors tabu.istabu
TRUE TRUE TRUE
upperBound xmeanci1 xmeanci2
TRUE TRUE TRUE
xyplothelper
TRUE Examples
There are 128 help pages with examples, from 140 (91.43 %).
NEWS
The package has NEWS file and it is current.
License
The package uses .
Installation environment
System Info
| Field | Value |
|---|---|
| Image | rhub/ref-image |
| OS | Ubuntu 24.04.1 LTS |
| Platform | x86_64-pc-linux-gnu |
| System | x86_64, linux-gnu |
| Execution Time | 2025-02-19 04:43:35 UTC |
System information. Table about the system used to check the package.
R Session Info
Information about the R environment and capabilities:
R version 4.4.2 (2024-10-31)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 24.04.1 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so; LAPACK version 3.12.0
locale:
[1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8
[4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8
[7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C
time zone: UTC
tzcode source: system (glibc)
attached base packages:
[1] tools stats graphics grDevices utils datasets methods
[8] base
loaded via a namespace (and not attached):
[1] riskreports_0.0.0.9003 compiler_4.4.2 fastmap_1.2.0
[4] cli_3.6.4 htmltools_0.5.8.1 yaml_2.3.10
[7] rmarkdown_2.29 knitr_1.49 jsonlite_1.8.9
[10] xfun_0.50 digest_0.6.37 rlang_1.1.5
[13] evaluate_1.0.3 Platform used:
OS.type file.sep dynlib.ext GUI endian pkgType path.sep
"unix" "/" ".so" "X11" "little" "source" ":"
r_arch
"" R’s capabilities:
jpeg png tiff tcltk X11 aqua
TRUE TRUE TRUE TRUE FALSE FALSE
http/ftp sockets libxml fifo cledit iconv
TRUE TRUE FALSE TRUE FALSE TRUE
NLS Rprof profmem cairo ICU long.double
TRUE TRUE TRUE TRUE TRUE TRUE
libcurl
TRUE External software:
zlib
"1.3"
bzlib
"1.0.8, 13-Jul-2019"
xz
"5.4.5"
libdeflate
"1.19"
PCRE
"10.42 2022-12-11"
ICU
"74.2"
TRE
"TRE 0.8.0 R_fixes (BSD)"
iconv
"glibc 2.39"
readline
"8.2"
BLAS
"/usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3" Graphics external software:
cairo cairoFT pango
"1.18.0" "" "1.52.1"
libpng jpeg libtiff
"1.6.43" "8.0" "LIBTIFF, Version 4.5.1" Numerical characteristics of the machine:
double.eps double.neg.eps double.xmin
2.220446e-16 1.110223e-16 2.225074e-308
double.xmax double.base double.digits
1.797693e+308 2.000000e+00 5.300000e+01
double.rounding double.guard double.ulp.digits
5.000000e+00 0.000000e+00 -5.200000e+01
double.neg.ulp.digits double.exponent double.min.exp
-5.300000e+01 1.100000e+01 -1.022000e+03
double.max.exp integer.max sizeof.long
1.024000e+03 2.147484e+09 8.000000e+00
sizeof.longlong sizeof.longdouble sizeof.pointer
8.000000e+00 1.600000e+01 8.000000e+00
sizeof.time_t longdouble.eps longdouble.neg.eps
8.000000e+00 1.084202e-19 5.421011e-20
longdouble.digits longdouble.rounding longdouble.guard
6.400000e+01 5.000000e+00 0.000000e+00
longdouble.ulp.digits longdouble.neg.ulp.digits longdouble.exponent
-6.300000e+01 -6.400000e+01 1.500000e+01
longdouble.min.exp longdouble.max.exp
-1.638200e+04 1.638400e+04 Random number generation process:
[1] "Mersenne-Twister" "Inversion" "Rejection" Information about the environment
Environmental and options variables affect how package checks and software in it might behave. Here is the environmental variables when running this report
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LOGGER_LOG_LEVEL DEBUG
MAKE make
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PERFLOG_LOCATION_SETTING
RUNNER_PERFLOG
PHARMAPKGS_EXCLUDED_METRICS
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PHARMAPKGS_LIMIT 1000
PHARMAPKGS_PLATFORM ubuntu-22.04
PHARMAPKGS_R_VERSION 4.4
PHARMAPKGS_REMOTE_REPO
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PKGCACHE_HTTP_VERSION 2
PKGLOAD_PARENT_TEMPDIR
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POWERSHELL_DISTRIBUTION_CHANNEL
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YES
PWD /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_BIN_PATH /opt/quarto/bin
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QUARTO_PROFILE
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TZ UTC
USER runner
VCPKG_INSTALLATION_ROOT
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XDG_CONFIG_HOME /home/runner/.config
XDG_RUNTIME_DIR /run/user/1001These are the options set to generate the report:
$add.smooth
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$bitmapType
[1] "cairo"
$browser
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$browserNLdisabled
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$callr.condition_handler_cli_message
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<bytecode: 0x55f393d2c910>
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$rlang_trace_top_env
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$str$formatNum
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$try.outFile
A connection with
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mode "w+b"
text "binary"
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can read "yes"
can write "yes"
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$width
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