Validation Report - distantia@2.0.2
Context
This report is fully automated and builds on rhub/ref-image image. Documents the installation of this package on an open source R environment, focusing on:
- Installation environment description
- Testing coverage
It is limited to assess whether unit tests and documentation are present and can execute without error. An assessment would be required that the tests and documentation are meaningful.
Package distantia
Metric based risk assessment
The following metrics are derived from the riskmetric R package.
| has_news | 1 |
| news_current | TRUE |
| exported_namespace | 180 |
| has_vignettes | 0 |
| export_help | 180 |
| has_website | TRUE |
| has_maintainer | Blas M. Benito blasbenito@gmail.com |
| bugs_status | subscript out of bounds |
| has_bug_reports_url | 1 |
| downloads_1yr | 7002 |
| reverse_dependencies | 0 |
| has_examples | 1 |
| dependencies | 8 |
| license | MIT + file LICENSE |
Package general assessment: Coverage, check results, size, download the last year, reverse dependencies and number of dependencies.
Dependencies
Overall the package has these dependencies:
| package | type | |
|---|---|---|
| 1 | doFuture | Depends |
| 2 | Rcpp | Imports |
| 3 | zoo | Imports |
| 4 | foreach | Imports |
| 5 | future.apply | Imports |
| 6 | lubridate | Imports |
| 7 | progressr | Imports |
| 8 | Rcpp | LinkingTo |
Package dependencies
Reverse dependencies
Overall the package has 0 reverse dependencies:
Namespace
Overall the package has 180 exported objects. 180 are documented:
auto_distance_cpp auto_sum_cpp
TRUE TRUE
auto_sum_full_cpp auto_sum_path_cpp
TRUE TRUE
color_continuous color_discrete
TRUE TRUE
cost_matrix_diagonal_cpp cost_matrix_diagonal_weighted_cpp
TRUE TRUE
cost_matrix_orthogonal_cpp cost_path_cpp
TRUE TRUE
cost_path_diagonal_bandwidth_cpp cost_path_diagonal_cpp
TRUE TRUE
cost_path_orthogonal_bandwidth_cpp cost_path_orthogonal_cpp
TRUE TRUE
cost_path_slotting_cpp cost_path_sum_cpp
TRUE TRUE
cost_path_trim_cpp distance
TRUE TRUE
distance_bray_curtis_cpp distance_canberra_cpp
TRUE TRUE
distance_chebyshev_cpp distance_chi_cpp
TRUE TRUE
distance_cosine_cpp distance_euclidean_cpp
TRUE TRUE
distance_hamming_cpp distance_hellinger_cpp
TRUE TRUE
distance_jaccard_cpp distance_ls_cpp
TRUE TRUE
distance_manhattan_cpp distance_matrix
TRUE TRUE
distance_matrix_cpp distance_russelrao_cpp
TRUE TRUE
distance_sorensen_cpp distantia
TRUE TRUE
distantia_aggregate distantia_boxplot
TRUE TRUE
distantia_cluster_hclust distantia_cluster_kmeans
TRUE TRUE
distantia_dtw distantia_dtw_plot
TRUE TRUE
distantia_ls distantia_matrix
TRUE TRUE
distantia_model_frame distantia_spatial
TRUE TRUE
distantia_stats distantia_time_delay
TRUE TRUE
f_binary f_clr
TRUE TRUE
f_detrend_difference f_detrend_linear
TRUE TRUE
f_detrend_poly f_hellinger
TRUE TRUE
f_list f_log
TRUE TRUE
f_percent f_proportion
TRUE TRUE
f_proportion_sqrt f_rescale_global
TRUE TRUE
f_rescale_local f_scale_global
TRUE TRUE
f_scale_local f_trend_linear
TRUE TRUE
f_trend_poly importance_dtw_cpp
TRUE TRUE
importance_dtw_legacy_cpp importance_ls_cpp
TRUE TRUE
momentum momentum_aggregate
TRUE TRUE
momentum_boxplot momentum_dtw
TRUE TRUE
momentum_ls momentum_model_frame
TRUE TRUE
momentum_spatial momentum_stats
TRUE TRUE
momentum_to_wide permute_free_by_row_cpp
TRUE TRUE
permute_free_cpp permute_restricted_by_row_cpp
TRUE TRUE
permute_restricted_cpp psi_auto_distance
TRUE TRUE
psi_auto_sum psi_cost_matrix
TRUE TRUE
psi_cost_path psi_cost_path_sum
TRUE TRUE
psi_distance_lock_step psi_distance_matrix
TRUE TRUE
psi_dtw_cpp psi_equation
TRUE TRUE
psi_equation_cpp psi_ls_cpp
TRUE TRUE
psi_null_dtw_cpp psi_null_ls_cpp
TRUE TRUE
subset_matrix_by_rows_cpp tsl_aggregate
TRUE TRUE
tsl_burst tsl_colnames_clean
TRUE TRUE
tsl_colnames_get tsl_colnames_prefix
TRUE TRUE
tsl_colnames_set tsl_colnames_suffix
TRUE TRUE
tsl_count_NA tsl_diagnose
TRUE TRUE
tsl_handle_NA tsl_Inf_to_NA
TRUE TRUE
tsl_init tsl_initialize
TRUE TRUE
tsl_join tsl_names_clean
TRUE TRUE
tsl_names_get tsl_names_set
TRUE TRUE
tsl_names_test tsl_NaN_to_NA
TRUE TRUE
tsl_ncol tsl_nrow
TRUE TRUE
tsl_plot tsl_repair
TRUE TRUE
tsl_resample tsl_simulate
TRUE TRUE
tsl_smooth tsl_stats
TRUE TRUE
tsl_subset tsl_time
TRUE TRUE
tsl_time_summary tsl_to_df
TRUE TRUE
tsl_transform utils_as_time
TRUE TRUE
utils_block_size utils_boxplot_common
TRUE TRUE
utils_check_args_distantia utils_check_args_matrix
TRUE TRUE
utils_check_args_momentum utils_check_args_path
TRUE TRUE
utils_check_args_tsl utils_check_args_zoo
TRUE TRUE
utils_check_distance_args utils_check_list_class
TRUE TRUE
utils_clean_names utils_cluster_hclust_optimizer
TRUE TRUE
utils_cluster_kmeans_optimizer utils_cluster_silhouette
TRUE TRUE
utils_coerce_time_class utils_color_breaks
TRUE TRUE
utils_digits utils_distantia_df_split
TRUE TRUE
utils_drop_geometry utils_global_scaling_params
TRUE TRUE
utils_is_time utils_line_color
TRUE TRUE
utils_line_guide utils_matrix_guide
TRUE TRUE
utils_matrix_plot utils_new_time
TRUE TRUE
utils_new_time_type utils_optimize_loess
TRUE TRUE
utils_optimize_spline utils_prepare_df
TRUE TRUE
utils_prepare_matrix utils_prepare_matrix_list
TRUE TRUE
utils_prepare_time utils_prepare_vector_list
TRUE TRUE
utils_prepare_zoo_list utils_rescale_vector
TRUE TRUE
utils_time_keywords utils_time_keywords_dictionary
TRUE TRUE
utils_time_keywords_translate utils_time_units
TRUE TRUE
utils_tsl_pairs zoo_aggregate
TRUE TRUE
zoo_name_clean zoo_name_get
TRUE TRUE
zoo_name_set zoo_permute
TRUE TRUE
zoo_plot zoo_resample
TRUE TRUE
zoo_simulate zoo_smooth_exponential
TRUE TRUE
zoo_smooth_window zoo_time
TRUE TRUE
zoo_to_tsl zoo_vector_to_matrix
TRUE TRUE Examples
There are 186 help pages with examples, from 186 (100.00 %).
NEWS
The package has NEWS file and it is current.
License
The package uses .
Installation environment
System Info
| Field | Value |
|---|---|
| Image | rhub/ref-image |
| OS | Ubuntu 24.04.1 LTS |
| Platform | x86_64-pc-linux-gnu |
| System | x86_64, linux-gnu |
| Execution Time | 2025-02-18 04:17:35 UTC |
System information. Table about the system used to check the package.
R Session Info
Information about the R environment and capabilities:
R version 4.4.2 (2024-10-31)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 24.04.1 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so; LAPACK version 3.12.0
locale:
[1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8
[4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8
[7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C
time zone: UTC
tzcode source: system (glibc)
attached base packages:
[1] tools stats graphics grDevices utils datasets methods
[8] base
loaded via a namespace (and not attached):
[1] riskreports_0.0.0.9003 compiler_4.4.2 fastmap_1.2.0
[4] cli_3.6.4 htmltools_0.5.8.1 yaml_2.3.10
[7] rmarkdown_2.29 knitr_1.49 jsonlite_1.8.9
[10] xfun_0.50 digest_0.6.37 rlang_1.1.5
[13] evaluate_1.0.3 Platform used:
OS.type file.sep dynlib.ext GUI endian pkgType path.sep
"unix" "/" ".so" "X11" "little" "source" ":"
r_arch
"" R’s capabilities:
jpeg png tiff tcltk X11 aqua
TRUE TRUE TRUE TRUE FALSE FALSE
http/ftp sockets libxml fifo cledit iconv
TRUE TRUE FALSE TRUE FALSE TRUE
NLS Rprof profmem cairo ICU long.double
TRUE TRUE TRUE TRUE TRUE TRUE
libcurl
TRUE External software:
zlib
"1.3"
bzlib
"1.0.8, 13-Jul-2019"
xz
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libdeflate
"1.19"
PCRE
"10.42 2022-12-11"
ICU
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TRE
"TRE 0.8.0 R_fixes (BSD)"
iconv
"glibc 2.39"
readline
"8.2"
BLAS
"/usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3" Graphics external software:
cairo cairoFT pango
"1.18.0" "" "1.52.1"
libpng jpeg libtiff
"1.6.43" "8.0" "LIBTIFF, Version 4.5.1" Numerical characteristics of the machine:
double.eps double.neg.eps double.xmin
2.220446e-16 1.110223e-16 2.225074e-308
double.xmax double.base double.digits
1.797693e+308 2.000000e+00 5.300000e+01
double.rounding double.guard double.ulp.digits
5.000000e+00 0.000000e+00 -5.200000e+01
double.neg.ulp.digits double.exponent double.min.exp
-5.300000e+01 1.100000e+01 -1.022000e+03
double.max.exp integer.max sizeof.long
1.024000e+03 2.147484e+09 8.000000e+00
sizeof.longlong sizeof.longdouble sizeof.pointer
8.000000e+00 1.600000e+01 8.000000e+00
sizeof.time_t longdouble.eps longdouble.neg.eps
8.000000e+00 1.084202e-19 5.421011e-20
longdouble.digits longdouble.rounding longdouble.guard
6.400000e+01 5.000000e+00 0.000000e+00
longdouble.ulp.digits longdouble.neg.ulp.digits longdouble.exponent
-6.300000e+01 -6.400000e+01 1.500000e+01
longdouble.min.exp longdouble.max.exp
-1.638200e+04 1.638400e+04 Random number generation process:
[1] "Mersenne-Twister" "Inversion" "Rejection" Information about the environment
Environmental and options variables affect how package checks and software in it might behave. Here is the environmental variables when running this report
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FALSE
ACCEPT_EULA Y
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PERFLOG_LOCATION_SETTING
RUNNER_PERFLOG
PHARMAPKGS_EXCLUDED_METRICS
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PHARMAPKGS_LIMIT 1000
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TZ UTC
USER runner
VCPKG_INSTALLATION_ROOT
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$verbose
[1] FALSE
$warn
[1] 0
$warning.length
[1] 1000
$warnPartialMatchArgs
[1] FALSE
$warnPartialMatchAttr
[1] FALSE
$warnPartialMatchDollar
[1] FALSE
$width
[1] 80