Validation Report - ergm@4.8.1
Context
This report is fully automated and builds on rhub/ref-image image. Documents the installation of this package on an open source R environment, focusing on:
- Installation environment description
- Testing coverage
It is limited to assess whether unit tests and documentation are present and can execute without error. An assessment would be required that the tests and documentation are meaningful.
Package ergm
Metric based risk assessment
The following metrics are derived from the riskmetric R package.
| has_news | 0 |
| exported_namespace | 120 |
| has_vignettes | 13 |
| export_help | 120 |
| has_website | TRUE |
| has_maintainer | Pavel N. Krivitsky pavel@statnet.org |
| bugs_status | subscript out of bounds |
| has_bug_reports_url | 1 |
| downloads_1yr | 79704 |
| reverse_dependencies | 33 |
| has_examples | 0.8827586 |
| dependencies | 17 |
| license | GPL-3 + file LICENSE |
Package general assessment: Coverage, check results, size, download the last year, reverse dependencies and number of dependencies.
Dependencies
Overall the package has these dependencies:
| package | type | |
|---|---|---|
| 1 | network (>= 1.19.0) | Depends |
| 2 | robustbase (>= 0.99-4-1) | Imports |
| 3 | coda (>= 0.19-4.1) | Imports |
| 4 | trust (>= 0.1-8) | Imports |
| 5 | lpSolveAPI (>= 5.5.2.0-17.12) | Imports |
| 6 | statnet.common (>= 4.11.0) | Imports |
| 7 | rle (>= 0.9.2) | Imports |
| 8 | purrr (>= 1.0.2) | Imports |
| 9 | rlang (>= 1.1.4) | Imports |
| 10 | memoise (>= 2.0.1) | Imports |
| 11 | tibble (>= 3.2.1) | Imports |
| 12 | magrittr (>= 2.0.3) | Imports |
| 13 | Rdpack (>= 2.6.2) | Imports |
| 14 | knitr (>= 1.49) | Imports |
| 15 | stringr (>= 1.5.1) | Imports |
| 16 | parallel | Imports |
| 17 | methods | Imports |
Package dependencies
Reverse dependencies
Overall the package has 33 reverse dependencies:
Bergm, BFpack, bigergm, broom, btergm, dnr, EpiModel, ergm.count, ergm.ego, ergm.multi, ergm.rank, ergMargins, ergmgp, ergmito, fergm, ideanet, latentnet, lolog, mlergm, motifr, ndtv, nemBM, netmediate, NetMix, RDS, sand, statnet, statnetWeb, tergm, tergmLite, tsna, VBLPCM, xergm.common
Namespace
Overall the package has 120 exported objects. 118 are documented:
.simulate_formula.network %ergmlhs%
TRUE FALSE
%ergmlhs%<- approx.hotelling.diff.test
FALSE TRUE
as.ergm_model as.rlebdm
TRUE TRUE
call.ErgmTerm check.ErgmTerm
TRUE TRUE
COLLAPSE_SMALLEST control.ergm
TRUE TRUE
control.ergm.bridge control.ergm.godfather
TRUE TRUE
control.gof.ergm control.gof.formula
TRUE TRUE
control.logLik.ergm control.san
TRUE TRUE
control.simulate control.simulate.ergm
TRUE TRUE
control.simulate.formula control.simulate.formula.ergm
TRUE TRUE
convert_ergmlhs degreedist
TRUE TRUE
enformulate.curved ergm
TRUE TRUE
ergm_attr_levels ergm_bd_init
TRUE TRUE
ergm_Cstate_clear ergm_cutoff_message
TRUE TRUE
ergm_dyadgen_select ergm_edgecov_args
TRUE TRUE
ergm_get_vattr ERGM_GET_VATTR_MULTIPLE_TYPES
TRUE TRUE
ergm_GWDECAY ergm_Init_abort
TRUE TRUE
ergm_Init_inform ergm_Init_message
TRUE TRUE
ergm_Init_stop ergm_Init_try
TRUE TRUE
ergm_Init_warn ergm_Init_warning
TRUE TRUE
ergm_keyword ERGM_LEVELS_SPEC
TRUE TRUE
ergm_MCMC_sample ergm_MCMC_slave
TRUE TRUE
ergm_mk_std_op_namewrap ergm_model
TRUE TRUE
ergm_no_ext.encode ergm_plot.mcmc.list
TRUE TRUE
ergm_preprocess_response ergm_propagate_ext.encode
TRUE TRUE
ergm_proposal ergm_proposal_table
TRUE TRUE
ergm_SAN_slave ergm_state
TRUE TRUE
ERGM_STATE_C_CHANGED ergm_state_cache
TRUE TRUE
ERGM_STATE_R_CHANGED ergm_state_receive
TRUE TRUE
ERGM_STATE_RECONCILED ergm_state_send
TRUE TRUE
ergm_symmetrize ERGM_VATTR_SPEC
TRUE TRUE
ERGM_VATTR_SPEC_NULL ergm.allstats
TRUE TRUE
ergm.bridge.0.llk ergm.bridge.dindstart.llk
TRUE TRUE
ergm.bridge.llr ergm.design
TRUE TRUE
ergm.estfun ergm.eta
TRUE TRUE
ergm.etagrad ergm.etagradmult
TRUE TRUE
ergm.exact ergm.geodistdist
TRUE TRUE
ergm.geodistn ergm.getCluster
TRUE TRUE
ergm.getnetwork ergm.godfather
TRUE TRUE
ergm.pl ergm.restartCluster
TRUE TRUE
ergm.stopCluster ergmMPLE
TRUE TRUE
fix.curved get.MT_terms
TRUE TRUE
get.node.attr geweke.diag.mv
TRUE TRUE
gof is.curved
TRUE TRUE
is.dyad.independent is.ergm
TRUE TRUE
is.ergm_state is.valued
TRUE TRUE
LARGEST logLikNull
TRUE TRUE
mcmc.diagnostics network.list
TRUE TRUE
nparam nthreads
TRUE TRUE
nvattr.copy.network param_names
TRUE TRUE
param_names<- rank_test.ergm
TRUE TRUE
rlebdm san
TRUE TRUE
search.ergmConstraints search.ergmHints
TRUE TRUE
search.ergmProposals search.ergmReferences
TRUE TRUE
search.ergmTerms set.MT_terms
TRUE TRUE
shrink_into_CH simulate_formula
TRUE TRUE
SMALLEST snctrl
TRUE TRUE
spectrum0.mvar summary_formula
TRUE TRUE
to_ergm_Cdouble update_network
TRUE TRUE
wrap.ergm_model wtd.median
TRUE TRUE Examples
There are 256 help pages with examples, from 290 (88.28 %).
NEWS
The package has NEWS file and it is current.
License
The package uses .
Installation environment
System Info
| Field | Value |
|---|---|
| Image | rhub/ref-image |
| OS | Ubuntu 24.04.1 LTS |
| Platform | x86_64-pc-linux-gnu |
| System | x86_64, linux-gnu |
| Execution Time | 2025-02-19 04:25:45 UTC |
System information. Table about the system used to check the package.
R Session Info
Information about the R environment and capabilities:
R version 4.4.2 (2024-10-31)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 24.04.1 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so; LAPACK version 3.12.0
locale:
[1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8
[4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8
[7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C
time zone: UTC
tzcode source: system (glibc)
attached base packages:
[1] tools stats graphics grDevices utils datasets methods
[8] base
loaded via a namespace (and not attached):
[1] riskreports_0.0.0.9003 compiler_4.4.2 fastmap_1.2.0
[4] cli_3.6.4 htmltools_0.5.8.1 yaml_2.3.10
[7] rmarkdown_2.29 knitr_1.49 jsonlite_1.8.9
[10] xfun_0.50 digest_0.6.37 rlang_1.1.5
[13] evaluate_1.0.3 Platform used:
OS.type file.sep dynlib.ext GUI endian pkgType path.sep
"unix" "/" ".so" "X11" "little" "source" ":"
r_arch
"" R’s capabilities:
jpeg png tiff tcltk X11 aqua
TRUE TRUE TRUE TRUE FALSE FALSE
http/ftp sockets libxml fifo cledit iconv
TRUE TRUE FALSE TRUE FALSE TRUE
NLS Rprof profmem cairo ICU long.double
TRUE TRUE TRUE TRUE TRUE TRUE
libcurl
TRUE External software:
zlib
"1.3"
bzlib
"1.0.8, 13-Jul-2019"
xz
"5.4.5"
libdeflate
"1.19"
PCRE
"10.42 2022-12-11"
ICU
"74.2"
TRE
"TRE 0.8.0 R_fixes (BSD)"
iconv
"glibc 2.39"
readline
"8.2"
BLAS
"/usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3" Graphics external software:
cairo cairoFT pango
"1.18.0" "" "1.52.1"
libpng jpeg libtiff
"1.6.43" "8.0" "LIBTIFF, Version 4.5.1" Numerical characteristics of the machine:
double.eps double.neg.eps double.xmin
2.220446e-16 1.110223e-16 2.225074e-308
double.xmax double.base double.digits
1.797693e+308 2.000000e+00 5.300000e+01
double.rounding double.guard double.ulp.digits
5.000000e+00 0.000000e+00 -5.200000e+01
double.neg.ulp.digits double.exponent double.min.exp
-5.300000e+01 1.100000e+01 -1.022000e+03
double.max.exp integer.max sizeof.long
1.024000e+03 2.147484e+09 8.000000e+00
sizeof.longlong sizeof.longdouble sizeof.pointer
8.000000e+00 1.600000e+01 8.000000e+00
sizeof.time_t longdouble.eps longdouble.neg.eps
8.000000e+00 1.084202e-19 5.421011e-20
longdouble.digits longdouble.rounding longdouble.guard
6.400000e+01 5.000000e+00 0.000000e+00
longdouble.ulp.digits longdouble.neg.ulp.digits longdouble.exponent
-6.300000e+01 -6.400000e+01 1.500000e+01
longdouble.min.exp longdouble.max.exp
-1.638200e+04 1.638400e+04 Random number generation process:
[1] "Mersenne-Twister" "Inversion" "Rejection" Information about the environment
Environmental and options variables affect how package checks and software in it might behave. Here is the environmental variables when running this report
_R_CHECK_SYSTEM_CLOCK_
FALSE
ACCEPT_EULA Y
ACTIONS_RUNNER_ACTION_ARCHIVE_CACHE
/opt/actionarchivecache
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ANT_HOME /usr/share/ant
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BOOTSTRAP_HASKELL_NONINTERACTIVE
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GITHUB_TRIGGERING_ACTOR
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GITHUB_WORKFLOW Update package repositories
GITHUB_WORKFLOW_REF pharmaR/pharmapkgs/.github/workflows/update-repos.yml@refs/heads/main
GITHUB_WORKFLOW_SHA a8b95a62e6dc098bb3af41043304208245a9ed4a
GITHUB_WORKSPACE /home/runner/work/pharmapkgs/pharmapkgs
GOROOT_1_21_X64 /opt/hostedtoolcache/go/1.21.13/x64
GOROOT_1_22_X64 /opt/hostedtoolcache/go/1.22.12/x64
GOROOT_1_23_X64 /opt/hostedtoolcache/go/1.23.6/x64
GRADLE_HOME /usr/share/gradle-8.12.1
HOME /home/runner
HOMEBREW_CLEANUP_PERIODIC_FULL_DAYS
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HOMEBREW_NO_AUTO_UPDATE
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ImageOS ubuntu24
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INVOCATION_ID 8bd4b7db4d15432e8df0477a564753c1
JAVA_HOME /usr/lib/jvm/temurin-17-jdk-amd64
JAVA_HOME_11_X64 /usr/lib/jvm/temurin-11-jdk-amd64
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JOURNAL_STREAM 8:7410
LANG C.UTF-8
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LN_S ln -s
LOGGER_LOG_LEVEL DEBUG
MAKE make
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MEMORY_PRESSURE_WRITE c29tZSAyMDAwMDAgMjAwMDAwMAA=
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NVM_DIR /home/runner/.nvm
PAGER /usr/bin/pager
PATH /snap/bin:/home/runner/.local/bin:/opt/pipx_bin:/home/runner/.cargo/bin:/home/runner/.config/composer/vendor/bin:/usr/local/.ghcup/bin:/home/runner/.dotnet/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
PERFLOG_LOCATION_SETTING
RUNNER_PERFLOG
PHARMAPKGS_EXCLUDED_METRICS
assess_covr_coverage,assess_r_cmd_check
PHARMAPKGS_LIMIT 1000
PHARMAPKGS_PLATFORM ubuntu-22.04
PHARMAPKGS_R_VERSION 4.4
PHARMAPKGS_REMOTE_REPO
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PIPX_HOME /opt/pipx
PKGCACHE_HTTP_VERSION 2
PKGLOAD_PARENT_TEMPDIR
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POWERSHELL_DISTRIBUTION_CHANNEL
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YES
PWD /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_BIN_PATH /opt/quarto/bin
QUARTO_DENO /opt/quarto/bin/tools/x86_64/deno
QUARTO_DOCUMENT_PATH /home/runner/work/pharmapkgs/pharmapkgs/inst/report
QUARTO_PROFILE
QUARTO_PROJECT_DIR /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_PROJECT_ROOT /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_ROOT /
QUARTO_SHARE_PATH /opt/quarto/share
R_ARCH
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R_PLATFORM x86_64-pc-linux-gnu
R_PRINTCMD /usr/bin/lpr
R_RD4PDF times,inconsolata,hyper
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R_STRIP_SHARED_LIB strip --strip-unneeded
R_STRIP_STATIC_LIB strip --strip-debug
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R_UNZIPCMD /usr/bin/unzip
R_ZIPCMD /usr/bin/zip
RUNNER_ARCH X64
RUNNER_ENVIRONMENT github-hosted
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RUNNER_PERFLOG /home/runner/perflog
RUNNER_TEMP /home/runner/work/_temp
RUNNER_TOOL_CACHE /opt/hostedtoolcache
RUNNER_TRACKING_ID github_40220c0a-4f03-4847-8b7e-3a374b87939a
RUNNER_USER runner
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SED /usr/bin/sed
SELENIUM_JAR_PATH /usr/share/java/selenium-server.jar
SGX_AESM_ADDR 1
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STATS_D true
STATS_D_D true
STATS_D_TC true
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SWIFT_PATH /usr/share/swift/usr/bin
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TAR /usr/bin/tar
TZ UTC
USER runner
VCPKG_INSTALLATION_ROOT
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XDG_CONFIG_HOME /home/runner/.config
XDG_RUNTIME_DIR /run/user/1001These are the options set to generate the report:
$add.smooth
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$bitmapType
[1] "cairo"
$browser
[1] "xdg-open"
$browserNLdisabled
[1] FALSE
$callr.condition_handler_cli_message
function (msg)
{
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else {
cli_server_default(msg)
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<bytecode: 0x55df10c4c910>
<environment: namespace:cli>
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$demo.ask
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<bytecode: 0x55df10122d38>
<environment: namespace:knitr>
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$locatorBell
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$matprod
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$na.action
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$repos
CRAN
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$rl_word_breaks
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$rlang_trace_top_env
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$scipen
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$show.coef.Pvalues
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$show.error.messages
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$show.signif.stars
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$showErrorCalls
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$showNCalls
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$str
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$str$digits.d
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$str$vec.len
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$str$list.len
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$str$deparse.lines
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$str$drop.deparse.attr
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$str$formatNum
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<environment: 0x55df10124520>
$str.dendrogram.last
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$texi2dvi
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$tikzMetricsDictionary
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$timeout
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$try.outFile
A connection with
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mode "w+b"
text "binary"
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can read "yes"
can write "yes"
$ts.eps
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$ts.S.compat
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$unzip
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$verbose
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$warning.length
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$warnPartialMatchArgs
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$warnPartialMatchAttr
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$warnPartialMatchDollar
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$width
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