Validation Report - effectsize@1.0.0
Context
This report is fully automated and builds on rhub/ref-image image. Documents the installation of this package on an open source R environment, focusing on:
- Installation environment description
- Testing coverage
It is limited to assess whether unit tests and documentation are present and can execute without error. An assessment would be required that the tests and documentation are meaningful.
Package effectsize
Metric based risk assessment
The following metrics are derived from the riskmetric R package.
| has_news | 1 |
| news_current | TRUE |
| exported_namespace | 181 |
| has_vignettes | 22 |
| export_help | 181 |
| has_website | TRUE |
| has_maintainer | Mattan S. Ben-Shachar mattansb@msbstats.info |
| bugs_status | subscript out of bounds |
| has_bug_reports_url | 1 |
| downloads_1yr | 623748 |
| reverse_dependencies | 26 |
| has_examples | 0.8070175 |
| dependencies | 7 |
| license | MIT + file LICENSE |
Package general assessment: Coverage, check results, size, download the last year, reverse dependencies and number of dependencies.
Dependencies
Overall the package has these dependencies:
| package | type | |
|---|---|---|
| 1 | bayestestR (>= 0.15.0) | Imports |
| 2 | insight (>= 1.0.0) | Imports |
| 3 | parameters (>= 0.24.0) | Imports |
| 4 | performance (>= 0.12.4) | Imports |
| 5 | datawizard (>= 0.13.0) | Imports |
| 6 | stats | Imports |
| 7 | utils | Imports |
Package dependencies
Reverse dependencies
Overall the package has 26 reverse dependencies:
bayestestR, bruceR, cardx, datawizard, easystats, ggeffects, gtsummary, insight, Keng, metaConvert, modelbased, multifear, papaja, parameters, psycho, pubh, rempsyc, report, rosetta, see, sjstats, sprtt, statsExpressions, tidystats, visvow, volker
Namespace
Overall the package has 181 exported objects. 181 are documented:
.es_aov_simple .es_aov_strata .es_aov_table
TRUE TRUE TRUE
arr arr_to_logoddsratio arr_to_nnt
TRUE TRUE TRUE
arr_to_oddsratio arr_to_riskratio c_to_w
TRUE TRUE TRUE
chisq_to_cohens_w chisq_to_cramers_v chisq_to_fei
TRUE TRUE TRUE
chisq_to_pearsons_c chisq_to_phi chisq_to_tschuprows_t
TRUE TRUE TRUE
cliffs_delta cohens_d cohens_f
TRUE TRUE TRUE
cohens_f_squared cohens_g cohens_h
TRUE TRUE TRUE
cohens_u1 cohens_u2 cohens_u3
TRUE TRUE TRUE
cohens_w convert_d_to_oddsratio convert_d_to_r
TRUE TRUE TRUE
convert_odds_to_probs convert_oddsratio_to_d convert_oddsratio_to_r
TRUE TRUE TRUE
convert_probs_to_odds convert_r_to_d convert_r_to_oddsratio
TRUE TRUE TRUE
cov_pooled cramers_v d_to_logoddsratio
TRUE TRUE TRUE
d_to_oddsratio d_to_overlap d_to_p_superiority
TRUE TRUE TRUE
d_to_r d_to_u1 d_to_u2
TRUE TRUE TRUE
d_to_u3 display effectsize
TRUE TRUE TRUE
epsilon_squared equivalence_test eta_squared
TRUE TRUE TRUE
eta_squared_posterior eta2_to_f eta2_to_f2
TRUE TRUE TRUE
F_to_d F_to_epsilon2 f_to_eta2
TRUE TRUE TRUE
F_to_eta2 F_to_eta2_adj F_to_f
TRUE TRUE TRUE
F_to_f2 F_to_omega2 F_to_r
TRUE TRUE TRUE
f2_to_eta2 fei fei_to_w
TRUE TRUE TRUE
format_standardize get_effectsize_label get_effectsize_name
TRUE TRUE TRUE
glass_delta hedges_g interpret
TRUE TRUE TRUE
interpret_agfi interpret_bf interpret_cfi
TRUE TRUE TRUE
interpret_cohens_d interpret_cohens_g interpret_cramers_v
TRUE TRUE TRUE
interpret_direction interpret_epsilon_squared interpret_ess
TRUE TRUE TRUE
interpret_eta_squared interpret_fei interpret_gfi
TRUE TRUE TRUE
interpret_glass_delta interpret_hedges_g interpret_icc
TRUE TRUE TRUE
interpret_ifi interpret_kendalls_w interpret_nfi
TRUE TRUE TRUE
interpret_nnfi interpret_oddsratio interpret_omega_squared
TRUE TRUE TRUE
interpret_p interpret_pd interpret_phi
TRUE TRUE TRUE
interpret_pnfi interpret_r interpret_r2
TRUE TRUE TRUE
interpret_r2_semipartial interpret_rank_biserial interpret_rfi
TRUE TRUE TRUE
interpret_rhat interpret_rmsea interpret_rope
TRUE TRUE TRUE
interpret_srmr interpret_vif is_effectsize_name
TRUE TRUE TRUE
is.rules kendalls_w logoddsratio_to_arr
TRUE TRUE TRUE
logoddsratio_to_d logoddsratio_to_nnt logoddsratio_to_r
TRUE TRUE TRUE
logoddsratio_to_riskratio mad_pooled mahalanobis_d
TRUE TRUE TRUE
means_ratio nnt nnt_to_arr
TRUE TRUE TRUE
nnt_to_logoddsratio nnt_to_oddsratio nnt_to_riskratio
TRUE TRUE TRUE
odds_to_probs oddsratio oddsratio_to_arr
TRUE TRUE TRUE
oddsratio_to_d oddsratio_to_nnt oddsratio_to_r
TRUE TRUE TRUE
oddsratio_to_riskratio omega_squared p_overlap
TRUE TRUE TRUE
p_superiority pearsons_c phi
TRUE TRUE TRUE
phi_to_chisq print_html print_md
TRUE TRUE TRUE
probs_to_odds r_to_d r_to_logoddsratio
TRUE TRUE TRUE
r_to_oddsratio r2_semipartial rank_biserial
TRUE TRUE TRUE
rank_epsilon_squared rank_eta_squared rb_to_p_superiority
TRUE TRUE TRUE
rb_to_vda rb_to_wmw_odds repeated_measures_d
TRUE TRUE TRUE
riskratio riskratio_to_arr riskratio_to_logoddsratio
TRUE TRUE TRUE
riskratio_to_nnt riskratio_to_oddsratio rm_d
TRUE TRUE TRUE
rules sd_pooled standardise
TRUE TRUE TRUE
standardize standardize_info standardize_parameters
TRUE TRUE TRUE
standardize_posteriors t_to_d t_to_epsilon2
TRUE TRUE TRUE
t_to_eta2 t_to_eta2_adj t_to_f
TRUE TRUE TRUE
t_to_f2 t_to_omega2 t_to_r
TRUE TRUE TRUE
t_to_v t_to_w tschuprows_t
TRUE TRUE TRUE
v_to_t v_to_w vd_a
TRUE TRUE TRUE
w_to_c w_to_fei w_to_t
TRUE TRUE TRUE
w_to_v wmw_odds z_to_d
TRUE TRUE TRUE
z_to_r
TRUE Examples
There are 46 help pages with examples, from 57 (80.70 %).
NEWS
The package has NEWS file and it is current.
License
The package uses .
Installation environment
System Info
| Field | Value |
|---|---|
| Image | rhub/ref-image |
| OS | Ubuntu 24.04.1 LTS |
| Platform | x86_64-pc-linux-gnu |
| System | x86_64, linux-gnu |
| Execution Time | 2025-02-19 03:47:16 UTC |
System information. Table about the system used to check the package.
R Session Info
Information about the R environment and capabilities:
R version 4.4.2 (2024-10-31)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 24.04.1 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so; LAPACK version 3.12.0
locale:
[1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8
[4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8
[7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C
time zone: UTC
tzcode source: system (glibc)
attached base packages:
[1] tools stats graphics grDevices utils datasets methods
[8] base
loaded via a namespace (and not attached):
[1] riskreports_0.0.0.9003 compiler_4.4.2 fastmap_1.2.0
[4] cli_3.6.4 htmltools_0.5.8.1 yaml_2.3.10
[7] rmarkdown_2.29 knitr_1.49 jsonlite_1.8.9
[10] xfun_0.50 digest_0.6.37 rlang_1.1.5
[13] evaluate_1.0.3 Platform used:
OS.type file.sep dynlib.ext GUI endian pkgType path.sep
"unix" "/" ".so" "X11" "little" "source" ":"
r_arch
"" R’s capabilities:
jpeg png tiff tcltk X11 aqua
TRUE TRUE TRUE TRUE FALSE FALSE
http/ftp sockets libxml fifo cledit iconv
TRUE TRUE FALSE TRUE FALSE TRUE
NLS Rprof profmem cairo ICU long.double
TRUE TRUE TRUE TRUE TRUE TRUE
libcurl
TRUE External software:
zlib
"1.3"
bzlib
"1.0.8, 13-Jul-2019"
xz
"5.4.5"
libdeflate
"1.19"
PCRE
"10.42 2022-12-11"
ICU
"74.2"
TRE
"TRE 0.8.0 R_fixes (BSD)"
iconv
"glibc 2.39"
readline
"8.2"
BLAS
"/usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3" Graphics external software:
cairo cairoFT pango
"1.18.0" "" "1.52.1"
libpng jpeg libtiff
"1.6.43" "8.0" "LIBTIFF, Version 4.5.1" Numerical characteristics of the machine:
double.eps double.neg.eps double.xmin
2.220446e-16 1.110223e-16 2.225074e-308
double.xmax double.base double.digits
1.797693e+308 2.000000e+00 5.300000e+01
double.rounding double.guard double.ulp.digits
5.000000e+00 0.000000e+00 -5.200000e+01
double.neg.ulp.digits double.exponent double.min.exp
-5.300000e+01 1.100000e+01 -1.022000e+03
double.max.exp integer.max sizeof.long
1.024000e+03 2.147484e+09 8.000000e+00
sizeof.longlong sizeof.longdouble sizeof.pointer
8.000000e+00 1.600000e+01 8.000000e+00
sizeof.time_t longdouble.eps longdouble.neg.eps
8.000000e+00 1.084202e-19 5.421011e-20
longdouble.digits longdouble.rounding longdouble.guard
6.400000e+01 5.000000e+00 0.000000e+00
longdouble.ulp.digits longdouble.neg.ulp.digits longdouble.exponent
-6.300000e+01 -6.400000e+01 1.500000e+01
longdouble.min.exp longdouble.max.exp
-1.638200e+04 1.638400e+04 Random number generation process:
[1] "Mersenne-Twister" "Inversion" "Rejection" Information about the environment
Environmental and options variables affect how package checks and software in it might behave. Here is the environmental variables when running this report
_R_CHECK_SYSTEM_CLOCK_
FALSE
ACCEPT_EULA Y
ACTIONS_RUNNER_ACTION_ARCHIVE_CACHE
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ANDROID_NDK_LATEST_HOME
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ANDROID_NDK_ROOT /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_SDK_ROOT /usr/local/lib/android/sdk
ANT_HOME /usr/share/ant
AZURE_EXTENSION_DIR /opt/az/azcliextensions
BOOTSTRAP_HASKELL_NONINTERACTIVE
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GITHUB_TRIGGERING_ACTOR
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GITHUB_WORKFLOW_SHA a8b95a62e6dc098bb3af41043304208245a9ed4a
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GRADLE_HOME /usr/share/gradle-8.12.1
HOME /home/runner
HOMEBREW_CLEANUP_PERIODIC_FULL_DAYS
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HOMEBREW_NO_AUTO_UPDATE
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LN_S ln -s
LOGGER_LOG_LEVEL DEBUG
MAKE make
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NVM_DIR /home/runner/.nvm
PAGER /usr/bin/pager
PATH /snap/bin:/home/runner/.local/bin:/opt/pipx_bin:/home/runner/.cargo/bin:/home/runner/.config/composer/vendor/bin:/usr/local/.ghcup/bin:/home/runner/.dotnet/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
PERFLOG_LOCATION_SETTING
RUNNER_PERFLOG
PHARMAPKGS_EXCLUDED_METRICS
assess_covr_coverage,assess_r_cmd_check
PHARMAPKGS_LIMIT 1000
PHARMAPKGS_PLATFORM ubuntu-22.04
PHARMAPKGS_R_VERSION 4.4
PHARMAPKGS_REMOTE_REPO
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PKGCACHE_HTTP_VERSION 2
PKGLOAD_PARENT_TEMPDIR
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POWERSHELL_DISTRIBUTION_CHANNEL
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YES
PWD /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_BIN_PATH /opt/quarto/bin
QUARTO_DENO /opt/quarto/bin/tools/x86_64/deno
QUARTO_DOCUMENT_PATH /home/runner/work/pharmapkgs/pharmapkgs/inst/report
QUARTO_PROFILE
QUARTO_PROJECT_DIR /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_PROJECT_ROOT /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_ROOT /
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R_ARCH
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R_PLATFORM x86_64-pc-linux-gnu
R_PRINTCMD /usr/bin/lpr
R_RD4PDF times,inconsolata,hyper
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RUNNER_ARCH X64
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SWIFT_PATH /usr/share/swift/usr/bin
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TAR /usr/bin/tar
TZ UTC
USER runner
VCPKG_INSTALLATION_ROOT
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XDG_CONFIG_HOME /home/runner/.config
XDG_RUNTIME_DIR /run/user/1001These are the options set to generate the report:
$add.smooth
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$bitmapType
[1] "cairo"
$browser
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$browserNLdisabled
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$callr.condition_handler_cli_message
function (msg)
{
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else {
cli_server_default(msg)
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<bytecode: 0x5581e841a910>
<environment: namespace:cli>
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$demo.ask
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<environment: namespace:knitr>
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$rl_word_breaks
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$rlang_trace_top_env
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$scipen
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$show.coef.Pvalues
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$show.error.messages
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$show.signif.stars
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$showNCalls
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$str$list.len
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$str$formatNum
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$tikzMetricsDictionary
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mode "w+b"
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$ts.eps
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$width
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