Validation Report - dm@1.0.11
Context
This report is fully automated and builds on rhub/ref-image image. Documents the installation of this package on an open source R environment, focusing on:
- Installation environment description
- Testing coverage
It is limited to assess whether unit tests and documentation are present and can execute without error. An assessment would be required that the tests and documentation are meaningful.
Package dm
Metric based risk assessment
The following metrics are derived from the riskmetric R package.
| has_news | 1 |
| news_current | TRUE |
| exported_namespace | 194 |
| has_vignettes | 33 |
| export_help | 194 |
| has_website | TRUE |
| has_maintainer | Kirill Müller kirill@cynkra.com |
| bugs_status | subscript out of bounds |
| has_source_control | https://github.com/cynkra/dm |
| has_bug_reports_url | 1 |
| downloads_1yr | 31616 |
| reverse_dependencies | 12 |
| has_examples | 0.9868421 |
| dependencies | 14 |
| license | MIT + file LICENSE |
Package general assessment: Coverage, check results, size, download the last year, reverse dependencies and number of dependencies.
Dependencies
Overall the package has these dependencies:
| package | type | |
|---|---|---|
| 1 | backports | Imports |
| 2 | cli (>= 2.2.0) | Imports |
| 3 | dplyr (>= 1.1.0) | Imports |
| 4 | glue | Imports |
| 5 | igraph | Imports |
| 6 | lifecycle (>= 1.0.3) | Imports |
| 7 | memoise | Imports |
| 8 | methods | Imports |
| 9 | purrr (>= 1.0.0) | Imports |
| 10 | rlang (>= 1.0.2) | Imports |
| 11 | tibble (>= 3.0.0) | Imports |
| 12 | tidyr (>= 1.0.0) | Imports |
| 13 | tidyselect (>= 1.2.0) | Imports |
| 14 | vctrs (>= 0.3.2) | Imports |
Package dependencies
Reverse dependencies
Overall the package has 12 reverse dependencies:
constructive, editbl, fishdata, geogenr, inldata, mlms, profile, robotoolbox, rolap, srppp, starwarsdb, when
Namespace
Overall the package has 194 exported objects. 193 are documented:
%>% anti_join
FALSE TRUE
arrange as_dm
TRUE TRUE
cdm_add_fk cdm_add_pk
TRUE TRUE
cdm_add_tbl cdm_apply_filters
TRUE TRUE
cdm_apply_filters_to_tbl cdm_check_constraints
TRUE TRUE
cdm_copy_to cdm_disambiguate_cols
TRUE TRUE
cdm_draw cdm_enum_fk_candidates
TRUE TRUE
cdm_enum_pk_candidates cdm_filter
TRUE TRUE
cdm_flatten_to_tbl cdm_get_all_fks
TRUE TRUE
cdm_get_all_pks cdm_get_available_colors
TRUE TRUE
cdm_get_colors cdm_get_con
TRUE TRUE
cdm_get_filter cdm_get_fk
TRUE TRUE
cdm_get_pk cdm_get_referencing_tables
TRUE TRUE
cdm_get_src cdm_get_tables
TRUE TRUE
cdm_has_fk cdm_has_pk
TRUE TRUE
cdm_insert_zoomed_tbl cdm_is_referenced
TRUE TRUE
cdm_join_to_tbl cdm_learn_from_db
TRUE TRUE
cdm_nrow cdm_nycflights13
TRUE TRUE
cdm_paste cdm_rename
TRUE TRUE
cdm_rename_tbl cdm_rm_fk
TRUE TRUE
cdm_rm_pk cdm_rm_tbl
TRUE TRUE
cdm_select cdm_select_tbl
TRUE TRUE
cdm_set_colors cdm_squash_to_tbl
TRUE TRUE
cdm_update_zoomed_tbl cdm_zoom_out
TRUE TRUE
cdm_zoom_to_tbl check_cardinality
TRUE TRUE
check_cardinality_0_1 check_cardinality_0_n
TRUE TRUE
check_cardinality_1_1 check_cardinality_1_n
TRUE TRUE
check_if_subset check_key
TRUE TRUE
check_set_equality check_subset
TRUE TRUE
collect compute
TRUE TRUE
copy_dm_to copy_to
TRUE TRUE
db_schema_create db_schema_drop
TRUE TRUE
db_schema_exists db_schema_list
TRUE TRUE
decompose_table dm
TRUE TRUE
dm_add_fk dm_add_pk
TRUE TRUE
dm_add_tbl dm_add_uk
TRUE TRUE
dm_apply_filters dm_apply_filters_to_tbl
TRUE TRUE
dm_bind dm_ddl_post
TRUE TRUE
dm_ddl_pre dm_deconstruct
TRUE TRUE
dm_disambiguate_cols dm_discard_zoomed
TRUE TRUE
dm_dml_load dm_draw
TRUE TRUE
dm_enum_fk_candidates dm_enum_pk_candidates
TRUE TRUE
dm_examine_cardinalities dm_examine_constraints
TRUE TRUE
dm_filter dm_financial
TRUE TRUE
dm_financial_sqlite dm_flatten_to_tbl
TRUE TRUE
dm_from_con dm_from_src
TRUE TRUE
dm_get_all_fks dm_get_all_pks
TRUE TRUE
dm_get_all_uks dm_get_available_colors
TRUE TRUE
dm_get_colors dm_get_con
TRUE TRUE
dm_get_filters dm_get_fk
TRUE TRUE
dm_get_pk dm_get_referencing_tables
TRUE TRUE
dm_get_src dm_get_table_description
TRUE TRUE
dm_get_tables dm_gui
TRUE TRUE
dm_has_fk dm_has_pk
TRUE TRUE
dm_insert_zoomed dm_is_referenced
TRUE TRUE
dm_join_to_tbl dm_mutate_tbl
TRUE TRUE
dm_nest_tbl dm_nrow
TRUE TRUE
dm_nycflights13 dm_pack_tbl
TRUE TRUE
dm_paste dm_pixarfilms
TRUE TRUE
dm_ptype dm_rename
TRUE TRUE
dm_rename_tbl dm_reset_table_description
TRUE TRUE
dm_rm_fk dm_rm_pk
TRUE TRUE
dm_rm_tbl dm_rm_uk
TRUE TRUE
dm_rows_append dm_rows_delete
TRUE TRUE
dm_rows_insert dm_rows_patch
TRUE TRUE
dm_rows_truncate dm_rows_update
TRUE TRUE
dm_rows_upsert dm_select
TRUE TRUE
dm_select_tbl dm_set_colors
TRUE TRUE
dm_set_table_description dm_sql
TRUE TRUE
dm_squash_to_tbl dm_unnest_tbl
TRUE TRUE
dm_unpack_tbl dm_unwrap_tbl
TRUE TRUE
dm_update_zoomed dm_validate
TRUE TRUE
dm_wrap_tbl dm_zoom_to
TRUE TRUE
enum_fk_candidates enum_pk_candidates
TRUE TRUE
examine_cardinality filter
TRUE TRUE
full_join glimpse
TRUE TRUE
group_by inner_join
TRUE TRUE
is_dm json_nest
TRUE TRUE
json_nest_join json_pack
TRUE TRUE
json_pack_join json_unnest
TRUE TRUE
json_unpack left_join
TRUE TRUE
mutate new_dm
TRUE TRUE
pack_join pull_tbl
TRUE TRUE
rename reunite_parent_child
TRUE TRUE
reunite_parent_child_from_list right_join
TRUE TRUE
rows_append rows_delete
TRUE TRUE
rows_insert rows_patch
TRUE TRUE
rows_truncate rows_update
TRUE TRUE
rows_upsert select
TRUE TRUE
semi_join separate
TRUE TRUE
sql_rows_truncate sql_schema_create
TRUE TRUE
sql_schema_drop sql_schema_exists
TRUE TRUE
sql_schema_list src_tbls
TRUE TRUE
summarise summarize
TRUE TRUE
tbl tibble
TRUE TRUE
transmute ungroup
TRUE TRUE
unite validate_dm
TRUE TRUE Examples
There are 75 help pages with examples, from 76 (98.68 %).
NEWS
The package has NEWS file and it is current.
License
The package uses .
Installation environment
System Info
| Field | Value |
|---|---|
| Image | rhub/ref-image |
| OS | Ubuntu 24.04.1 LTS |
| Platform | x86_64-pc-linux-gnu |
| System | x86_64, linux-gnu |
| Execution Time | 2025-02-18 04:26:33 UTC |
System information. Table about the system used to check the package.
R Session Info
Information about the R environment and capabilities:
R version 4.4.2 (2024-10-31)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 24.04.1 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so; LAPACK version 3.12.0
locale:
[1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8
[4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8
[7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C
time zone: UTC
tzcode source: system (glibc)
attached base packages:
[1] tools stats graphics grDevices utils datasets methods
[8] base
loaded via a namespace (and not attached):
[1] riskreports_0.0.0.9003 compiler_4.4.2 fastmap_1.2.0
[4] cli_3.6.4 htmltools_0.5.8.1 yaml_2.3.10
[7] rmarkdown_2.29 knitr_1.49 jsonlite_1.8.9
[10] xfun_0.50 digest_0.6.37 rlang_1.1.5
[13] evaluate_1.0.3 Platform used:
OS.type file.sep dynlib.ext GUI endian pkgType path.sep
"unix" "/" ".so" "X11" "little" "source" ":"
r_arch
"" R’s capabilities:
jpeg png tiff tcltk X11 aqua
TRUE TRUE TRUE TRUE FALSE FALSE
http/ftp sockets libxml fifo cledit iconv
TRUE TRUE FALSE TRUE FALSE TRUE
NLS Rprof profmem cairo ICU long.double
TRUE TRUE TRUE TRUE TRUE TRUE
libcurl
TRUE External software:
zlib
"1.3"
bzlib
"1.0.8, 13-Jul-2019"
xz
"5.4.5"
libdeflate
"1.19"
PCRE
"10.42 2022-12-11"
ICU
"74.2"
TRE
"TRE 0.8.0 R_fixes (BSD)"
iconv
"glibc 2.39"
readline
"8.2"
BLAS
"/usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3" Graphics external software:
cairo cairoFT pango
"1.18.0" "" "1.52.1"
libpng jpeg libtiff
"1.6.43" "8.0" "LIBTIFF, Version 4.5.1" Numerical characteristics of the machine:
double.eps double.neg.eps double.xmin
2.220446e-16 1.110223e-16 2.225074e-308
double.xmax double.base double.digits
1.797693e+308 2.000000e+00 5.300000e+01
double.rounding double.guard double.ulp.digits
5.000000e+00 0.000000e+00 -5.200000e+01
double.neg.ulp.digits double.exponent double.min.exp
-5.300000e+01 1.100000e+01 -1.022000e+03
double.max.exp integer.max sizeof.long
1.024000e+03 2.147484e+09 8.000000e+00
sizeof.longlong sizeof.longdouble sizeof.pointer
8.000000e+00 1.600000e+01 8.000000e+00
sizeof.time_t longdouble.eps longdouble.neg.eps
8.000000e+00 1.084202e-19 5.421011e-20
longdouble.digits longdouble.rounding longdouble.guard
6.400000e+01 5.000000e+00 0.000000e+00
longdouble.ulp.digits longdouble.neg.ulp.digits longdouble.exponent
-6.300000e+01 -6.400000e+01 1.500000e+01
longdouble.min.exp longdouble.max.exp
-1.638200e+04 1.638400e+04 Random number generation process:
[1] "Mersenne-Twister" "Inversion" "Rejection" Information about the environment
Environmental and options variables affect how package checks and software in it might behave. Here is the environmental variables when running this report
_R_CHECK_SYSTEM_CLOCK_
FALSE
ACCEPT_EULA Y
ACTIONS_RUNNER_ACTION_ARCHIVE_CACHE
/opt/actionarchivecache
AGENT_TOOLSDIRECTORY /opt/hostedtoolcache
ANDROID_HOME /usr/local/lib/android/sdk
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ANDROID_NDK_LATEST_HOME
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ANDROID_NDK_ROOT /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_SDK_ROOT /usr/local/lib/android/sdk
ANT_HOME /usr/share/ant
AZURE_EXTENSION_DIR /opt/az/azcliextensions
BOOTSTRAP_HASKELL_NONINTERACTIVE
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BUNDLE_EXT linux-amd64.deb
CHROME_BIN /usr/bin/google-chrome
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CI true
CONDA /usr/share/miniconda
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DENO_TLS_CA_STORE system,mozilla
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DOTNET_MULTILEVEL_LOOKUP
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GITHUB_ACTION __run
GITHUB_ACTION_REF
GITHUB_ACTION_REPOSITORY
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GITHUB_HEAD_REF
GITHUB_JOB main
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GITHUB_PATH /home/runner/work/_temp/_runner_file_commands/add_path_b4db8720-2381-4f5c-84c9-546b4603e3d5
GITHUB_REF refs/heads/main
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GITHUB_REF_TYPE branch
GITHUB_REPOSITORY pharmaR/pharmapkgs
GITHUB_REPOSITORY_ID 798326913
GITHUB_REPOSITORY_OWNER
pharmaR
GITHUB_REPOSITORY_OWNER_ID
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GITHUB_RETENTION_DAYS 90
GITHUB_RUN_ATTEMPT 1
GITHUB_RUN_ID 13382492418
GITHUB_RUN_NUMBER 95
GITHUB_SERVER_URL https://github.com
GITHUB_SHA 157fff498035c254c88cbf9e2cfd3aeb384ab8f5
GITHUB_STATE /home/runner/work/_temp/_runner_file_commands/save_state_b4db8720-2381-4f5c-84c9-546b4603e3d5
GITHUB_STEP_SUMMARY /home/runner/work/_temp/_runner_file_commands/step_summary_b4db8720-2381-4f5c-84c9-546b4603e3d5
GITHUB_TRIGGERING_ACTOR
llrs-roche
GITHUB_WORKFLOW Update package repositories
GITHUB_WORKFLOW_REF pharmaR/pharmapkgs/.github/workflows/update-repos.yml@refs/heads/main
GITHUB_WORKFLOW_SHA 157fff498035c254c88cbf9e2cfd3aeb384ab8f5
GITHUB_WORKSPACE /home/runner/work/pharmapkgs/pharmapkgs
GOROOT_1_21_X64 /opt/hostedtoolcache/go/1.21.13/x64
GOROOT_1_22_X64 /opt/hostedtoolcache/go/1.22.12/x64
GOROOT_1_23_X64 /opt/hostedtoolcache/go/1.23.6/x64
GRADLE_HOME /usr/share/gradle-8.12.1
HOME /home/runner
HOMEBREW_CLEANUP_PERIODIC_FULL_DAYS
3650
HOMEBREW_NO_AUTO_UPDATE
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ImageOS ubuntu24
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INVOCATION_ID bc1187a89ae54556a37eda746d0322c1
JAVA_HOME /usr/lib/jvm/temurin-17-jdk-amd64
JAVA_HOME_11_X64 /usr/lib/jvm/temurin-11-jdk-amd64
JAVA_HOME_17_X64 /usr/lib/jvm/temurin-17-jdk-amd64
JAVA_HOME_21_X64 /usr/lib/jvm/temurin-21-jdk-amd64
JAVA_HOME_8_X64 /usr/lib/jvm/temurin-8-jdk-amd64
JOURNAL_STREAM 8:8324
LANG C.UTF-8
LD_LIBRARY_PATH /opt/R/4.4.2/lib/R/lib:/usr/local/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/temurin-17-jdk-amd64/lib/server:/opt/R/4.4.2/lib/R/lib:/usr/local/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/temurin-17-jdk-amd64/lib/server
LN_S ln -s
LOGGER_LOG_LEVEL DEBUG
MAKE make
MEMORY_PRESSURE_WATCH /sys/fs/cgroup/system.slice/runner-provisioner.service/memory.pressure
MEMORY_PRESSURE_WRITE c29tZSAyMDAwMDAgMjAwMDAwMAA=
NOT_CRAN true
NVM_DIR /home/runner/.nvm
PAGER /usr/bin/pager
PATH /snap/bin:/home/runner/.local/bin:/opt/pipx_bin:/home/runner/.cargo/bin:/home/runner/.config/composer/vendor/bin:/usr/local/.ghcup/bin:/home/runner/.dotnet/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
PERFLOG_LOCATION_SETTING
RUNNER_PERFLOG
PHARMAPKGS_EXCLUDED_METRICS
assess_covr_coverage,assess_r_cmd_check
PHARMAPKGS_LIMIT 1000
PHARMAPKGS_PLATFORM ubuntu-22.04
PHARMAPKGS_R_VERSION 4.4
PHARMAPKGS_REMOTE_REPO
https://cloud.r-project.org/
PIPX_BIN_DIR /opt/pipx_bin
PIPX_HOME /opt/pipx
PKGCACHE_HTTP_VERSION 2
PKGLOAD_PARENT_TEMPDIR
/tmp/RtmpqWpBI2
POWERSHELL_DISTRIBUTION_CHANNEL
GitHub-Actions-ubuntu24
PROCESSX_PS1bb47fb5cf18_1739852787
YES
PWD /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_BIN_PATH /opt/quarto/bin
QUARTO_DENO /opt/quarto/bin/tools/x86_64/deno
QUARTO_DOCUMENT_PATH /home/runner/work/pharmapkgs/pharmapkgs/inst/report
QUARTO_PROFILE
QUARTO_PROJECT_DIR /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_PROJECT_ROOT /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_ROOT /
QUARTO_SHARE_PATH /opt/quarto/share
R_ARCH
R_BROWSER xdg-open
R_BZIPCMD /usr/bin/bzip2
R_DOC_DIR /opt/R/4.4.2/lib/R/doc
R_GZIPCMD /usr/bin/gzip
R_HOME /opt/R/4.4.2/lib/R
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R_PAPERSIZE letter
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R_PDFVIEWER /usr/bin/xdg-open
R_PLATFORM x86_64-pc-linux-gnu
R_PRINTCMD /usr/bin/lpr
R_RD4PDF times,inconsolata,hyper
R_SESSION_TMPDIR /tmp/Rtmpj9mDGD
R_SHARE_DIR /opt/R/4.4.2/lib/R/share
R_STRIP_SHARED_LIB strip --strip-unneeded
R_STRIP_STATIC_LIB strip --strip-debug
R_TEXI2DVICMD /usr/bin/texi2dvi
R_UNZIPCMD /usr/bin/unzip
R_ZIPCMD /usr/bin/zip
RUNNER_ARCH X64
RUNNER_ENVIRONMENT github-hosted
RUNNER_NAME GitHub Actions 17
RUNNER_OS Linux
RUNNER_PERFLOG /home/runner/perflog
RUNNER_TEMP /home/runner/work/_temp
RUNNER_TOOL_CACHE /opt/hostedtoolcache
RUNNER_TRACKING_ID github_c8a03d70-50b4-4e41-a95e-f8c1a5765170
RUNNER_USER runner
RUNNER_WORKSPACE /home/runner/work/pharmapkgs
SED /usr/bin/sed
SELENIUM_JAR_PATH /usr/share/java/selenium-server.jar
SGX_AESM_ADDR 1
SHLVL 1
STATS_D true
STATS_D_D true
STATS_D_TC true
STATS_EXT true
STATS_EXTP https://provjobdprod.z13.web.core.windows.net/settings/provjobdsettings-latest/provjobd.data
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STATS_TRP true
STATS_UE true
STATS_V3PS true
STATS_VMD true
STATS_VMFE true
SWIFT_PATH /usr/share/swift/usr/bin
SYSTEMD_EXEC_PID 830
TAR /usr/bin/tar
TZ UTC
USER runner
VCPKG_INSTALLATION_ROOT
/usr/local/share/vcpkg
XDG_CONFIG_HOME /home/runner/.config
XDG_RUNTIME_DIR /run/user/1001These are the options set to generate the report:
$add.smooth
[1] TRUE
$bitmapType
[1] "cairo"
$browser
[1] "xdg-open"
$browserNLdisabled
[1] FALSE
$callr.condition_handler_cli_message
function (msg)
{
custom_handler <- getOption("cli.default_handler")
if (is.function(custom_handler)) {
custom_handler(msg)
}
else {
cli_server_default(msg)
}
}
<bytecode: 0x56082869d910>
<environment: namespace:cli>
$catch.script.errors
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$CBoundsCheck
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$check.bounds
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$citation.bibtex.max
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$continue
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$contrasts
unordered ordered
"contr.treatment" "contr.poly"
$covr.record_tests
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$defaultPackages
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$demo.ask
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$device
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{
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<bytecode: 0x560827d410d8>
<environment: namespace:knitr>
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$digits
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$echo
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$editor
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$encoding
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$example.ask
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$expressions
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$keep.parse.data.pkgs
[1] FALSE
$keep.source
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$keep.source.pkgs
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$knitr.in.progress
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$locatorBell
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$mailer
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$matprod
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$max.contour.segments
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$max.print
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$na.action
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$Ncpus
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$OutDec
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$papersize
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$pdfviewer
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$pkgType
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$printcmd
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$prompt
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$repos
CRAN
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$rl_word_breaks
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$rlang_trace_top_env
<environment: R_GlobalEnv>
$scipen
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$show.coef.Pvalues
[1] TRUE
$show.error.messages
[1] TRUE
$show.signif.stars
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$showErrorCalls
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$showNCalls
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$str
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$str$digits.d
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$str$vec.len
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$str$list.len
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$str$deparse.lines
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$str$drop.deparse.attr
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$str$formatNum
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format(x, trim = TRUE, drop0trailing = TRUE, ...)
<environment: 0x560827b75520>
$str.dendrogram.last
[1] "`"
$texi2dvi
[1] "/usr/bin/texi2dvi"
$tikzMetricsDictionary
[1] "validation_report_dm_v1.0.11-tikzDictionary"
$timeout
[1] 60
$try.outFile
A connection with
description ""
class "file"
mode "w+b"
text "binary"
opened "opened"
can read "yes"
can write "yes"
$ts.eps
[1] 1e-05
$ts.S.compat
[1] FALSE
$unzip
[1] "/usr/bin/unzip"
$useFancyQuotes
[1] FALSE
$verbose
[1] FALSE
$warn
[1] 0
$warning.length
[1] 1000
$warnPartialMatchArgs
[1] FALSE
$warnPartialMatchAttr
[1] FALSE
$warnPartialMatchDollar
[1] FALSE
$width
[1] 80