Validation Report - evmix@2.12
Context
This report is fully automated and builds on rhub/ref-image image. Documents the installation of this package on an open source R environment, focusing on:
- Installation environment description
- Testing coverage
It is limited to assess whether unit tests and documentation are present and can execute without error. An assessment would be required that the tests and documentation are meaningful.
Package evmix
Metric based risk assessment
The following metrics are derived from the riskmetric R package.
| has_news | 0 |
| exported_namespace | 366 |
| has_vignettes | 4 |
| export_help | 366 |
| has_website | TRUE |
| has_maintainer | Carl Scarrott carl.scarrott@canterbury.ac.nz |
| bugs_status | package DESCRIPTION does not have a BugReports field |
| has_bug_reports_url | 0 |
| downloads_1yr | 16178 |
| reverse_dependencies | 6 |
| has_examples | 1 |
| dependencies | 7 |
| license | GPL-3 |
Package general assessment: Coverage, check results, size, download the last year, reverse dependencies and number of dependencies.
Dependencies
Overall the package has these dependencies:
| package | type | |
|---|---|---|
| 1 | stats | Depends |
| 2 | graphics | Depends |
| 3 | MASS | Depends |
| 4 | splines | Depends |
| 5 | gsl | Depends |
| 6 | SparseM | Depends |
| 7 | grDevices | Depends |
Package dependencies
Reverse dependencies
Overall the package has 6 reverse dependencies:
DiSCos, GRIDCOPULA, powerTCR, reservr, scRepertoire, zcurve
Namespace
Overall the package has 366 exported objects. 366 are documented:
bckdenxbeta1 bckdenxbeta2 bckdenxcopula
TRUE TRUE TRUE
bckdenxcutnorm bckdenxgamma1 bckdenxgamma2
TRUE TRUE TRUE
bckdenxreflect bckdenxrenorm bckdenxsimple
TRUE TRUE TRUE
check.bcmethod check.control check.design.knots
TRUE TRUE TRUE
check.inputn check.kbw check.kernel
TRUE TRUE TRUE
check.kinputs check.logic check.n
TRUE TRUE TRUE
check.nn check.nparam check.offset
TRUE TRUE TRUE
check.optim check.param check.phiu
TRUE TRUE TRUE
check.posparam check.prob check.quant
TRUE TRUE TRUE
check.text cvpsden dbckden
TRUE TRUE TRUE
dbckdengpd dbckdengpdcon dbetagpd
TRUE TRUE TRUE
dbetagpdcon ddwm densplot
TRUE TRUE TRUE
dgammagpd dgammagpdcon dgkg
TRUE TRUE TRUE
dgkgcon dgng dgngcon
TRUE TRUE TRUE
dgpd dhpd dhpdcon
TRUE TRUE TRUE
ditmgng ditmnormgpd ditmweibullgpd
TRUE TRUE TRUE
dkden dkdengpd dkdengpdcon
TRUE TRUE TRUE
dlognormgpd dlognormgpdcon dmgamma
TRUE TRUE TRUE
dmgammagpd dmgammagpdcon dnormgpd
TRUE TRUE TRUE
dnormgpdcon dpsden dpsdengpd
TRUE TRUE TRUE
dweibullgpd dweibullgpdcon evmix.diag
TRUE TRUE TRUE
fbckden fbckdengpd fbckdengpdcon
TRUE TRUE TRUE
fbetagpd fbetagpdcon fdwm
TRUE TRUE TRUE
fgammagpd fgammagpdcon fgkg
TRUE TRUE TRUE
fgkgcon fgng fgngcon
TRUE TRUE TRUE
fgpd fhpd fhpdcon
TRUE TRUE TRUE
fitmgng fitmnormgpd fitmweibullgpd
TRUE TRUE TRUE
fkden fkdengpd fkdengpdcon
TRUE TRUE TRUE
flognormgpd flognormgpdcon fmgamma
TRUE TRUE TRUE
fmgammagpd fmgammagpdcon fnormgpd
TRUE TRUE TRUE
fnormgpdcon fpsden fpsdengpd
TRUE TRUE TRUE
fweibullgpd fweibullgpdcon hillplot
TRUE TRUE TRUE
iwlspsden ka0 ka1
TRUE TRUE TRUE
ka2 kbw kdbiweight
TRUE TRUE TRUE
kdcosine kdenx kdepanechnikov
TRUE TRUE TRUE
kdgaussian kdoptcosine kdparzen
TRUE TRUE TRUE
kdtriangular kdtricube kdtriweight
TRUE TRUE TRUE
kduniform kdz klambda
TRUE TRUE TRUE
kpbiweight kpcosine kpepanechnikov
TRUE TRUE TRUE
kpgaussian kpoptcosine kpparzen
TRUE TRUE TRUE
kptriangular kptricube kptriweight
TRUE TRUE TRUE
kpuniform kpz lbckden
TRUE TRUE TRUE
lbckdengpd lbckdengpdcon lbetagpd
TRUE TRUE TRUE
lbetagpdcon ldwm lgammagpd
TRUE TRUE TRUE
lgammagpdcon lgkg lgkgcon
TRUE TRUE TRUE
lgng lgngcon lgpd
TRUE TRUE TRUE
lhpd lhpdcon litmgng
TRUE TRUE TRUE
litmnormgpd litmweibullgpd lkden
TRUE TRUE TRUE
lkdengpd lkdengpdcon llognormgpd
TRUE TRUE TRUE
llognormgpdcon lmgamma lmgammagpd
TRUE TRUE TRUE
lmgammagpdcon lnormgpd lnormgpdcon
TRUE TRUE TRUE
lpsden lpsdengpd lweibullgpd
TRUE TRUE TRUE
lweibullgpdcon mrlplot nlbckden
TRUE TRUE TRUE
nlbckdengpd nlbckdengpdcon nlbetagpd
TRUE TRUE TRUE
nlbetagpdcon nldwm nlEMmgamma
TRUE TRUE TRUE
nlEMmgammagpd nlEMmgammagpdcon nleuitmgng
TRUE TRUE TRUE
nleuitmnormgpd nleuitmweibullgpd nlgammagpd
TRUE TRUE TRUE
nlgammagpdcon nlgkg nlgkgcon
TRUE TRUE TRUE
nlgng nlgngcon nlgpd
TRUE TRUE TRUE
nlhpd nlhpdcon nlitmgng
TRUE TRUE TRUE
nlitmnormgpd nlitmweibullgpd nlkden
TRUE TRUE TRUE
nlkdengpd nlkdengpdcon nllognormgpd
TRUE TRUE TRUE
nllognormgpdcon nlmgamma nlmgammagpd
TRUE TRUE TRUE
nlmgammagpdcon nlnormgpd nlnormgpdcon
TRUE TRUE TRUE
nlpsden nlpsdengpd nlubckdengpd
TRUE TRUE TRUE
nlubckdengpdcon nlubetagpd nlubetagpdcon
TRUE TRUE TRUE
nluEMmgammagpd nluEMmgammagpdcon nlugammagpd
TRUE TRUE TRUE
nlugammagpdcon nlugkg nlugkgcon
TRUE TRUE TRUE
nlugng nlugngcon nluhpdcon
TRUE TRUE TRUE
nlukdengpd nlukdengpdcon nlulognormgpd
TRUE TRUE TRUE
nlulognormgpdcon nlumgammagpd nlumgammagpdcon
TRUE TRUE TRUE
nlunormgpd nlunormgpdcon nlupsdengpd
TRUE TRUE TRUE
nluweibullgpd nluweibullgpdcon nlweibullgpd
TRUE TRUE TRUE
nlweibullgpdcon pbckden pbckdengpd
TRUE TRUE TRUE
pbckdengpdcon pbckdenxbeta1 pbckdenxbeta2
TRUE TRUE TRUE
pbckdenxcopula pbckdenxcutnorm pbckdenxgamma1
TRUE TRUE TRUE
pbckdenxgamma2 pbckdenxlog pbckdenxnn
TRUE TRUE TRUE
pbckdenxreflect pbckdenxrenorm pbckdenxsimple
TRUE TRUE TRUE
pbetagpd pbetagpdcon pdwm
TRUE TRUE TRUE
pgammagpd pgammagpdcon pgkg
TRUE TRUE TRUE
pgkgcon pgng pgngcon
TRUE TRUE TRUE
pgpd phpd phpdcon
TRUE TRUE TRUE
pickandsplot pitmgng pitmnormgpd
TRUE TRUE TRUE
pitmweibullgpd pkden pkdengpd
TRUE TRUE TRUE
pkdengpdcon pkdenx plognormgpd
TRUE TRUE TRUE
plognormgpdcon pmgamma pmgammagpd
TRUE TRUE TRUE
pmgammagpdcon pnormgpd pnormgpdcon
TRUE TRUE TRUE
pplot ppsden ppsdengpd
TRUE TRUE TRUE
profleuitmgng profleuitmnormgpd profleuitmweibullgpd
TRUE TRUE TRUE
proflubckdengpd proflubckdengpdcon proflubetagpd
TRUE TRUE TRUE
proflubetagpdcon proflugammagpd proflugammagpdcon
TRUE TRUE TRUE
proflugkg proflugkgcon proflugng
TRUE TRUE TRUE
proflugngcon profluhpdcon proflukdengpd
TRUE TRUE TRUE
proflukdengpdcon proflulognormgpd proflulognormgpdcon
TRUE TRUE TRUE
proflumgammagpd proflumgammagpdcon proflunormgpd
TRUE TRUE TRUE
proflunormgpdcon proflupsdengpd profluweibullgpd
TRUE TRUE TRUE
profluweibullgpdcon pscounts pweibullgpd
TRUE TRUE TRUE
pweibullgpdcon pxb qbckden
TRUE TRUE TRUE
qbckdengpd qbckdengpdcon qbetagpd
TRUE TRUE TRUE
qbetagpdcon qdwm qgammagpd
TRUE TRUE TRUE
qgammagpdcon qgbgmix qgbgmixprime
TRUE TRUE TRUE
qgkg qgkgcon qgng
TRUE TRUE TRUE
qgngcon qgpd qhpd
TRUE TRUE TRUE
qhpdcon qitmgng qitmnormgpd
TRUE TRUE TRUE
qitmweibullgpd qkden qkdengpd
TRUE TRUE TRUE
qkdengpdcon qlognormgpd qlognormgpdcon
TRUE TRUE TRUE
qmgamma qmgammagpd qmgammagpdcon
TRUE TRUE TRUE
qmix qmixprime qnormgpd
TRUE TRUE TRUE
qnormgpdcon qplot qpsden
TRUE TRUE TRUE
qpsdengpd qweibullgpd qweibullgpdcon
TRUE TRUE TRUE
rbckden rbckdengpd rbckdengpdcon
TRUE TRUE TRUE
rbetagpd rbetagpdcon rdwm
TRUE TRUE TRUE
rgammagpd rgammagpdcon rgkg
TRUE TRUE TRUE
rgkgcon rgng rgngcon
TRUE TRUE TRUE
rgpd rhpd rhpdcon
TRUE TRUE TRUE
ritmgng ritmnormgpd ritmweibullgpd
TRUE TRUE TRUE
rkden rkdengpd rkdengpdcon
TRUE TRUE TRUE
rlognormgpd rlognormgpdcon rlplot
TRUE TRUE TRUE
rmgamma rmgammagpd rmgammagpdcon
TRUE TRUE TRUE
rnormgpd rnormgpdcon rpsden
TRUE TRUE TRUE
rpsdengpd rweibullgpd rweibullgpdcon
TRUE TRUE TRUE
tcplot tscaleplot tshapeplot
TRUE TRUE TRUE Examples
There are 73 help pages with examples, from 73 (100.00 %).
NEWS
The package has NEWS file and it is current.
License
The package uses .
Installation environment
System Info
| Field | Value |
|---|---|
| Image | rhub/ref-image |
| OS | Ubuntu 24.04.1 LTS |
| Platform | x86_64-pc-linux-gnu |
| System | x86_64, linux-gnu |
| Execution Time | 2025-02-19 04:42:32 UTC |
System information. Table about the system used to check the package.
R Session Info
Information about the R environment and capabilities:
R version 4.4.2 (2024-10-31)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 24.04.1 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so; LAPACK version 3.12.0
locale:
[1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8
[4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8
[7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C
time zone: UTC
tzcode source: system (glibc)
attached base packages:
[1] tools stats graphics grDevices utils datasets methods
[8] base
loaded via a namespace (and not attached):
[1] riskreports_0.0.0.9003 compiler_4.4.2 fastmap_1.2.0
[4] cli_3.6.4 htmltools_0.5.8.1 yaml_2.3.10
[7] rmarkdown_2.29 knitr_1.49 jsonlite_1.8.9
[10] xfun_0.50 digest_0.6.37 rlang_1.1.5
[13] evaluate_1.0.3 Platform used:
OS.type file.sep dynlib.ext GUI endian pkgType path.sep
"unix" "/" ".so" "X11" "little" "source" ":"
r_arch
"" R’s capabilities:
jpeg png tiff tcltk X11 aqua
TRUE TRUE TRUE TRUE FALSE FALSE
http/ftp sockets libxml fifo cledit iconv
TRUE TRUE FALSE TRUE FALSE TRUE
NLS Rprof profmem cairo ICU long.double
TRUE TRUE TRUE TRUE TRUE TRUE
libcurl
TRUE External software:
zlib
"1.3"
bzlib
"1.0.8, 13-Jul-2019"
xz
"5.4.5"
libdeflate
"1.19"
PCRE
"10.42 2022-12-11"
ICU
"74.2"
TRE
"TRE 0.8.0 R_fixes (BSD)"
iconv
"glibc 2.39"
readline
"8.2"
BLAS
"/usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3" Graphics external software:
cairo cairoFT pango
"1.18.0" "" "1.52.1"
libpng jpeg libtiff
"1.6.43" "8.0" "LIBTIFF, Version 4.5.1" Numerical characteristics of the machine:
double.eps double.neg.eps double.xmin
2.220446e-16 1.110223e-16 2.225074e-308
double.xmax double.base double.digits
1.797693e+308 2.000000e+00 5.300000e+01
double.rounding double.guard double.ulp.digits
5.000000e+00 0.000000e+00 -5.200000e+01
double.neg.ulp.digits double.exponent double.min.exp
-5.300000e+01 1.100000e+01 -1.022000e+03
double.max.exp integer.max sizeof.long
1.024000e+03 2.147484e+09 8.000000e+00
sizeof.longlong sizeof.longdouble sizeof.pointer
8.000000e+00 1.600000e+01 8.000000e+00
sizeof.time_t longdouble.eps longdouble.neg.eps
8.000000e+00 1.084202e-19 5.421011e-20
longdouble.digits longdouble.rounding longdouble.guard
6.400000e+01 5.000000e+00 0.000000e+00
longdouble.ulp.digits longdouble.neg.ulp.digits longdouble.exponent
-6.300000e+01 -6.400000e+01 1.500000e+01
longdouble.min.exp longdouble.max.exp
-1.638200e+04 1.638400e+04 Random number generation process:
[1] "Mersenne-Twister" "Inversion" "Rejection" Information about the environment
Environmental and options variables affect how package checks and software in it might behave. Here is the environmental variables when running this report
_R_CHECK_SYSTEM_CLOCK_
FALSE
ACCEPT_EULA Y
ACTIONS_RUNNER_ACTION_ARCHIVE_CACHE
/opt/actionarchivecache
AGENT_TOOLSDIRECTORY /opt/hostedtoolcache
ANDROID_HOME /usr/local/lib/android/sdk
ANDROID_NDK /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_HOME /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_LATEST_HOME
/usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_ROOT /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_SDK_ROOT /usr/local/lib/android/sdk
ANT_HOME /usr/share/ant
AZURE_EXTENSION_DIR /opt/az/azcliextensions
BOOTSTRAP_HASKELL_NONINTERACTIVE
1
BUNDLE_EXT linux-amd64.deb
CHROME_BIN /usr/bin/google-chrome
CHROMEWEBDRIVER /usr/local/share/chromedriver-linux64
CI true
CONDA /usr/share/miniconda
DEBIAN_FRONTEND noninteractive
DENO_DOM_PLUGIN /opt/quarto/bin/tools/x86_64/deno_dom/libplugin.so
DENO_NO_UPDATE_CHECK 1
DENO_TLS_CA_STORE system,mozilla
DEPLOYMENT_BASEPATH /opt/runner
DOTNET_MULTILEVEL_LOOKUP
0
DOTNET_NOLOGO 1
DOTNET_SKIP_FIRST_TIME_EXPERIENCE
1
EDGEWEBDRIVER /usr/local/share/edge_driver
EDITOR vi
GECKOWEBDRIVER /usr/local/share/gecko_driver
GHCUP_INSTALL_BASE_PREFIX
/usr/local
GITHUB_ACTION __run
GITHUB_ACTION_REF
GITHUB_ACTION_REPOSITORY
GITHUB_ACTIONS true
GITHUB_ACTOR llrs-roche
GITHUB_ACTOR_ID 185338939
GITHUB_API_URL https://api.github.com
GITHUB_BASE_REF
GITHUB_ENV /home/runner/work/_temp/_runner_file_commands/set_env_c412a26f-cd8a-499e-b689-b0767882aa5e
GITHUB_EVENT_NAME schedule
GITHUB_EVENT_PATH /home/runner/work/_temp/_github_workflow/event.json
GITHUB_GRAPHQL_URL https://api.github.com/graphql
GITHUB_HEAD_REF
GITHUB_JOB main
GITHUB_OUTPUT /home/runner/work/_temp/_runner_file_commands/set_output_c412a26f-cd8a-499e-b689-b0767882aa5e
GITHUB_PATH /home/runner/work/_temp/_runner_file_commands/add_path_c412a26f-cd8a-499e-b689-b0767882aa5e
GITHUB_REF refs/heads/main
GITHUB_REF_NAME main
GITHUB_REF_PROTECTED false
GITHUB_REF_TYPE branch
GITHUB_REPOSITORY pharmaR/pharmapkgs
GITHUB_REPOSITORY_ID 798326913
GITHUB_REPOSITORY_OWNER
pharmaR
GITHUB_REPOSITORY_OWNER_ID
42115094
GITHUB_RETENTION_DAYS 90
GITHUB_RUN_ATTEMPT 1
GITHUB_RUN_ID 13404668958
GITHUB_RUN_NUMBER 96
GITHUB_SERVER_URL https://github.com
GITHUB_SHA a8b95a62e6dc098bb3af41043304208245a9ed4a
GITHUB_STATE /home/runner/work/_temp/_runner_file_commands/save_state_c412a26f-cd8a-499e-b689-b0767882aa5e
GITHUB_STEP_SUMMARY /home/runner/work/_temp/_runner_file_commands/step_summary_c412a26f-cd8a-499e-b689-b0767882aa5e
GITHUB_TRIGGERING_ACTOR
llrs-roche
GITHUB_WORKFLOW Update package repositories
GITHUB_WORKFLOW_REF pharmaR/pharmapkgs/.github/workflows/update-repos.yml@refs/heads/main
GITHUB_WORKFLOW_SHA a8b95a62e6dc098bb3af41043304208245a9ed4a
GITHUB_WORKSPACE /home/runner/work/pharmapkgs/pharmapkgs
GOROOT_1_21_X64 /opt/hostedtoolcache/go/1.21.13/x64
GOROOT_1_22_X64 /opt/hostedtoolcache/go/1.22.12/x64
GOROOT_1_23_X64 /opt/hostedtoolcache/go/1.23.6/x64
GRADLE_HOME /usr/share/gradle-8.12.1
HOME /home/runner
HOMEBREW_CLEANUP_PERIODIC_FULL_DAYS
3650
HOMEBREW_NO_AUTO_UPDATE
1
ImageOS ubuntu24
ImageVersion 20250209.1.0
INVOCATION_ID 8bd4b7db4d15432e8df0477a564753c1
JAVA_HOME /usr/lib/jvm/temurin-17-jdk-amd64
JAVA_HOME_11_X64 /usr/lib/jvm/temurin-11-jdk-amd64
JAVA_HOME_17_X64 /usr/lib/jvm/temurin-17-jdk-amd64
JAVA_HOME_21_X64 /usr/lib/jvm/temurin-21-jdk-amd64
JAVA_HOME_8_X64 /usr/lib/jvm/temurin-8-jdk-amd64
JOURNAL_STREAM 8:7410
LANG C.UTF-8
LD_LIBRARY_PATH /opt/R/4.4.2/lib/R/lib:/usr/local/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/temurin-17-jdk-amd64/lib/server:/opt/R/4.4.2/lib/R/lib:/usr/local/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/temurin-17-jdk-amd64/lib/server
LN_S ln -s
LOGGER_LOG_LEVEL DEBUG
MAKE make
MEMORY_PRESSURE_WATCH /sys/fs/cgroup/system.slice/runner-provisioner.service/memory.pressure
MEMORY_PRESSURE_WRITE c29tZSAyMDAwMDAgMjAwMDAwMAA=
NOT_CRAN true
NVM_DIR /home/runner/.nvm
PAGER /usr/bin/pager
PATH /snap/bin:/home/runner/.local/bin:/opt/pipx_bin:/home/runner/.cargo/bin:/home/runner/.config/composer/vendor/bin:/usr/local/.ghcup/bin:/home/runner/.dotnet/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
PERFLOG_LOCATION_SETTING
RUNNER_PERFLOG
PHARMAPKGS_EXCLUDED_METRICS
assess_covr_coverage,assess_r_cmd_check
PHARMAPKGS_LIMIT 1000
PHARMAPKGS_PLATFORM ubuntu-22.04
PHARMAPKGS_R_VERSION 4.4
PHARMAPKGS_REMOTE_REPO
https://cloud.r-project.org/
PIPX_BIN_DIR /opt/pipx_bin
PIPX_HOME /opt/pipx
PKGCACHE_HTTP_VERSION 2
PKGLOAD_PARENT_TEMPDIR
/tmp/RtmpZYt03y
POWERSHELL_DISTRIBUTION_CHANNEL
GitHub-Actions-ubuntu24
PROCESSX_PS1d45917eefc_1739940145
YES
PWD /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_BIN_PATH /opt/quarto/bin
QUARTO_DENO /opt/quarto/bin/tools/x86_64/deno
QUARTO_DOCUMENT_PATH /home/runner/work/pharmapkgs/pharmapkgs/inst/report
QUARTO_PROFILE
QUARTO_PROJECT_DIR /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_PROJECT_ROOT /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_ROOT /
QUARTO_SHARE_PATH /opt/quarto/share
R_ARCH
R_BROWSER xdg-open
R_BZIPCMD /usr/bin/bzip2
R_DOC_DIR /opt/R/4.4.2/lib/R/doc
R_GZIPCMD /usr/bin/gzip
R_HOME /opt/R/4.4.2/lib/R
R_INCLUDE_DIR /opt/R/4.4.2/lib/R/include
R_LIB_FOR_PAK /opt/R/4.4.2/lib/R/site-library
R_LIBS_SITE /opt/R/4.4.2/lib/R/site-library
R_LIBS_USER /home/runner/work/_temp/Library
R_PAPERSIZE letter
R_PAPERSIZE_USER letter
R_PDFVIEWER /usr/bin/xdg-open
R_PLATFORM x86_64-pc-linux-gnu
R_PRINTCMD /usr/bin/lpr
R_RD4PDF times,inconsolata,hyper
R_SESSION_TMPDIR /tmp/RtmpSxwDAQ
R_SHARE_DIR /opt/R/4.4.2/lib/R/share
R_STRIP_SHARED_LIB strip --strip-unneeded
R_STRIP_STATIC_LIB strip --strip-debug
R_TEXI2DVICMD /usr/bin/texi2dvi
R_UNZIPCMD /usr/bin/unzip
R_ZIPCMD /usr/bin/zip
RUNNER_ARCH X64
RUNNER_ENVIRONMENT github-hosted
RUNNER_NAME GitHub Actions 2
RUNNER_OS Linux
RUNNER_PERFLOG /home/runner/perflog
RUNNER_TEMP /home/runner/work/_temp
RUNNER_TOOL_CACHE /opt/hostedtoolcache
RUNNER_TRACKING_ID github_40220c0a-4f03-4847-8b7e-3a374b87939a
RUNNER_USER runner
RUNNER_WORKSPACE /home/runner/work/pharmapkgs
SED /usr/bin/sed
SELENIUM_JAR_PATH /usr/share/java/selenium-server.jar
SGX_AESM_ADDR 1
SHLVL 1
STATS_D true
STATS_D_D true
STATS_D_TC true
STATS_EXT true
STATS_EXTP https://provjobdprod.z13.web.core.windows.net/settings/provjobdsettings-latest/provjobd.data
STATS_PIP false
STATS_RDCL true
STATS_TRP true
STATS_UE true
STATS_V3PS true
STATS_VMD true
STATS_VMFE true
SWIFT_PATH /usr/share/swift/usr/bin
SYSTEMD_EXEC_PID 837
TAR /usr/bin/tar
TZ UTC
USER runner
VCPKG_INSTALLATION_ROOT
/usr/local/share/vcpkg
XDG_CONFIG_HOME /home/runner/.config
XDG_RUNTIME_DIR /run/user/1001These are the options set to generate the report:
$add.smooth
[1] TRUE
$bitmapType
[1] "cairo"
$browser
[1] "xdg-open"
$browserNLdisabled
[1] FALSE
$callr.condition_handler_cli_message
function (msg)
{
custom_handler <- getOption("cli.default_handler")
if (is.function(custom_handler)) {
custom_handler(msg)
}
else {
cli_server_default(msg)
}
}
<bytecode: 0x55c6d130f910>
<environment: namespace:cli>
$catch.script.errors
[1] FALSE
$CBoundsCheck
[1] FALSE
$check.bounds
[1] FALSE
$citation.bibtex.max
[1] 1
$continue
[1] "+ "
$contrasts
unordered ordered
"contr.treatment" "contr.poly"
$covr.record_tests
[1] TRUE
$defaultPackages
[1] "datasets" "utils" "grDevices" "graphics" "stats" "methods"
$demo.ask
[1] "default"
$deparse.cutoff
[1] 60
$device
function (width = 7, height = 7, ...)
{
grDevices::pdf(NULL, width, height, ...)
}
<bytecode: 0x55c6d076b358>
<environment: namespace:knitr>
$device.ask.default
[1] FALSE
$digits
[1] 7
$dvipscmd
[1] "dvips"
$echo
[1] FALSE
$editor
[1] "vi"
$encoding
[1] "native.enc"
$example.ask
[1] "default"
$expressions
[1] 5000
$help.search.types
[1] "vignette" "demo" "help"
$help.try.all.packages
[1] FALSE
$htmltools.preserve.raw
[1] TRUE
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[1] "R/4.4.2 R (4.4.2 x86_64-pc-linux-gnu x86_64 linux-gnu) on GitHub Actions"
$internet.info
[1] 2
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[1] TRUE
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[1] FALSE
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[1] FALSE
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[1] FALSE
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[1] TRUE
$locatorBell
[1] TRUE
$mailer
[1] "mailto"
$matprod
[1] "default"
$max.contour.segments
[1] 25000
$max.print
[1] 99999
$menu.graphics
[1] TRUE
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[1] 1
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[1] 50
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[1] "."
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[1] "/opt/R/4.4.2/lib/R/bin/pager"
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[1] TRUE
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[1] "/usr/bin/xdg-open"
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[1] "/usr/bin/lpr"
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[1] "> "
$repos
CRAN
"https://cran.rstudio.com"
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$rlang_trace_top_env
<environment: R_GlobalEnv>
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[1] TRUE
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[1] TRUE
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[1] TRUE
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[1] TRUE
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[1] 50
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[1] FALSE
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$str$strict.width
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NULL
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function (x, ...)
format(x, trim = TRUE, drop0trailing = TRUE, ...)
<environment: 0x55c6d07e7520>
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A connection with
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class "file"
mode "w+b"
text "binary"
opened "opened"
can read "yes"
can write "yes"
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