Validation Report - drake@7.13.11

Context

This report is fully automated and builds on rhub/ref-image image. Documents the installation of this package on an open source R environment, focusing on:

  • Installation environment description
  • Testing coverage

It is limited to assess whether unit tests and documentation are present and can execute without error. An assessment would be required that the tests and documentation are meaningful.

Package drake

Metric based risk assessment

The following metrics are derived from the riskmetric R package.

has_news 1
news_current TRUE
exported_namespace 236
has_vignettes 0
export_help 236
has_website TRUE
has_maintainer William Michael Landau
bugs_status subscript out of bounds
has_source_control https://github.com/ropensci/drake
has_bug_reports_url 1
downloads_1yr 21058
reverse_dependencies 0
has_examples 0.9955357
dependencies 11
license GPL-3

Package general assessment: Coverage, check results, size, download the last year, reverse dependencies and number of dependencies.

Dependencies

Overall the package has these dependencies:

package type
1 base64url Imports
2 digest (>= 0.6.21) Imports
3 igraph (>= 2.0.0) Imports
4 methods Imports
5 parallel Imports
6 rlang (>= 0.2.0) Imports
7 storr (>= 1.1.0) Imports
8 tidyselect (>= 1.0.0) Imports
9 txtq (>= 0.2.3) Imports
10 utils Imports
11 vctrs (>= 0.2.0) Imports

Package dependencies

Reverse dependencies

Overall the package has 0 reverse dependencies:

Namespace

Overall the package has 236 exported objects. 236 are documented:

                    all_of                   analyses 
                      TRUE                       TRUE 
         analysis_wildcard                     any_of 
                      TRUE                       TRUE 
         as_drake_filename                    as_file 
                      TRUE                       TRUE 
      available_hash_algos                    backend 
                      TRUE                       TRUE 
                bind_plans          build_drake_graph 
                      TRUE                       TRUE 
               build_graph                build_times 
                      TRUE                       TRUE 
                     built           cache_namespaces 
                      TRUE                       TRUE 
                cache_path                     cached 
                      TRUE                       TRUE 
            cached_planned           cached_unplanned 
                      TRUE                       TRUE 
                    cancel                  cancel_if 
                      TRUE                       TRUE 
                     check                 check_plan 
                      TRUE                       TRUE 
                     clean         clean_main_example 
                      TRUE                       TRUE 
      clean_mtcars_example         cleaned_namespaces 
                      TRUE                       TRUE 
                 cmq_build           code_to_function 
                      TRUE                       TRUE 
              code_to_plan                     config 
                      TRUE                       TRUE 
           configure_cache                   contains 
                      TRUE                       TRUE 
          dataframes_graph           dataset_wildcard 
                      TRUE                       TRUE 
             debug_and_run        default_graph_title 
                      TRUE                       TRUE 
    default_long_hash_algo      default_Makefile_args 
                      TRUE                       TRUE 
  default_Makefile_command        default_parallelism 
                      TRUE                       TRUE 
    default_recipe_command    default_short_hash_algo 
                      TRUE                       TRUE 
      default_system2_args            default_verbose 
                      TRUE                       TRUE 
        dependency_profile         deprecate_wildcard 
                      TRUE                       TRUE 
                      deps                  deps_code 
                      TRUE                       TRUE 
                deps_knitr               deps_profile 
                      TRUE                       TRUE 
         deps_profile_impl                deps_target 
                      TRUE                       TRUE 
          deps_target_impl               deps_targets 
                      TRUE                       TRUE 
                  diagnose                 do_prework 
                      TRUE                       TRUE 
      doc_of_function_call drake_batchtools_tmpl_file 
                      TRUE                       TRUE 
               drake_build           drake_build_impl 
                      TRUE                       TRUE 
               drake_cache            drake_cache_log 
                      TRUE                       TRUE 
      drake_cache_log_file            drake_cancelled 
                      TRUE                       TRUE 
              drake_config                drake_debug 
                      TRUE                       TRUE 
                drake_done                drake_envir 
                      TRUE                       TRUE 
             drake_example             drake_examples 
                      TRUE                       TRUE 
              drake_failed                   drake_gc 
                      TRUE                       TRUE 
    drake_get_session_info               drake_ggraph 
                      TRUE                       TRUE 
         drake_ggraph_impl           drake_graph_info 
                      TRUE                       TRUE 
     drake_graph_info_impl              drake_history 
                      TRUE                       TRUE 
   drake_hpc_template_file   drake_hpc_template_files 
                      TRUE                       TRUE 
                drake_meta              drake_palette 
                      TRUE                       TRUE 
                drake_plan          drake_plan_source 
                      TRUE                       TRUE 
            drake_progress               drake_quotes 
                      TRUE                       TRUE 
             drake_running               drake_script 
                      TRUE                       TRUE 
             drake_session                drake_slice 
                      TRUE                       TRUE 
             drake_strings             drake_tempfile 
                      TRUE                       TRUE 
                 drake_tip              drake_unquote 
                      TRUE                       TRUE 
                 ends_with                   evaluate 
                      TRUE                       TRUE 
             evaluate_plan                 everything 
                      TRUE                       TRUE 
             example_drake             examples_drake 
                      TRUE                       TRUE 
                    expand                expand_plan 
                      TRUE                       TRUE 
            expose_imports                     failed 
                      TRUE                       TRUE 
                   file_in                   file_out 
                      TRUE                       TRUE 
                file_store                 find_cache 
                      TRUE                       TRUE 
            find_knitr_doc               find_project 
                      TRUE                       TRUE 
                 from_plan               future_build 
                      TRUE                       TRUE 
                    gather                  gather_by 
                      TRUE                       TRUE 
               gather_plan                  get_cache 
                      TRUE                       TRUE 
                 get_trace                     id_chr 
                      TRUE                       TRUE 
                    ignore                   imported 
                      TRUE                       TRUE 
               in_progress           is_function_call 
                      TRUE                       TRUE 
           isolate_example                 knitr_deps 
                      TRUE                       TRUE 
                  knitr_in                   last_col 
                      TRUE                       TRUE 
              legend_nodes         load_basic_example 
                      TRUE                       TRUE 
         load_main_example        load_mtcars_example 
                      TRUE                       TRUE 
                     loadd                  long_hash 
                      TRUE                       TRUE 
                      make                  make_impl 
                      TRUE                       TRUE 
              make_imports               make_targets 
                      TRUE                       TRUE 
          make_with_config            Makefile_recipe 
                      TRUE                       TRUE 
             manage_memory                   map_plan 
                      TRUE                       TRUE 
                   matches            max_useful_jobs 
                      TRUE                       TRUE 
     migrate_drake_project                     missed 
                      TRUE                       TRUE 
               missed_impl                  new_cache 
                      TRUE                       TRUE 
                   no_deps                  num_range 
                      TRUE                       TRUE 
                    one_of                   outdated 
                      TRUE                       TRUE 
             outdated_impl            parallel_stages 
                      TRUE                       TRUE 
       parallelism_choices                       plan 
                      TRUE                       TRUE 
             plan_analyses                 plan_drake 
                      TRUE                       TRUE 
            plan_summaries               plan_to_code 
                      TRUE                       TRUE 
          plan_to_notebook                 plot_graph 
                      TRUE                       TRUE 
    predict_load_balancing            predict_runtime 
                      TRUE                       TRUE 
      predict_runtime_impl            predict_workers 
                      TRUE                       TRUE 
      predict_workers_impl             process_import 
                      TRUE                       TRUE 
                  progress          prune_drake_graph 
                      TRUE                       TRUE 
             r_deps_target              r_drake_build 
                      TRUE                       TRUE 
            r_drake_ggraph         r_drake_graph_info 
                      TRUE                       TRUE 
                    r_make                   r_missed 
                      TRUE                       TRUE 
                r_outdated          r_predict_runtime 
                      TRUE                       TRUE 
         r_predict_workers          r_recipe_wildcard 
                      TRUE                       TRUE 
             r_recoverable       r_sankey_drake_graph 
                      TRUE                       TRUE 
        r_text_drake_graph          r_vis_drake_graph 
                      TRUE                       TRUE 
       rate_limiting_times                read_config 
                      TRUE                       TRUE 
         read_drake_config           read_drake_graph 
                      TRUE                       TRUE 
           read_drake_meta            read_drake_plan 
                      TRUE                       TRUE 
           read_drake_seed                 read_graph 
                      TRUE                       TRUE 
                 read_plan                 read_trace 
                      TRUE                       TRUE 
                     readd              recover_cache 
                      TRUE                       TRUE 
               recoverable           recoverable_impl 
                      TRUE                       TRUE 
                 reduce_by                reduce_plan 
                      TRUE                       TRUE 
       render_drake_ggraph         render_drake_graph 
                      TRUE                       TRUE 
              render_graph  render_sankey_drake_graph 
                      TRUE                       TRUE 
 render_static_drake_graph    render_text_drake_graph 
                      TRUE                       TRUE 
              rescue_cache             rs_addin_loadd 
                      TRUE                       TRUE 
           rs_addin_r_make        rs_addin_r_outdated 
                      TRUE                       TRUE 
rs_addin_r_vis_drake_graph                    running 
                      TRUE                       TRUE 
        sankey_drake_graph    sankey_drake_graph_impl 
                      TRUE                       TRUE 
                   session                 shell_file 
                      TRUE                       TRUE 
                short_hash                show_source 
                      TRUE                       TRUE 
               starts_with         static_drake_graph 
                      TRUE                       TRUE 
                subtargets                  summaries 
                      TRUE                       TRUE 
                    target          target_namespaces 
                      TRUE                       TRUE 
          text_drake_graph      text_drake_graph_impl 
                      TRUE                       TRUE 
                this_cache                    tracked 
                      TRUE                       TRUE 
            transform_plan                    trigger 
                      TRUE                       TRUE 
                  triggers         type_sum.expr_list 
                      TRUE                       TRUE 
                 use_drake            vis_drake_graph 
                      TRUE                       TRUE 
      vis_drake_graph_impl                which_clean 
                      TRUE                       TRUE 
                  workflow                   workplan 
                      TRUE                       TRUE 

Examples

There are 223 help pages with examples, from 224 (99.55 %).

NEWS

The package has NEWS file and it is current.

License

The package uses .

Installation environment

System Info

Field Value
Image rhub/ref-image
OS Ubuntu 24.04.1 LTS
Platform x86_64-pc-linux-gnu
System x86_64, linux-gnu
Execution Time 2025-02-18 04:43:04 UTC

System information. Table about the system used to check the package.

R Session Info

Information about the R environment and capabilities:

R version 4.4.2 (2024-10-31)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 24.04.1 LTS

Matrix products: default
BLAS:   /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so;  LAPACK version 3.12.0

locale:
 [1] LC_CTYPE=C.UTF-8       LC_NUMERIC=C           LC_TIME=C.UTF-8       
 [4] LC_COLLATE=C.UTF-8     LC_MONETARY=C.UTF-8    LC_MESSAGES=C.UTF-8   
 [7] LC_PAPER=C.UTF-8       LC_NAME=C              LC_ADDRESS=C          
[10] LC_TELEPHONE=C         LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C   

time zone: UTC
tzcode source: system (glibc)

attached base packages:
[1] tools     stats     graphics  grDevices utils     datasets  methods  
[8] base     

loaded via a namespace (and not attached):
 [1] riskreports_0.0.0.9003 compiler_4.4.2         fastmap_1.2.0         
 [4] cli_3.6.4              htmltools_0.5.8.1      yaml_2.3.10           
 [7] rmarkdown_2.29         knitr_1.49             jsonlite_1.8.9        
[10] xfun_0.50              digest_0.6.37          rlang_1.1.5           
[13] evaluate_1.0.3        

Platform used:

   OS.type   file.sep dynlib.ext        GUI     endian    pkgType   path.sep 
    "unix"        "/"      ".so"      "X11"   "little"   "source"        ":" 
    r_arch 
        "" 

R’s capabilities:

       jpeg         png        tiff       tcltk         X11        aqua 
       TRUE        TRUE        TRUE        TRUE       FALSE       FALSE 
   http/ftp     sockets      libxml        fifo      cledit       iconv 
       TRUE        TRUE       FALSE        TRUE       FALSE        TRUE 
        NLS       Rprof     profmem       cairo         ICU long.double 
       TRUE        TRUE        TRUE        TRUE        TRUE        TRUE 
    libcurl 
       TRUE 

External software:

                                                     zlib 
                                                    "1.3" 
                                                    bzlib 
                                     "1.0.8, 13-Jul-2019" 
                                                       xz 
                                                  "5.4.5" 
                                               libdeflate 
                                                   "1.19" 
                                                     PCRE 
                                       "10.42 2022-12-11" 
                                                      ICU 
                                                   "74.2" 
                                                      TRE 
                                "TRE 0.8.0 R_fixes (BSD)" 
                                                    iconv 
                                             "glibc 2.39" 
                                                 readline 
                                                    "8.2" 
                                                     BLAS 
"/usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3" 

Graphics external software:

                   cairo                  cairoFT                    pango 
                "1.18.0"                       ""                 "1.52.1" 
                  libpng                     jpeg                  libtiff 
                "1.6.43"                    "8.0" "LIBTIFF, Version 4.5.1" 

Numerical characteristics of the machine:

               double.eps            double.neg.eps               double.xmin 
             2.220446e-16              1.110223e-16             2.225074e-308 
              double.xmax               double.base             double.digits 
            1.797693e+308              2.000000e+00              5.300000e+01 
          double.rounding              double.guard         double.ulp.digits 
             5.000000e+00              0.000000e+00             -5.200000e+01 
    double.neg.ulp.digits           double.exponent            double.min.exp 
            -5.300000e+01              1.100000e+01             -1.022000e+03 
           double.max.exp               integer.max               sizeof.long 
             1.024000e+03              2.147484e+09              8.000000e+00 
          sizeof.longlong         sizeof.longdouble            sizeof.pointer 
             8.000000e+00              1.600000e+01              8.000000e+00 
            sizeof.time_t            longdouble.eps        longdouble.neg.eps 
             8.000000e+00              1.084202e-19              5.421011e-20 
        longdouble.digits       longdouble.rounding          longdouble.guard 
             6.400000e+01              5.000000e+00              0.000000e+00 
    longdouble.ulp.digits longdouble.neg.ulp.digits       longdouble.exponent 
            -6.300000e+01             -6.400000e+01              1.500000e+01 
       longdouble.min.exp        longdouble.max.exp 
            -1.638200e+04              1.638400e+04 

Random number generation process:

[1] "Mersenne-Twister" "Inversion"        "Rejection"       

Information about the environment

Environmental and options variables affect how package checks and software in it might behave. Here is the environmental variables when running this report

_R_CHECK_SYSTEM_CLOCK_
                        FALSE
ACCEPT_EULA             Y
ACTIONS_RUNNER_ACTION_ARCHIVE_CACHE
                        /opt/actionarchivecache
AGENT_TOOLSDIRECTORY    /opt/hostedtoolcache
ANDROID_HOME            /usr/local/lib/android/sdk
ANDROID_NDK             /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_HOME        /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_LATEST_HOME
                        /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_ROOT        /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_SDK_ROOT        /usr/local/lib/android/sdk
ANT_HOME                /usr/share/ant
AZURE_EXTENSION_DIR     /opt/az/azcliextensions
BOOTSTRAP_HASKELL_NONINTERACTIVE
                        1
BUNDLE_EXT              linux-amd64.deb
CHROME_BIN              /usr/bin/google-chrome
CHROMEWEBDRIVER         /usr/local/share/chromedriver-linux64
CI                      true
CONDA                   /usr/share/miniconda
DEBIAN_FRONTEND         noninteractive
DENO_DOM_PLUGIN         /opt/quarto/bin/tools/x86_64/deno_dom/libplugin.so
DENO_NO_UPDATE_CHECK    1
DENO_TLS_CA_STORE       system,mozilla
DEPLOYMENT_BASEPATH     /opt/runner
DOTNET_MULTILEVEL_LOOKUP
                        0
DOTNET_NOLOGO           1
DOTNET_SKIP_FIRST_TIME_EXPERIENCE
                        1
EDGEWEBDRIVER           /usr/local/share/edge_driver
EDITOR                  vi
GECKOWEBDRIVER          /usr/local/share/gecko_driver
GHCUP_INSTALL_BASE_PREFIX
                        /usr/local
GITHUB_ACTION           __run
GITHUB_ACTION_REF       
GITHUB_ACTION_REPOSITORY
                        
GITHUB_ACTIONS          true
GITHUB_ACTOR            llrs-roche
GITHUB_ACTOR_ID         185338939
GITHUB_API_URL          https://api.github.com
GITHUB_BASE_REF         
GITHUB_ENV              /home/runner/work/_temp/_runner_file_commands/set_env_b4db8720-2381-4f5c-84c9-546b4603e3d5
GITHUB_EVENT_NAME       schedule
GITHUB_EVENT_PATH       /home/runner/work/_temp/_github_workflow/event.json
GITHUB_GRAPHQL_URL      https://api.github.com/graphql
GITHUB_HEAD_REF         
GITHUB_JOB              main
GITHUB_OUTPUT           /home/runner/work/_temp/_runner_file_commands/set_output_b4db8720-2381-4f5c-84c9-546b4603e3d5
GITHUB_PATH             /home/runner/work/_temp/_runner_file_commands/add_path_b4db8720-2381-4f5c-84c9-546b4603e3d5
GITHUB_REF              refs/heads/main
GITHUB_REF_NAME         main
GITHUB_REF_PROTECTED    false
GITHUB_REF_TYPE         branch
GITHUB_REPOSITORY       pharmaR/pharmapkgs
GITHUB_REPOSITORY_ID    798326913
GITHUB_REPOSITORY_OWNER
                        pharmaR
GITHUB_REPOSITORY_OWNER_ID
                        42115094
GITHUB_RETENTION_DAYS   90
GITHUB_RUN_ATTEMPT      1
GITHUB_RUN_ID           13382492418
GITHUB_RUN_NUMBER       95
GITHUB_SERVER_URL       https://github.com
GITHUB_SHA              157fff498035c254c88cbf9e2cfd3aeb384ab8f5
GITHUB_STATE            /home/runner/work/_temp/_runner_file_commands/save_state_b4db8720-2381-4f5c-84c9-546b4603e3d5
GITHUB_STEP_SUMMARY     /home/runner/work/_temp/_runner_file_commands/step_summary_b4db8720-2381-4f5c-84c9-546b4603e3d5
GITHUB_TRIGGERING_ACTOR
                        llrs-roche
GITHUB_WORKFLOW         Update package repositories
GITHUB_WORKFLOW_REF     pharmaR/pharmapkgs/.github/workflows/update-repos.yml@refs/heads/main
GITHUB_WORKFLOW_SHA     157fff498035c254c88cbf9e2cfd3aeb384ab8f5
GITHUB_WORKSPACE        /home/runner/work/pharmapkgs/pharmapkgs
GOROOT_1_21_X64         /opt/hostedtoolcache/go/1.21.13/x64
GOROOT_1_22_X64         /opt/hostedtoolcache/go/1.22.12/x64
GOROOT_1_23_X64         /opt/hostedtoolcache/go/1.23.6/x64
GRADLE_HOME             /usr/share/gradle-8.12.1
HOME                    /home/runner
HOMEBREW_CLEANUP_PERIODIC_FULL_DAYS
                        3650
HOMEBREW_NO_AUTO_UPDATE
                        1
ImageOS                 ubuntu24
ImageVersion            20250209.1.0
INVOCATION_ID           bc1187a89ae54556a37eda746d0322c1
JAVA_HOME               /usr/lib/jvm/temurin-17-jdk-amd64
JAVA_HOME_11_X64        /usr/lib/jvm/temurin-11-jdk-amd64
JAVA_HOME_17_X64        /usr/lib/jvm/temurin-17-jdk-amd64
JAVA_HOME_21_X64        /usr/lib/jvm/temurin-21-jdk-amd64
JAVA_HOME_8_X64         /usr/lib/jvm/temurin-8-jdk-amd64
JOURNAL_STREAM          8:8324
LANG                    C.UTF-8
LD_LIBRARY_PATH         /opt/R/4.4.2/lib/R/lib:/usr/local/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/temurin-17-jdk-amd64/lib/server:/opt/R/4.4.2/lib/R/lib:/usr/local/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/temurin-17-jdk-amd64/lib/server
LN_S                    ln -s
LOGGER_LOG_LEVEL        DEBUG
MAKE                    make
MEMORY_PRESSURE_WATCH   /sys/fs/cgroup/system.slice/runner-provisioner.service/memory.pressure
MEMORY_PRESSURE_WRITE   c29tZSAyMDAwMDAgMjAwMDAwMAA=
NOT_CRAN                true
NVM_DIR                 /home/runner/.nvm
PAGER                   /usr/bin/pager
PATH                    /snap/bin:/home/runner/.local/bin:/opt/pipx_bin:/home/runner/.cargo/bin:/home/runner/.config/composer/vendor/bin:/usr/local/.ghcup/bin:/home/runner/.dotnet/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
PERFLOG_LOCATION_SETTING
                        RUNNER_PERFLOG
PHARMAPKGS_EXCLUDED_METRICS
                        assess_covr_coverage,assess_r_cmd_check
PHARMAPKGS_LIMIT        1000
PHARMAPKGS_PLATFORM     ubuntu-22.04
PHARMAPKGS_R_VERSION    4.4
PHARMAPKGS_REMOTE_REPO
                        https://cloud.r-project.org/
PIPX_BIN_DIR            /opt/pipx_bin
PIPX_HOME               /opt/pipx
PKGCACHE_HTTP_VERSION   2
PKGLOAD_PARENT_TEMPDIR
                        /tmp/RtmpqWpBI2
POWERSHELL_DISTRIBUTION_CHANNEL
                        GitHub-Actions-ubuntu24
PROCESSX_PS1bb443bf066a_1739853779
                        YES
PWD                     /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_BIN_PATH         /opt/quarto/bin
QUARTO_DENO             /opt/quarto/bin/tools/x86_64/deno
QUARTO_DOCUMENT_PATH    /home/runner/work/pharmapkgs/pharmapkgs/inst/report
QUARTO_PROFILE          
QUARTO_PROJECT_DIR      /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_PROJECT_ROOT     /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_ROOT             /
QUARTO_SHARE_PATH       /opt/quarto/share
R_ARCH                  
R_BROWSER               xdg-open
R_BZIPCMD               /usr/bin/bzip2
R_DOC_DIR               /opt/R/4.4.2/lib/R/doc
R_GZIPCMD               /usr/bin/gzip
R_HOME                  /opt/R/4.4.2/lib/R
R_INCLUDE_DIR           /opt/R/4.4.2/lib/R/include
R_LIB_FOR_PAK           /opt/R/4.4.2/lib/R/site-library
R_LIBS_SITE             /opt/R/4.4.2/lib/R/site-library
R_LIBS_USER             /home/runner/work/_temp/Library
R_PAPERSIZE             letter
R_PAPERSIZE_USER        letter
R_PDFVIEWER             /usr/bin/xdg-open
R_PLATFORM              x86_64-pc-linux-gnu
R_PRINTCMD              /usr/bin/lpr
R_RD4PDF                times,inconsolata,hyper
R_SESSION_TMPDIR        /tmp/RtmpGA9H1l
R_SHARE_DIR             /opt/R/4.4.2/lib/R/share
R_STRIP_SHARED_LIB      strip --strip-unneeded
R_STRIP_STATIC_LIB      strip --strip-debug
R_TEXI2DVICMD           /usr/bin/texi2dvi
R_UNZIPCMD              /usr/bin/unzip
R_ZIPCMD                /usr/bin/zip
RUNNER_ARCH             X64
RUNNER_ENVIRONMENT      github-hosted
RUNNER_NAME             GitHub Actions 17
RUNNER_OS               Linux
RUNNER_PERFLOG          /home/runner/perflog
RUNNER_TEMP             /home/runner/work/_temp
RUNNER_TOOL_CACHE       /opt/hostedtoolcache
RUNNER_TRACKING_ID      github_c8a03d70-50b4-4e41-a95e-f8c1a5765170
RUNNER_USER             runner
RUNNER_WORKSPACE        /home/runner/work/pharmapkgs
SED                     /usr/bin/sed
SELENIUM_JAR_PATH       /usr/share/java/selenium-server.jar
SGX_AESM_ADDR           1
SHLVL                   1
STATS_D                 true
STATS_D_D               true
STATS_D_TC              true
STATS_EXT               true
STATS_EXTP              https://provjobdprod.z13.web.core.windows.net/settings/provjobdsettings-latest/provjobd.data
STATS_PIP               false
STATS_RDCL              true
STATS_TRP               true
STATS_UE                true
STATS_V3PS              true
STATS_VMD               true
STATS_VMFE              true
SWIFT_PATH              /usr/share/swift/usr/bin
SYSTEMD_EXEC_PID        830
TAR                     /usr/bin/tar
TZ                      UTC
USER                    runner
VCPKG_INSTALLATION_ROOT
                        /usr/local/share/vcpkg
XDG_CONFIG_HOME         /home/runner/.config
XDG_RUNTIME_DIR         /run/user/1001

These are the options set to generate the report:

$add.smooth
[1] TRUE

$bitmapType
[1] "cairo"

$browser
[1] "xdg-open"

$browserNLdisabled
[1] FALSE

$callr.condition_handler_cli_message
function (msg) 
{
    custom_handler <- getOption("cli.default_handler")
    if (is.function(custom_handler)) {
        custom_handler(msg)
    }
    else {
        cli_server_default(msg)
    }
}
<bytecode: 0x558fa08bf910>
<environment: namespace:cli>

$catch.script.errors
[1] FALSE

$CBoundsCheck
[1] FALSE

$check.bounds
[1] FALSE

$citation.bibtex.max
[1] 1

$continue
[1] "+ "

$contrasts
        unordered           ordered 
"contr.treatment"      "contr.poly" 

$covr.record_tests
[1] TRUE

$defaultPackages
[1] "datasets"  "utils"     "grDevices" "graphics"  "stats"     "methods"  

$demo.ask
[1] "default"

$deparse.cutoff
[1] 60

$device
function (width = 7, height = 7, ...) 
{
    grDevices::pdf(NULL, width, height, ...)
}
<bytecode: 0x558f9ff5c930>
<environment: namespace:knitr>

$device.ask.default
[1] FALSE

$digits
[1] 7

$dvipscmd
[1] "dvips"

$echo
[1] FALSE

$editor
[1] "vi"

$encoding
[1] "native.enc"

$example.ask
[1] "default"

$expressions
[1] 5000

$help.search.types
[1] "vignette" "demo"     "help"    

$help.try.all.packages
[1] FALSE

$htmltools.preserve.raw
[1] TRUE

$HTTPUserAgent
[1] "R/4.4.2 R (4.4.2 x86_64-pc-linux-gnu x86_64 linux-gnu) on GitHub Actions"

$internet.info
[1] 2

$keep.parse.data
[1] TRUE

$keep.parse.data.pkgs
[1] FALSE

$keep.source
[1] FALSE

$keep.source.pkgs
[1] FALSE

$knitr.in.progress
[1] TRUE

$locatorBell
[1] TRUE

$mailer
[1] "mailto"

$matprod
[1] "default"

$max.contour.segments
[1] 25000

$max.print
[1] 99999

$menu.graphics
[1] TRUE

$na.action
[1] "na.omit"

$Ncpus
[1] 1

$nwarnings
[1] 50

$OutDec
[1] "."

$pager
[1] "/opt/R/4.4.2/lib/R/bin/pager"

$papersize
[1] "letter"

$PCRE_limit_recursion
[1] NA

$PCRE_study
[1] FALSE

$PCRE_use_JIT
[1] TRUE

$pdfviewer
[1] "/usr/bin/xdg-open"

$pkgType
[1] "source"

$printcmd
[1] "/usr/bin/lpr"

$prompt
[1] "> "

$repos
                      CRAN 
"https://cran.rstudio.com" 

$rl_word_breaks
[1] " \t\n\"\\'`><=%;,|&{()}"

$rlang_trace_top_env
<environment: R_GlobalEnv>

$scipen
[1] 0

$show.coef.Pvalues
[1] TRUE

$show.error.messages
[1] TRUE

$show.signif.stars
[1] TRUE

$showErrorCalls
[1] TRUE

$showNCalls
[1] 50

$showWarnCalls
[1] FALSE

$str
$str$strict.width
[1] "no"

$str$digits.d
[1] 3

$str$vec.len
[1] 4

$str$list.len
[1] 99

$str$deparse.lines
NULL

$str$drop.deparse.attr
[1] TRUE

$str$formatNum
function (x, ...) 
format(x, trim = TRUE, drop0trailing = TRUE, ...)
<environment: 0x558f9fd97520>


$str.dendrogram.last
[1] "`"

$texi2dvi
[1] "/usr/bin/texi2dvi"

$tikzMetricsDictionary
[1] "validation_report_drake_v7.13.11-tikzDictionary"

$timeout
[1] 60

$try.outFile
A connection with                    
description ""      
class       "file"  
mode        "w+b"   
text        "binary"
opened      "opened"
can read    "yes"   
can write   "yes"   

$ts.eps
[1] 1e-05

$ts.S.compat
[1] FALSE

$unzip
[1] "/usr/bin/unzip"

$useFancyQuotes
[1] FALSE

$verbose
[1] FALSE

$warn
[1] 0

$warning.length
[1] 1000

$warnPartialMatchArgs
[1] FALSE

$warnPartialMatchAttr
[1] FALSE

$warnPartialMatchDollar
[1] FALSE

$width
[1] 80