Validation Report - emuR@2.5.0

Context

This report is fully automated and builds on rhub/ref-image image. Documents the installation of this package on an open source R environment, focusing on:

  • Installation environment description
  • Testing coverage

It is limited to assess whether unit tests and documentation are present and can execute without error. An assessment would be required that the tests and documentation are meaningful.

Package emuR

Metric based risk assessment

The following metrics are derived from the riskmetric R package.

has_news 1
news_current TRUE
exported_namespace 180
has_vignettes 0
export_help 180
has_website TRUE
has_maintainer Markus Jochim
bugs_status subscript out of bounds
has_source_control https://github.com/IPS-LMU/emuR
has_bug_reports_url 1
downloads_1yr 7318
reverse_dependencies 1
has_examples 0.7758621
dependencies 24
license GPL (>= 2)

Package general assessment: Coverage, check results, size, download the last year, reverse dependencies and number of dependencies.

Dependencies

Overall the package has these dependencies:

package type
1 tools Imports
2 utils Imports
3 graphics Imports
4 methods Imports
5 rlang Imports
6 stringr (>= 1.4.0) Imports
7 uuid Imports
8 base64enc Imports
9 shiny Imports
10 wrassp (>= 0.1.4) Imports
11 jsonlite (>= 1.6.1) Imports
12 RSQLite (>= 2.0.0) Imports
13 DBI (>= 0.3.1) Imports
14 httpuv (>= 1.3.2) Imports
15 dplyr (>= 0.7.8) Imports
16 readr (>= 1.1.1) Imports
17 tibble (>= 1.4.2) Imports
18 purrr (>= 0.2.4) Imports
19 tidyr(>= 0.8.2) Imports
20 mime(>= 0.6) Imports
21 rstudioapi(>= 0.10) Imports
22 httr(>= 1.4.1) Imports
23 V8(>= 3.4.0) Imports
24 cli(>= 2.5.0) Imports

Package dependencies

Reverse dependencies

Overall the package has 1 reverse dependencies:

praatpicture

Namespace

Overall the package has 180 exported objects. 180 are documented:

               add_attrDefLabelGroup              add_attributeDefinition 
                                TRUE                                 TRUE 
                           add_files                       add_labelGroup 
                                TRUE                                 TRUE 
                 add_levelDefinition                   add_linkDefinition 
                                TRUE                                 TRUE 
                     add_perspective              add_ssffTrackDefinition 
                                TRUE                                 TRUE 
                         as.spectral                         as.trackdata 
                                TRUE                                 TRUE 
             autobuild_linkFromTimes                                 bark 
                                TRUE                                 TRUE 
                          bayes.dist                            bayes.lab 
                                TRUE                                 TRUE 
                     bayesian.metric                            bayesplot 
                                TRUE                                 TRUE 
                                bind                           buildtrack 
                                TRUE                                 TRUE 
                             cen.sub                             classify 
                                TRUE                                 TRUE 
                           classplot                              closest 
                                TRUE                                 TRUE 
               convert_BPFCollection                  convert_legacyEmuDB 
                                TRUE                                 TRUE 
          convert_TextGridCollection                convert_txtCollection 
                                TRUE                                 TRUE 
                  convert_wideToLong                                   cr 
                                TRUE                                 TRUE 
                        create_emuDB                  create_emuRdemoData 
                                TRUE                                 TRUE 
                create_emuRtrackdata                  create_itemsInLevel 
                                TRUE                                 TRUE 
                        create_links   create_spectrogram_image_as_raster 
                                TRUE                                 TRUE 
                              crplot                               dapply 
                                TRUE                                 TRUE 
                              dbnorm                            dbtopower 
                                TRUE                                 TRUE 
                                 dct                                 dcut 
                                TRUE                                 TRUE 
                            dcut.sub                                ddiff 
                                TRUE                                 TRUE 
                           ddiff.sub                  delete_itemsInLevel 
                                TRUE                                 TRUE 
                            dextract                         dextract.lab 
                                TRUE                                 TRUE 
                        dextract.sub                             distance 
                                TRUE                                 TRUE 
                               dplot                           dplot.norm 
                                TRUE                                 TRUE 
                          dplot.time                              dsmooth 
                                TRUE                                 TRUE 
                         dsmooth.sub                                dtime 
                                TRUE                                 TRUE 
                     duplicate_level                                  dur 
                                TRUE                                 TRUE 
                             ellipse                     emusegs.database 
                                TRUE                                 TRUE 
                       emusegs.query                         emusegs.type 
                                TRUE                                 TRUE 
                               epgai                                epgci 
                                TRUE                                 TRUE 
                              epgcog                                epgdi 
                                TRUE                                 TRUE 
                               epggs                              epgplot 
                                TRUE                                 TRUE 
                              epgsum                                eplot 
                                TRUE                                 TRUE 
                           euclidean                        expand_labels 
                                TRUE                                 TRUE 
                export_BPFCollection        export_seglistToTxtCollection 
                                TRUE                                 TRUE 
           export_TextGridCollection                               fapply 
                                TRUE                                 TRUE 
                              frames                          frames.time 
                                TRUE                                 TRUE 
                           freqtoint                            gerst.sub 
                                TRUE                                 TRUE 
                     get_legalLabels               get_levelCanvasesOrder 
                                TRUE                                 TRUE 
             get_signalCanvasesOrder                        get_trackdata 
                                TRUE                                 TRUE 
                    get.time.element                      get.trackkeywrd 
                                TRUE                                 TRUE 
                   import_mediaFiles                           is.seglist 
                                TRUE                                 TRUE 
                         is.spectral                         is.trackdata 
                                TRUE                                 TRUE 
                               label                        label_convert 
                                TRUE                                 TRUE 
                           label_num                               linear 
                                TRUE                                 TRUE 
                           linear.av              list_attrDefLabelGroups 
                                TRUE                                 TRUE 
           list_attributeDefinitions                         list_bundles 
                                TRUE                                 TRUE 
                          list_files                     list_labelGroups 
                                TRUE                                 TRUE 
               list_levelDefinitions                 list_linkDefinitions 
                                TRUE                                 TRUE 
                   list_perspectives                     list_sampleRates 
                                TRUE                                 TRUE 
                       list_sessions            list_ssffTrackDefinitions 
                                TRUE                                 TRUE 
                          load_emuDB                              lob.sub 
                                TRUE                                 TRUE 
                               locus                                mahal 
                                TRUE                                 TRUE 
                          mahal.dist                   mahalanobis.metric 
                                TRUE                                 TRUE 
                       make.emuRsegs                         make.seglist 
                                TRUE                                 TRUE 
                             makelab                              matscan 
                                TRUE                                 TRUE 
                                 mel                       modify.seglist 
                                TRUE                                 TRUE 
                             moments                            mu.colour 
                                TRUE                                 TRUE 
                       mu.colour.get                            mu.legend 
                                TRUE                                 TRUE 
                     mu.linetype.get                              muclass 
                                TRUE                                 TRUE 
                          nearey.sub                                 norm 
                                TRUE                                 TRUE 
                    normalize_length                             outliers 
                                TRUE                                 TRUE 
                              palate                              perform 
                                TRUE                                 TRUE 
                              plafit                          polygonplot 
                                TRUE                                 TRUE 
                               query                                  rad 
                                TRUE                                 TRUE 
                             radians                       randomise.segs 
                                TRUE                                 TRUE 
                     read_bundleList                         read.emusegs 
                                TRUE                                 TRUE 
            remove_attrDefLabelGroup           remove_attributeDefinition 
                                TRUE                                 TRUE 
                   remove_labelGroup                   remove_legalLabels 
                                TRUE                                 TRUE 
              remove_levelDefinition                remove_linkDefinition 
                                TRUE                                 TRUE 
                  remove_perspective           remove_ssffTrackDefinition 
                                TRUE                                 TRUE 
          rename_attributeDefinition                       rename_bundles 
                                TRUE                                 TRUE 
                        rename_emuDB                   replace_itemLabels 
                                TRUE                                 TRUE 
                        requery_hier                          requery_seq 
                                TRUE                                 TRUE 
                     resample_annots                        rescale.gerst 
                                TRUE                                 TRUE 
                         rescale.lob                       rescale.nearey 
                                TRUE                                 TRUE 
                runBASwebservice_all             runBASwebservice_chunker 
                                TRUE                                 TRUE 
runBASwebservice_g2pForPronunciation  runBASwebservice_g2pForTokenization 
                                TRUE                                 TRUE 
               runBASwebservice_maus               runBASwebservice_minni 
                                TRUE                                 TRUE 
   runBASwebservice_pho2sylCanonical    runBASwebservice_pho2sylSegmental 
                                TRUE                                 TRUE 
                               serve                      set_legalLabels 
                                TRUE                                 TRUE 
              set_levelCanvasesOrder              set_signalCanvasesOrder 
                                TRUE                                 TRUE 
                               shift                           Slope.test 
                                TRUE                                 TRUE 
                          sortmatrix                          splitstring 
                                TRUE                                 TRUE 
                      track.gradinfo                   track.gradinfo.sub 
                                TRUE                                 TRUE 
                           trackfreq                           tracktimes 
                                TRUE                                 TRUE 
                               train                              trapply 
                                TRUE                                 TRUE 
                 update_itemsInLevel                                  utt 
                                TRUE                                 TRUE 
                    write_bundleList                        write.emusegs 
                                TRUE                                 TRUE 

Examples

There are 180 help pages with examples, from 232 (77.59 %).

NEWS

The package has NEWS file and it is current.

License

The package uses .

Installation environment

System Info

Field Value
Image rhub/ref-image
OS Ubuntu 24.04.1 LTS
Platform x86_64-pc-linux-gnu
System x86_64, linux-gnu
Execution Time 2025-02-19 04:05:49 UTC

System information. Table about the system used to check the package.

R Session Info

Information about the R environment and capabilities:

R version 4.4.2 (2024-10-31)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 24.04.1 LTS

Matrix products: default
BLAS:   /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so;  LAPACK version 3.12.0

locale:
 [1] LC_CTYPE=C.UTF-8       LC_NUMERIC=C           LC_TIME=C.UTF-8       
 [4] LC_COLLATE=C.UTF-8     LC_MONETARY=C.UTF-8    LC_MESSAGES=C.UTF-8   
 [7] LC_PAPER=C.UTF-8       LC_NAME=C              LC_ADDRESS=C          
[10] LC_TELEPHONE=C         LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C   

time zone: UTC
tzcode source: system (glibc)

attached base packages:
[1] tools     stats     graphics  grDevices utils     datasets  methods  
[8] base     

loaded via a namespace (and not attached):
 [1] riskreports_0.0.0.9003 compiler_4.4.2         fastmap_1.2.0         
 [4] cli_3.6.4              htmltools_0.5.8.1      yaml_2.3.10           
 [7] rmarkdown_2.29         knitr_1.49             jsonlite_1.8.9        
[10] xfun_0.50              digest_0.6.37          rlang_1.1.5           
[13] evaluate_1.0.3        

Platform used:

   OS.type   file.sep dynlib.ext        GUI     endian    pkgType   path.sep 
    "unix"        "/"      ".so"      "X11"   "little"   "source"        ":" 
    r_arch 
        "" 

R’s capabilities:

       jpeg         png        tiff       tcltk         X11        aqua 
       TRUE        TRUE        TRUE        TRUE       FALSE       FALSE 
   http/ftp     sockets      libxml        fifo      cledit       iconv 
       TRUE        TRUE       FALSE        TRUE       FALSE        TRUE 
        NLS       Rprof     profmem       cairo         ICU long.double 
       TRUE        TRUE        TRUE        TRUE        TRUE        TRUE 
    libcurl 
       TRUE 

External software:

                                                     zlib 
                                                    "1.3" 
                                                    bzlib 
                                     "1.0.8, 13-Jul-2019" 
                                                       xz 
                                                  "5.4.5" 
                                               libdeflate 
                                                   "1.19" 
                                                     PCRE 
                                       "10.42 2022-12-11" 
                                                      ICU 
                                                   "74.2" 
                                                      TRE 
                                "TRE 0.8.0 R_fixes (BSD)" 
                                                    iconv 
                                             "glibc 2.39" 
                                                 readline 
                                                    "8.2" 
                                                     BLAS 
"/usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3" 

Graphics external software:

                   cairo                  cairoFT                    pango 
                "1.18.0"                       ""                 "1.52.1" 
                  libpng                     jpeg                  libtiff 
                "1.6.43"                    "8.0" "LIBTIFF, Version 4.5.1" 

Numerical characteristics of the machine:

               double.eps            double.neg.eps               double.xmin 
             2.220446e-16              1.110223e-16             2.225074e-308 
              double.xmax               double.base             double.digits 
            1.797693e+308              2.000000e+00              5.300000e+01 
          double.rounding              double.guard         double.ulp.digits 
             5.000000e+00              0.000000e+00             -5.200000e+01 
    double.neg.ulp.digits           double.exponent            double.min.exp 
            -5.300000e+01              1.100000e+01             -1.022000e+03 
           double.max.exp               integer.max               sizeof.long 
             1.024000e+03              2.147484e+09              8.000000e+00 
          sizeof.longlong         sizeof.longdouble            sizeof.pointer 
             8.000000e+00              1.600000e+01              8.000000e+00 
            sizeof.time_t            longdouble.eps        longdouble.neg.eps 
             8.000000e+00              1.084202e-19              5.421011e-20 
        longdouble.digits       longdouble.rounding          longdouble.guard 
             6.400000e+01              5.000000e+00              0.000000e+00 
    longdouble.ulp.digits longdouble.neg.ulp.digits       longdouble.exponent 
            -6.300000e+01             -6.400000e+01              1.500000e+01 
       longdouble.min.exp        longdouble.max.exp 
            -1.638200e+04              1.638400e+04 

Random number generation process:

[1] "Mersenne-Twister" "Inversion"        "Rejection"       

Information about the environment

Environmental and options variables affect how package checks and software in it might behave. Here is the environmental variables when running this report

_R_CHECK_SYSTEM_CLOCK_
                        FALSE
ACCEPT_EULA             Y
ACTIONS_RUNNER_ACTION_ARCHIVE_CACHE
                        /opt/actionarchivecache
AGENT_TOOLSDIRECTORY    /opt/hostedtoolcache
ANDROID_HOME            /usr/local/lib/android/sdk
ANDROID_NDK             /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_HOME        /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_LATEST_HOME
                        /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_ROOT        /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_SDK_ROOT        /usr/local/lib/android/sdk
ANT_HOME                /usr/share/ant
AZURE_EXTENSION_DIR     /opt/az/azcliextensions
BOOTSTRAP_HASKELL_NONINTERACTIVE
                        1
BUNDLE_EXT              linux-amd64.deb
CHROME_BIN              /usr/bin/google-chrome
CHROMEWEBDRIVER         /usr/local/share/chromedriver-linux64
CI                      true
CONDA                   /usr/share/miniconda
DEBIAN_FRONTEND         noninteractive
DENO_DOM_PLUGIN         /opt/quarto/bin/tools/x86_64/deno_dom/libplugin.so
DENO_NO_UPDATE_CHECK    1
DENO_TLS_CA_STORE       system,mozilla
DEPLOYMENT_BASEPATH     /opt/runner
DOTNET_MULTILEVEL_LOOKUP
                        0
DOTNET_NOLOGO           1
DOTNET_SKIP_FIRST_TIME_EXPERIENCE
                        1
EDGEWEBDRIVER           /usr/local/share/edge_driver
EDITOR                  vi
GECKOWEBDRIVER          /usr/local/share/gecko_driver
GHCUP_INSTALL_BASE_PREFIX
                        /usr/local
GITHUB_ACTION           __run
GITHUB_ACTION_REF       
GITHUB_ACTION_REPOSITORY
                        
GITHUB_ACTIONS          true
GITHUB_ACTOR            llrs-roche
GITHUB_ACTOR_ID         185338939
GITHUB_API_URL          https://api.github.com
GITHUB_BASE_REF         
GITHUB_ENV              /home/runner/work/_temp/_runner_file_commands/set_env_c412a26f-cd8a-499e-b689-b0767882aa5e
GITHUB_EVENT_NAME       schedule
GITHUB_EVENT_PATH       /home/runner/work/_temp/_github_workflow/event.json
GITHUB_GRAPHQL_URL      https://api.github.com/graphql
GITHUB_HEAD_REF         
GITHUB_JOB              main
GITHUB_OUTPUT           /home/runner/work/_temp/_runner_file_commands/set_output_c412a26f-cd8a-499e-b689-b0767882aa5e
GITHUB_PATH             /home/runner/work/_temp/_runner_file_commands/add_path_c412a26f-cd8a-499e-b689-b0767882aa5e
GITHUB_REF              refs/heads/main
GITHUB_REF_NAME         main
GITHUB_REF_PROTECTED    false
GITHUB_REF_TYPE         branch
GITHUB_REPOSITORY       pharmaR/pharmapkgs
GITHUB_REPOSITORY_ID    798326913
GITHUB_REPOSITORY_OWNER
                        pharmaR
GITHUB_REPOSITORY_OWNER_ID
                        42115094
GITHUB_RETENTION_DAYS   90
GITHUB_RUN_ATTEMPT      1
GITHUB_RUN_ID           13404668958
GITHUB_RUN_NUMBER       96
GITHUB_SERVER_URL       https://github.com
GITHUB_SHA              a8b95a62e6dc098bb3af41043304208245a9ed4a
GITHUB_STATE            /home/runner/work/_temp/_runner_file_commands/save_state_c412a26f-cd8a-499e-b689-b0767882aa5e
GITHUB_STEP_SUMMARY     /home/runner/work/_temp/_runner_file_commands/step_summary_c412a26f-cd8a-499e-b689-b0767882aa5e
GITHUB_TRIGGERING_ACTOR
                        llrs-roche
GITHUB_WORKFLOW         Update package repositories
GITHUB_WORKFLOW_REF     pharmaR/pharmapkgs/.github/workflows/update-repos.yml@refs/heads/main
GITHUB_WORKFLOW_SHA     a8b95a62e6dc098bb3af41043304208245a9ed4a
GITHUB_WORKSPACE        /home/runner/work/pharmapkgs/pharmapkgs
GOROOT_1_21_X64         /opt/hostedtoolcache/go/1.21.13/x64
GOROOT_1_22_X64         /opt/hostedtoolcache/go/1.22.12/x64
GOROOT_1_23_X64         /opt/hostedtoolcache/go/1.23.6/x64
GRADLE_HOME             /usr/share/gradle-8.12.1
HOME                    /home/runner
HOMEBREW_CLEANUP_PERIODIC_FULL_DAYS
                        3650
HOMEBREW_NO_AUTO_UPDATE
                        1
ImageOS                 ubuntu24
ImageVersion            20250209.1.0
INVOCATION_ID           8bd4b7db4d15432e8df0477a564753c1
JAVA_HOME               /usr/lib/jvm/temurin-17-jdk-amd64
JAVA_HOME_11_X64        /usr/lib/jvm/temurin-11-jdk-amd64
JAVA_HOME_17_X64        /usr/lib/jvm/temurin-17-jdk-amd64
JAVA_HOME_21_X64        /usr/lib/jvm/temurin-21-jdk-amd64
JAVA_HOME_8_X64         /usr/lib/jvm/temurin-8-jdk-amd64
JOURNAL_STREAM          8:7410
LANG                    C.UTF-8
LD_LIBRARY_PATH         /opt/R/4.4.2/lib/R/lib:/usr/local/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/temurin-17-jdk-amd64/lib/server:/opt/R/4.4.2/lib/R/lib:/usr/local/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/temurin-17-jdk-amd64/lib/server
LN_S                    ln -s
LOGGER_LOG_LEVEL        DEBUG
MAKE                    make
MEMORY_PRESSURE_WATCH   /sys/fs/cgroup/system.slice/runner-provisioner.service/memory.pressure
MEMORY_PRESSURE_WRITE   c29tZSAyMDAwMDAgMjAwMDAwMAA=
NOT_CRAN                true
NVM_DIR                 /home/runner/.nvm
PAGER                   /usr/bin/pager
PATH                    /snap/bin:/home/runner/.local/bin:/opt/pipx_bin:/home/runner/.cargo/bin:/home/runner/.config/composer/vendor/bin:/usr/local/.ghcup/bin:/home/runner/.dotnet/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
PERFLOG_LOCATION_SETTING
                        RUNNER_PERFLOG
PHARMAPKGS_EXCLUDED_METRICS
                        assess_covr_coverage,assess_r_cmd_check
PHARMAPKGS_LIMIT        1000
PHARMAPKGS_PLATFORM     ubuntu-22.04
PHARMAPKGS_R_VERSION    4.4
PHARMAPKGS_REMOTE_REPO
                        https://cloud.r-project.org/
PIPX_BIN_DIR            /opt/pipx_bin
PIPX_HOME               /opt/pipx
PKGCACHE_HTTP_VERSION   2
PKGLOAD_PARENT_TEMPDIR
                        /tmp/RtmpZYt03y
POWERSHELL_DISTRIBUTION_CHANNEL
                        GitHub-Actions-ubuntu24
PROCESSX_PS1d452b879933_1739937943
                        YES
PWD                     /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_BIN_PATH         /opt/quarto/bin
QUARTO_DENO             /opt/quarto/bin/tools/x86_64/deno
QUARTO_DOCUMENT_PATH    /home/runner/work/pharmapkgs/pharmapkgs/inst/report
QUARTO_PROFILE          
QUARTO_PROJECT_DIR      /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_PROJECT_ROOT     /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_ROOT             /
QUARTO_SHARE_PATH       /opt/quarto/share
R_ARCH                  
R_BROWSER               xdg-open
R_BZIPCMD               /usr/bin/bzip2
R_DOC_DIR               /opt/R/4.4.2/lib/R/doc
R_GZIPCMD               /usr/bin/gzip
R_HOME                  /opt/R/4.4.2/lib/R
R_INCLUDE_DIR           /opt/R/4.4.2/lib/R/include
R_LIB_FOR_PAK           /opt/R/4.4.2/lib/R/site-library
R_LIBS_SITE             /opt/R/4.4.2/lib/R/site-library
R_LIBS_USER             /home/runner/work/_temp/Library
R_PAPERSIZE             letter
R_PAPERSIZE_USER        letter
R_PDFVIEWER             /usr/bin/xdg-open
R_PLATFORM              x86_64-pc-linux-gnu
R_PRINTCMD              /usr/bin/lpr
R_RD4PDF                times,inconsolata,hyper
R_SESSION_TMPDIR        /tmp/Rtmpbu8RIx
R_SHARE_DIR             /opt/R/4.4.2/lib/R/share
R_STRIP_SHARED_LIB      strip --strip-unneeded
R_STRIP_STATIC_LIB      strip --strip-debug
R_TEXI2DVICMD           /usr/bin/texi2dvi
R_UNZIPCMD              /usr/bin/unzip
R_ZIPCMD                /usr/bin/zip
RUNNER_ARCH             X64
RUNNER_ENVIRONMENT      github-hosted
RUNNER_NAME             GitHub Actions 2
RUNNER_OS               Linux
RUNNER_PERFLOG          /home/runner/perflog
RUNNER_TEMP             /home/runner/work/_temp
RUNNER_TOOL_CACHE       /opt/hostedtoolcache
RUNNER_TRACKING_ID      github_40220c0a-4f03-4847-8b7e-3a374b87939a
RUNNER_USER             runner
RUNNER_WORKSPACE        /home/runner/work/pharmapkgs
SED                     /usr/bin/sed
SELENIUM_JAR_PATH       /usr/share/java/selenium-server.jar
SGX_AESM_ADDR           1
SHLVL                   1
STATS_D                 true
STATS_D_D               true
STATS_D_TC              true
STATS_EXT               true
STATS_EXTP              https://provjobdprod.z13.web.core.windows.net/settings/provjobdsettings-latest/provjobd.data
STATS_PIP               false
STATS_RDCL              true
STATS_TRP               true
STATS_UE                true
STATS_V3PS              true
STATS_VMD               true
STATS_VMFE              true
SWIFT_PATH              /usr/share/swift/usr/bin
SYSTEMD_EXEC_PID        837
TAR                     /usr/bin/tar
TZ                      UTC
USER                    runner
VCPKG_INSTALLATION_ROOT
                        /usr/local/share/vcpkg
XDG_CONFIG_HOME         /home/runner/.config
XDG_RUNTIME_DIR         /run/user/1001

These are the options set to generate the report:

$add.smooth
[1] TRUE

$bitmapType
[1] "cairo"

$browser
[1] "xdg-open"

$browserNLdisabled
[1] FALSE

$callr.condition_handler_cli_message
function (msg) 
{
    custom_handler <- getOption("cli.default_handler")
    if (is.function(custom_handler)) {
        custom_handler(msg)
    }
    else {
        cli_server_default(msg)
    }
}
<bytecode: 0x5608dd1ce910>
<environment: namespace:cli>

$catch.script.errors
[1] FALSE

$CBoundsCheck
[1] FALSE

$check.bounds
[1] FALSE

$citation.bibtex.max
[1] 1

$continue
[1] "+ "

$contrasts
        unordered           ordered 
"contr.treatment"      "contr.poly" 

$covr.record_tests
[1] TRUE

$defaultPackages
[1] "datasets"  "utils"     "grDevices" "graphics"  "stats"     "methods"  

$demo.ask
[1] "default"

$deparse.cutoff
[1] 60

$device
function (width = 7, height = 7, ...) 
{
    grDevices::pdf(NULL, width, height, ...)
}
<bytecode: 0x5608dc6b18e8>
<environment: namespace:knitr>

$device.ask.default
[1] FALSE

$digits
[1] 7

$dvipscmd
[1] "dvips"

$echo
[1] FALSE

$editor
[1] "vi"

$encoding
[1] "native.enc"

$example.ask
[1] "default"

$expressions
[1] 5000

$help.search.types
[1] "vignette" "demo"     "help"    

$help.try.all.packages
[1] FALSE

$htmltools.preserve.raw
[1] TRUE

$HTTPUserAgent
[1] "R/4.4.2 R (4.4.2 x86_64-pc-linux-gnu x86_64 linux-gnu) on GitHub Actions"

$internet.info
[1] 2

$keep.parse.data
[1] TRUE

$keep.parse.data.pkgs
[1] FALSE

$keep.source
[1] FALSE

$keep.source.pkgs
[1] FALSE

$knitr.in.progress
[1] TRUE

$locatorBell
[1] TRUE

$mailer
[1] "mailto"

$matprod
[1] "default"

$max.contour.segments
[1] 25000

$max.print
[1] 99999

$menu.graphics
[1] TRUE

$na.action
[1] "na.omit"

$Ncpus
[1] 1

$nwarnings
[1] 50

$OutDec
[1] "."

$pager
[1] "/opt/R/4.4.2/lib/R/bin/pager"

$papersize
[1] "letter"

$PCRE_limit_recursion
[1] NA

$PCRE_study
[1] FALSE

$PCRE_use_JIT
[1] TRUE

$pdfviewer
[1] "/usr/bin/xdg-open"

$pkgType
[1] "source"

$printcmd
[1] "/usr/bin/lpr"

$prompt
[1] "> "

$repos
                      CRAN 
"https://cran.rstudio.com" 

$rl_word_breaks
[1] " \t\n\"\\'`><=%;,|&{()}"

$rlang_trace_top_env
<environment: R_GlobalEnv>

$scipen
[1] 0

$show.coef.Pvalues
[1] TRUE

$show.error.messages
[1] TRUE

$show.signif.stars
[1] TRUE

$showErrorCalls
[1] TRUE

$showNCalls
[1] 50

$showWarnCalls
[1] FALSE

$str
$str$strict.width
[1] "no"

$str$digits.d
[1] 3

$str$vec.len
[1] 4

$str$list.len
[1] 99

$str$deparse.lines
NULL

$str$drop.deparse.attr
[1] TRUE

$str$formatNum
function (x, ...) 
format(x, trim = TRUE, drop0trailing = TRUE, ...)
<environment: 0x5608dc6a6520>


$str.dendrogram.last
[1] "`"

$texi2dvi
[1] "/usr/bin/texi2dvi"

$tikzMetricsDictionary
[1] "validation_report_emuR_v2.5.0-tikzDictionary"

$timeout
[1] 60

$try.outFile
A connection with                    
description ""      
class       "file"  
mode        "w+b"   
text        "binary"
opened      "opened"
can read    "yes"   
can write   "yes"   

$ts.eps
[1] 1e-05

$ts.S.compat
[1] FALSE

$unzip
[1] "/usr/bin/unzip"

$useFancyQuotes
[1] FALSE

$verbose
[1] FALSE

$warn
[1] 0

$warning.length
[1] 1000

$warnPartialMatchArgs
[1] FALSE

$warnPartialMatchAttr
[1] FALSE

$warnPartialMatchDollar
[1] FALSE

$width
[1] 80