Validation Report - datarobot@2.18.6

Context

This report is fully automated and builds on rhub/ref-image image. Documents the installation of this package on an open source R environment, focusing on:

  • Installation environment description
  • Testing coverage

It is limited to assess whether unit tests and documentation are present and can execute without error. An assessment would be required that the tests and documentation are meaningful.

Package datarobot

Metric based risk assessment

The following metrics are derived from the riskmetric R package.

has_news 1
news_current TRUE
exported_namespace 270
has_vignettes 78
export_help 270
has_website FALSE
has_maintainer AJ Alon
bugs_status package DESCRIPTION does not have a BugReports field
has_bug_reports_url 0
downloads_1yr 7667
reverse_dependencies 0
has_examples 1
dependencies 5
license MIT + file LICENSE

Package general assessment: Coverage, check results, size, download the last year, reverse dependencies and number of dependencies.

Dependencies

Overall the package has these dependencies:

package type
1 methods Depends
2 stats Depends
3 httr (>= 1.2.0) Imports
4 jsonlite (>= 1.0) Imports
5 yaml (>= 2.1.19) Imports

Package dependencies

Reverse dependencies

Overall the package has 0 reverse dependencies:

Namespace

Overall the package has 270 exported objects. 270 are documented:

                               AddEureqaSolution 
                                            TRUE 
                                   AutopilotMode 
                                            TRUE 
                      BatchFeaturesTypeTransform 
                                            TRUE 
                                    BlendMethods 
                                            TRUE 
                        BlueprintChartToGraphviz 
                                            TRUE 
          ClassificationDeploymentAccuracyMetric 
                                            TRUE 
                                    CloneProject 
                                            TRUE 
                              ConnectToDataRobot 
                                            TRUE 
                         ConstructDurationString 
                                            TRUE 
                     CreateBacktestSpecification 
                                            TRUE 
                                  CreateCalendar 
                                            TRUE 
                   CreateComplianceDocumentation 
                                            TRUE 
                                CreateDataSource 
                                            TRUE 
                                 CreateDataStore 
                                            TRUE 
            CreateDatetimePartitionSpecification 
                                            TRUE 
                                CreateDeployment 
                                            TRUE 
               CreateDerivedFeatureAsCategorical 
                                            TRUE 
                   CreateDerivedFeatureAsNumeric 
                                            TRUE 
                      CreateDerivedFeatureAsText 
                                            TRUE 
            CreateDerivedFeatureIntAsCategorical 
                                            TRUE 
                               CreateFeaturelist 
                                            TRUE 
                            CreateGroupPartition 
                                            TRUE 
                       CreateModelingFeaturelist 
                                            TRUE 
                                 CreatePrimeCode 
                                            TRUE 
                           CreateRandomPartition 
                                            TRUE 
                               CreateRatingTable 
                                            TRUE 
                       CreateStratifiedPartition 
                                            TRUE 
                             CreateUserPartition 
                                            TRUE 
                              CrossValidateModel 
                                            TRUE 
                                       cvMethods 
                                            TRUE 
                                   DataPartition 
                                            TRUE 
                                      DataSubset 
                                            TRUE 
                   DeleteAnomalyAssessmentRecord 
                                            TRUE 
                                  DeleteCalendar 
                                            TRUE 
                     DeleteComplianceDocTemplate 
                                            TRUE 
                                DeleteDataSource 
                                            TRUE 
                                 DeleteDataStore 
                                            TRUE 
                                DeleteDeployment 
                                            TRUE 
                               DeleteFeaturelist 
                                            TRUE 
                                       DeleteJob 
                                            TRUE 
                                     DeleteModel 
                                            TRUE 
                       DeleteModelingFeaturelist 
                                            TRUE 
                                  DeleteModelJob 
                                            TRUE 
                         DeletePredictionDataset 
                                            TRUE 
                    DeletePredictionExplanations 
                                            TRUE 
      DeletePredictionExplanationsInitialization 
                                            TRUE 
                                DeletePredictJob 
                                            TRUE 
                                   DeleteProject 
                                            TRUE 
                         DeleteTransferableModel 
                                            TRUE 
                        DeploymentAccuracyMetric 
                                            TRUE 
                   DeploymentServiceHealthMetric 
                                            TRUE 
                              DifferencingMethod 
                                            TRUE 
                   DownloadComplianceDocTemplate 
                                            TRUE 
                 DownloadComplianceDocumentation 
                                            TRUE 
                  DownloadPredictionExplanations 
                                            TRUE 
                               DownloadPrimeCode 
                                            TRUE 
                             DownloadRatingTable 
                                            TRUE 
                             DownloadScoringCode 
                                            TRUE 
                          DownloadSeriesAccuracy 
                                            TRUE 
          DownloadTimeSeriesFeatureDerivationLog 
                                            TRUE 
                     DownloadTrainingPredictions 
                                            TRUE 
                       DownloadTransferableModel 
                                            TRUE 
                             FeatureFromAsyncUrl 
                                            TRUE 
                       GenerateDatetimePartition 
                                            TRUE 
                GetAnomalyAssessmentExplanations 
                                            TRUE 
          GetAnomalyAssessmentPredictionsPreview 
                                            TRUE 
                                 GetBlenderModel 
                                            TRUE 
                        GetBlenderModelFromJobId 
                                            TRUE 
                                    GetBlueprint 
                                            TRUE 
                               GetBlueprintChart 
                                            TRUE 
                       GetBlueprintDocumentation 
                                            TRUE 
                                     GetCalendar 
                                            TRUE 
                          GetCalendarFromProject 
                                            TRUE 
                        GetComplianceDocTemplate 
                                            TRUE 
                               GetConfusionChart 
                                            TRUE 
                        GetCrossValidationScores 
                                            TRUE 
                                   GetDataSource 
                                            TRUE 
                                    GetDataStore 
                                            TRUE 
                             GetDataStoreSchemas 
                                            TRUE 
                              GetDataStoreTables 
                                            TRUE 
                                GetDatetimeModel 
                                            TRUE 
                       GetDatetimeModelFromJobId 
                                            TRUE 
                            GetDatetimePartition 
                                            TRUE 
                                   GetDeployment 
                                            TRUE 
                           GetDeploymentAccuracy 
                                            TRUE 
                   GetDeploymentAccuracyOverTime 
                                            TRUE 
                      GetDeploymentAssociationId 
                                            TRUE 
              GetDeploymentDriftTrackingSettings 
                                            TRUE 
                       GetDeploymentServiceStats 
                                            TRUE 
               GetDeploymentServiceStatsOverTime 
                                            TRUE 
                           GetDeploymentSettings 
                                            TRUE 
                                       GetDriver 
                                            TRUE 
                     GetFeatureAssociationMatrix 
                                            TRUE 
              GetFeatureAssociationMatrixDetails 
                                            TRUE 
                             GetFeatureHistogram 
                                            TRUE 
                                GetFeatureImpact 
                                            TRUE 
                        GetFeatureImpactForJobId 
                                            TRUE 
                        GetFeatureImpactForModel 
                                            TRUE 
                                  GetFeatureInfo 
                                            TRUE 
                                  GetFeaturelist 
                                            TRUE 
                                  GetFrozenModel 
                                            TRUE 
                         GetFrozenModelFromJobId 
                                            TRUE 
                                          GetJob 
                                            TRUE 
                                    GetLiftChart 
                                            TRUE 
                          GetMissingValuesReport 
                                            TRUE 
                                        GetModel 
                                            TRUE 
                          GetModelBlueprintChart 
                                            TRUE 
                  GetModelBlueprintDocumentation 
                                            TRUE 
                            GetModelCapabilities 
                                            TRUE 
                               GetModelFromJobId 
                                            TRUE 
                          GetModelingFeaturelist 
                                            TRUE 
                                     GetModelJob 
                                            TRUE 
                              GetModelParameters 
                                            TRUE 
                          GetModelRecommendation 
                                            TRUE 
                        GetMultiSeriesProperties 
                                            TRUE 
                                  GetParetoFront 
                                            TRUE 
                            GetPredictionDataset 
                                            TRUE 
                       GetPredictionExplanations 
                                            TRUE 
         GetPredictionExplanationsInitialization 
                                            TRUE 
GetPredictionExplanationsInitializationFromJobId 
                                            TRUE 
               GetPredictionExplanationsMetadata 
                                            TRUE 
      GetPredictionExplanationsMetadataFromJobId 
                                            TRUE 
                   GetPredictionExplanationsRows 
                                            TRUE 
        GetPredictionExplanationsRowsAsDataFrame 
                                            TRUE 
                                  GetPredictions 
                                            TRUE 
                                   GetPredictJob 
                                            TRUE 
                                  GetPredictJobs 
                                            TRUE 
                             GetPrimeEligibility 
                                            TRUE 
                                    GetPrimeFile 
                                            TRUE 
                           GetPrimeFileFromJobId 
                                            TRUE 
                                   GetPrimeModel 
                                            TRUE 
                          GetPrimeModelFromJobId 
                                            TRUE 
                                      GetProject 
                                            TRUE 
                                GetProjectStatus 
                                            TRUE 
                                  GetRatingTable 
                                            TRUE 
                         GetRatingTableFromJobId 
                                            TRUE 
                             GetRatingTableModel 
                                            TRUE 
                    GetRatingTableModelFromJobId 
                                            TRUE 
                             GetRecommendedModel 
                                            TRUE 
                               GetResidualsChart 
                                            TRUE 
                                     GetRocCurve 
                                            TRUE 
                                     GetRulesets 
                                            TRUE 
                               GetSeriesAccuracy 
                                            TRUE 
                       GetSeriesAccuracyForModel 
                                            TRUE 
               GetTimeSeriesFeatureDerivationLog 
                                            TRUE 
                          GetTrainingPredictions 
                                            TRUE 
                  GetTrainingPredictionsForModel 
                                            TRUE 
                 GetTrainingPredictionsFromJobId 
                                            TRUE 
                            GetTransferableModel 
                                            TRUE 
                             GetTuningParameters 
                                            TRUE 
                                 GetValidMetrics 
                                            TRUE 
                                    GetWordCloud 
                                            TRUE 
                     InitializeAnomalyAssessment 
                                            TRUE 
                               IsBlenderEligible 
                                            TRUE 
                                       JobStatus 
                                            TRUE 
                                         JobType 
                                            TRUE 
                    ListAnomalyAssessmentRecords 
                                            TRUE 
                                  ListBlueprints 
                                            TRUE 
                                   ListCalendars 
                                            TRUE 
                      ListComplianceDocTemplates 
                                            TRUE 
                             ListConfusionCharts 
                                            TRUE 
                                 ListDataSources 
                                            TRUE 
                                  ListDataStores 
                                            TRUE 
                                 ListDeployments 
                                            TRUE 
                                     ListDrivers 
                                            TRUE 
                                 ListFeatureInfo 
                                            TRUE 
                                ListFeaturelists 
                                            TRUE 
                                        ListJobs 
                                            TRUE 
                                  ListLiftCharts 
                                            TRUE 
                               ListModelFeatures 
                                            TRUE 
                        ListModelingFeaturelists 
                                            TRUE 
                                   ListModelJobs 
                                            TRUE 
                        ListModelRecommendations 
                                            TRUE 
                                      ListModels 
                                            TRUE 
                          ListPredictionDatasets 
                                            TRUE 
              ListPredictionExplanationsMetadata 
                                            TRUE 
                                 ListPredictions 
                                            TRUE 
                           ListPredictionServers 
                                            TRUE 
                                  ListPrimeFiles 
                                            TRUE 
                                 ListPrimeModels 
                                            TRUE 
                                    ListProjects 
                                            TRUE 
                           ListRatingTableModels 
                                            TRUE 
                                ListRatingTables 
                                            TRUE 
                             ListResidualsCharts 
                                            TRUE 
                                   ListRocCurves 
                                            TRUE 
                               ListSharingAccess 
                                            TRUE 
                               ListStarredModels 
                                            TRUE 
                         ListTrainingPredictions 
                                            TRUE 
                          ListTransferableModels 
                                            TRUE 
                                 ModelCapability 
                                            TRUE 
                          ModelReplacementReason 
                                            TRUE 
              MulticlassDeploymentAccuracyMetric 
                                            TRUE 
                                      PauseQueue 
                                            TRUE 
                          PeriodicityMaxTimeStep 
                                            TRUE 
                            PeriodicityTimeUnits 
                                            TRUE 
                               PostgreSQLdrivers 
                                            TRUE 
                                         Predict 
                                            TRUE 
                   PredictionDatasetFromAsyncUrl 
                                            TRUE 
                                   PrimeLanguage 
                                            TRUE 
                          ProjectFromJobResponse 
                                            TRUE 
                                    ProjectStage 
                                            TRUE 
                            RecommendedModelType 
                                            TRUE 
              RegressionDeploymentAccuracyMetric 
                                            TRUE 
                               RenameRatingTable 
                                            TRUE 
                            ReplaceDeployedModel 
                                            TRUE 
                            RequestApproximation 
                                            TRUE 
                                  RequestBlender 
                                            TRUE 
                     RequestCrossSeriesDetection 
                                            TRUE 
                            RequestFeatureImpact 
                                            TRUE 
                      RequestFrozenDatetimeModel 
                                            TRUE 
                              RequestFrozenModel 
                                            TRUE 
                     RequestMultiSeriesDetection 
                                            TRUE 
                         RequestNewDatetimeModel 
                                            TRUE 
                                 RequestNewModel 
                                            TRUE 
                      RequestNewRatingTableModel 
                                            TRUE 
                   RequestPredictionExplanations 
                                            TRUE 
     RequestPredictionExplanationsInitialization 
                                            TRUE 
                              RequestPredictions 
                                            TRUE 
                               RequestPrimeModel 
                                            TRUE 
                         RequestSampleSizeUpdate 
                                            TRUE 
                           RequestSeriesAccuracy 
                                            TRUE 
                      RequestTrainingPredictions 
                                            TRUE 
                        RequestTransferableModel 
                                            TRUE 
                            RunInteractiveTuning 
                                            TRUE 
                                  ScoreBacktests 
                                            TRUE 
                        SegmentAnalysisAttribute 
                                            TRUE 
                           SeriesAggregationType 
                                            TRUE 
                          SetPredictionThreshold 
                                            TRUE 
                                       SetTarget 
                                            TRUE 
                                    SetupProject 
                                            TRUE 
                      SetupProjectFromDataSource 
                                            TRUE 
                            SetupProjectFromHDFS 
                                            TRUE 
                                           Share 
                                            TRUE 
                                     SharingRole 
                                            TRUE 
                                      SourceType 
                                            TRUE 
                                       StarModel 
                                            TRUE 
                               StartNewAutoPilot 
                                            TRUE 
                                    StartProject 
                                            TRUE 
                              StartTuningSession 
                                            TRUE 
                                   SubmitActuals 
                                            TRUE 
                               TargetLeakageType 
                                            TRUE 
                                      TargetType 
                                            TRUE 
                                   TestDataStore 
                                            TRUE 
                                       TimeUnits 
                                            TRUE 
                              ToggleStarForModel 
                                            TRUE 
                              TreatAsExponential 
                                            TRUE 
                                    UnpauseQueue 
                                            TRUE 
                                     UnstarModel 
                                            TRUE 
                                    UpdateAccess 
                                            TRUE 
                                  UpdateCalendar 
                                            TRUE 
                     UpdateComplianceDocTemplate 
                                            TRUE 
                                UpdateDataSource 
                                            TRUE 
                                 UpdateDataStore 
                                            TRUE 
                   UpdateDeploymentAssociationId 
                                            TRUE 
           UpdateDeploymentDriftTrackingSettings 
                                            TRUE 
                               UpdateFeaturelist 
                                            TRUE 
                       UpdateModelingFeaturelist 
                                            TRUE 
                                   UpdateProject 
                                            TRUE 
                         UpdateTransferableModel 
                                            TRUE 
                     UploadComplianceDocTemplate 
                                            TRUE 
                         UploadPredictionDataset 
                                            TRUE 
           UploadPredictionDatasetFromDataSource 
                                            TRUE 
                         UploadTransferableModel 
                                            TRUE 
                   ValidateMultiSeriesProperties 
                                            TRUE 
                    ValidateReplaceDeployedModel 
                                            TRUE 
                          VariableTransformTypes 
                                            TRUE 
                                    ViewWebModel 
                                            TRUE 
                                  ViewWebProject 
                                            TRUE 
                                WaitForAutopilot 
                                            TRUE 
                            WaitForJobToComplete 
                                            TRUE 

Examples

There are 313 help pages with examples, from 313 (100.00 %).

NEWS

The package has NEWS file and it is current.

License

The package uses .

Installation environment

System Info

Field Value
Image rhub/ref-image
OS Ubuntu 24.04.1 LTS
Platform x86_64-pc-linux-gnu
System x86_64, linux-gnu
Execution Time 2025-02-17 05:00:24 UTC

System information. Table about the system used to check the package.

R Session Info

Information about the R environment and capabilities:

R version 4.4.2 (2024-10-31)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 24.04.1 LTS

Matrix products: default
BLAS:   /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so;  LAPACK version 3.12.0

locale:
 [1] LC_CTYPE=C.UTF-8       LC_NUMERIC=C           LC_TIME=C.UTF-8       
 [4] LC_COLLATE=C.UTF-8     LC_MONETARY=C.UTF-8    LC_MESSAGES=C.UTF-8   
 [7] LC_PAPER=C.UTF-8       LC_NAME=C              LC_ADDRESS=C          
[10] LC_TELEPHONE=C         LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C   

time zone: UTC
tzcode source: system (glibc)

attached base packages:
[1] tools     stats     graphics  grDevices utils     datasets  methods  
[8] base     

loaded via a namespace (and not attached):
 [1] riskreports_0.0.0.9003 compiler_4.4.2         fastmap_1.2.0         
 [4] cli_3.6.4              htmltools_0.5.8.1      yaml_2.3.10           
 [7] rmarkdown_2.29         knitr_1.49             jsonlite_1.8.9        
[10] xfun_0.50              digest_0.6.37          rlang_1.1.5           
[13] evaluate_1.0.3        

Platform used:

   OS.type   file.sep dynlib.ext        GUI     endian    pkgType   path.sep 
    "unix"        "/"      ".so"      "X11"   "little"   "source"        ":" 
    r_arch 
        "" 

R’s capabilities:

       jpeg         png        tiff       tcltk         X11        aqua 
       TRUE        TRUE        TRUE        TRUE       FALSE       FALSE 
   http/ftp     sockets      libxml        fifo      cledit       iconv 
       TRUE        TRUE       FALSE        TRUE       FALSE        TRUE 
        NLS       Rprof     profmem       cairo         ICU long.double 
       TRUE        TRUE        TRUE        TRUE        TRUE        TRUE 
    libcurl 
       TRUE 

External software:

                                                     zlib 
                                                    "1.3" 
                                                    bzlib 
                                     "1.0.8, 13-Jul-2019" 
                                                       xz 
                                                  "5.4.5" 
                                               libdeflate 
                                                   "1.19" 
                                                     PCRE 
                                       "10.42 2022-12-11" 
                                                      ICU 
                                                   "74.2" 
                                                      TRE 
                                "TRE 0.8.0 R_fixes (BSD)" 
                                                    iconv 
                                             "glibc 2.39" 
                                                 readline 
                                                    "8.2" 
                                                     BLAS 
"/usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3" 

Graphics external software:

                   cairo                  cairoFT                    pango 
                "1.18.0"                       ""                 "1.52.1" 
                  libpng                     jpeg                  libtiff 
                "1.6.43"                    "8.0" "LIBTIFF, Version 4.5.1" 

Numerical characteristics of the machine:

               double.eps            double.neg.eps               double.xmin 
             2.220446e-16              1.110223e-16             2.225074e-308 
              double.xmax               double.base             double.digits 
            1.797693e+308              2.000000e+00              5.300000e+01 
          double.rounding              double.guard         double.ulp.digits 
             5.000000e+00              0.000000e+00             -5.200000e+01 
    double.neg.ulp.digits           double.exponent            double.min.exp 
            -5.300000e+01              1.100000e+01             -1.022000e+03 
           double.max.exp               integer.max               sizeof.long 
             1.024000e+03              2.147484e+09              8.000000e+00 
          sizeof.longlong         sizeof.longdouble            sizeof.pointer 
             8.000000e+00              1.600000e+01              8.000000e+00 
            sizeof.time_t            longdouble.eps        longdouble.neg.eps 
             8.000000e+00              1.084202e-19              5.421011e-20 
        longdouble.digits       longdouble.rounding          longdouble.guard 
             6.400000e+01              5.000000e+00              0.000000e+00 
    longdouble.ulp.digits longdouble.neg.ulp.digits       longdouble.exponent 
            -6.300000e+01             -6.400000e+01              1.500000e+01 
       longdouble.min.exp        longdouble.max.exp 
            -1.638200e+04              1.638400e+04 

Random number generation process:

[1] "Mersenne-Twister" "Inversion"        "Rejection"       

Information about the environment

Environmental and options variables affect how package checks and software in it might behave. Here is the environmental variables when running this report

_R_CHECK_SYSTEM_CLOCK_
                        FALSE
ACCEPT_EULA             Y
ACTIONS_RUNNER_ACTION_ARCHIVE_CACHE
                        /opt/actionarchivecache
AGENT_TOOLSDIRECTORY    /opt/hostedtoolcache
ANDROID_HOME            /usr/local/lib/android/sdk
ANDROID_NDK             /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_HOME        /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_LATEST_HOME
                        /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_ROOT        /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_SDK_ROOT        /usr/local/lib/android/sdk
ANT_HOME                /usr/share/ant
AZURE_EXTENSION_DIR     /opt/az/azcliextensions
BOOTSTRAP_HASKELL_NONINTERACTIVE
                        1
BUNDLE_EXT              linux-amd64.deb
CHROME_BIN              /usr/bin/google-chrome
CHROMEWEBDRIVER         /usr/local/share/chromedriver-linux64
CI                      true
CONDA                   /usr/share/miniconda
DEBIAN_FRONTEND         noninteractive
DENO_DOM_PLUGIN         /opt/quarto/bin/tools/x86_64/deno_dom/libplugin.so
DENO_NO_UPDATE_CHECK    1
DENO_TLS_CA_STORE       system,mozilla
DEPLOYMENT_BASEPATH     /opt/runner
DOTNET_MULTILEVEL_LOOKUP
                        0
DOTNET_NOLOGO           1
DOTNET_SKIP_FIRST_TIME_EXPERIENCE
                        1
EDGEWEBDRIVER           /usr/local/share/edge_driver
EDITOR                  vi
GECKOWEBDRIVER          /usr/local/share/gecko_driver
GHCUP_INSTALL_BASE_PREFIX
                        /usr/local
GITHUB_ACTION           __run
GITHUB_ACTION_REF       
GITHUB_ACTION_REPOSITORY
                        
GITHUB_ACTIONS          true
GITHUB_ACTOR            llrs-roche
GITHUB_ACTOR_ID         185338939
GITHUB_API_URL          https://api.github.com
GITHUB_BASE_REF         
GITHUB_ENV              /home/runner/work/_temp/_runner_file_commands/set_env_24251222-dc77-41e6-994a-03413e3e9f5f
GITHUB_EVENT_NAME       schedule
GITHUB_EVENT_PATH       /home/runner/work/_temp/_github_workflow/event.json
GITHUB_GRAPHQL_URL      https://api.github.com/graphql
GITHUB_HEAD_REF         
GITHUB_JOB              main
GITHUB_OUTPUT           /home/runner/work/_temp/_runner_file_commands/set_output_24251222-dc77-41e6-994a-03413e3e9f5f
GITHUB_PATH             /home/runner/work/_temp/_runner_file_commands/add_path_24251222-dc77-41e6-994a-03413e3e9f5f
GITHUB_REF              refs/heads/main
GITHUB_REF_NAME         main
GITHUB_REF_PROTECTED    false
GITHUB_REF_TYPE         branch
GITHUB_REPOSITORY       pharmaR/pharmapkgs
GITHUB_REPOSITORY_ID    798326913
GITHUB_REPOSITORY_OWNER
                        pharmaR
GITHUB_REPOSITORY_OWNER_ID
                        42115094
GITHUB_RETENTION_DAYS   90
GITHUB_RUN_ATTEMPT      1
GITHUB_RUN_ID           13362121460
GITHUB_RUN_NUMBER       94
GITHUB_SERVER_URL       https://github.com
GITHUB_SHA              b25eba80408a4e3db53f5896d441ff2685638e62
GITHUB_STATE            /home/runner/work/_temp/_runner_file_commands/save_state_24251222-dc77-41e6-994a-03413e3e9f5f
GITHUB_STEP_SUMMARY     /home/runner/work/_temp/_runner_file_commands/step_summary_24251222-dc77-41e6-994a-03413e3e9f5f
GITHUB_TRIGGERING_ACTOR
                        llrs-roche
GITHUB_WORKFLOW         Update package repositories
GITHUB_WORKFLOW_REF     pharmaR/pharmapkgs/.github/workflows/update-repos.yml@refs/heads/main
GITHUB_WORKFLOW_SHA     b25eba80408a4e3db53f5896d441ff2685638e62
GITHUB_WORKSPACE        /home/runner/work/pharmapkgs/pharmapkgs
GOROOT_1_21_X64         /opt/hostedtoolcache/go/1.21.13/x64
GOROOT_1_22_X64         /opt/hostedtoolcache/go/1.22.12/x64
GOROOT_1_23_X64         /opt/hostedtoolcache/go/1.23.6/x64
GRADLE_HOME             /usr/share/gradle-8.12.1
HOME                    /home/runner
HOMEBREW_CLEANUP_PERIODIC_FULL_DAYS
                        3650
HOMEBREW_NO_AUTO_UPDATE
                        1
ImageOS                 ubuntu24
ImageVersion            20250209.1.0
INVOCATION_ID           d5e471a50fd941d195319ae0e3c382bb
JAVA_HOME               /usr/lib/jvm/temurin-17-jdk-amd64
JAVA_HOME_11_X64        /usr/lib/jvm/temurin-11-jdk-amd64
JAVA_HOME_17_X64        /usr/lib/jvm/temurin-17-jdk-amd64
JAVA_HOME_21_X64        /usr/lib/jvm/temurin-21-jdk-amd64
JAVA_HOME_8_X64         /usr/lib/jvm/temurin-8-jdk-amd64
JOURNAL_STREAM          8:6772
LANG                    C.UTF-8
LD_LIBRARY_PATH         /opt/R/4.4.2/lib/R/lib:/usr/local/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/temurin-17-jdk-amd64/lib/server:/opt/R/4.4.2/lib/R/lib:/usr/local/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/temurin-17-jdk-amd64/lib/server
LN_S                    ln -s
LOGGER_LOG_LEVEL        DEBUG
MAKE                    make
MEMORY_PRESSURE_WATCH   /sys/fs/cgroup/system.slice/runner-provisioner.service/memory.pressure
MEMORY_PRESSURE_WRITE   c29tZSAyMDAwMDAgMjAwMDAwMAA=
NOT_CRAN                true
NVM_DIR                 /home/runner/.nvm
PAGER                   /usr/bin/pager
PATH                    /snap/bin:/home/runner/.local/bin:/opt/pipx_bin:/home/runner/.cargo/bin:/home/runner/.config/composer/vendor/bin:/usr/local/.ghcup/bin:/home/runner/.dotnet/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
PERFLOG_LOCATION_SETTING
                        RUNNER_PERFLOG
PHARMAPKGS_EXCLUDED_METRICS
                        assess_covr_coverage,assess_r_cmd_check
PHARMAPKGS_LIMIT        1000
PHARMAPKGS_PLATFORM     ubuntu-22.04
PHARMAPKGS_R_VERSION    4.4
PHARMAPKGS_REMOTE_REPO
                        https://cloud.r-project.org/
PIPX_BIN_DIR            /opt/pipx_bin
PIPX_HOME               /opt/pipx
PKGCACHE_HTTP_VERSION   2
PKGLOAD_PARENT_TEMPDIR
                        /tmp/RtmpjxUEUq
POWERSHELL_DISTRIBUTION_CHANNEL
                        GitHub-Actions-ubuntu24
PROCESSX_PS1bd620e0f449_1739768418
                        YES
PWD                     /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_BIN_PATH         /opt/quarto/bin
QUARTO_DENO             /opt/quarto/bin/tools/x86_64/deno
QUARTO_DOCUMENT_PATH    /home/runner/work/pharmapkgs/pharmapkgs/inst/report
QUARTO_PROFILE          
QUARTO_PROJECT_DIR      /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_PROJECT_ROOT     /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_ROOT             /
QUARTO_SHARE_PATH       /opt/quarto/share
R_ARCH                  
R_BROWSER               xdg-open
R_BZIPCMD               /usr/bin/bzip2
R_DOC_DIR               /opt/R/4.4.2/lib/R/doc
R_GZIPCMD               /usr/bin/gzip
R_HOME                  /opt/R/4.4.2/lib/R
R_INCLUDE_DIR           /opt/R/4.4.2/lib/R/include
R_LIB_FOR_PAK           /opt/R/4.4.2/lib/R/site-library
R_LIBS_SITE             /opt/R/4.4.2/lib/R/site-library
R_LIBS_USER             /home/runner/work/_temp/Library
R_PAPERSIZE             letter
R_PAPERSIZE_USER        letter
R_PDFVIEWER             /usr/bin/xdg-open
R_PLATFORM              x86_64-pc-linux-gnu
R_PRINTCMD              /usr/bin/lpr
R_RD4PDF                times,inconsolata,hyper
R_SESSION_TMPDIR        /tmp/Rtmpw3SJxJ
R_SHARE_DIR             /opt/R/4.4.2/lib/R/share
R_STRIP_SHARED_LIB      strip --strip-unneeded
R_STRIP_STATIC_LIB      strip --strip-debug
R_TEXI2DVICMD           /usr/bin/texi2dvi
R_UNZIPCMD              /usr/bin/unzip
R_ZIPCMD                /usr/bin/zip
RUNNER_ARCH             X64
RUNNER_ENVIRONMENT      github-hosted
RUNNER_NAME             GitHub Actions 16
RUNNER_OS               Linux
RUNNER_PERFLOG          /home/runner/perflog
RUNNER_TEMP             /home/runner/work/_temp
RUNNER_TOOL_CACHE       /opt/hostedtoolcache
RUNNER_TRACKING_ID      github_84602b48-6461-4335-a438-3ca558c890e8
RUNNER_USER             runner
RUNNER_WORKSPACE        /home/runner/work/pharmapkgs
SED                     /usr/bin/sed
SELENIUM_JAR_PATH       /usr/share/java/selenium-server.jar
SGX_AESM_ADDR           1
SHLVL                   1
STATS_D                 true
STATS_D_D               true
STATS_D_TC              true
STATS_EXT               true
STATS_EXTP              https://provjobdprod.z13.web.core.windows.net/settings/provjobdsettings-latest/provjobd.data
STATS_PIP               false
STATS_RDCL              true
STATS_TRP               true
STATS_UE                true
STATS_V3PS              true
STATS_VMD               true
STATS_VMFE              true
SWIFT_PATH              /usr/share/swift/usr/bin
SYSTEMD_EXEC_PID        830
TAR                     /usr/bin/tar
TZ                      UTC
USER                    runner
VCPKG_INSTALLATION_ROOT
                        /usr/local/share/vcpkg
XDG_CONFIG_HOME         /home/runner/.config
XDG_RUNTIME_DIR         /run/user/1001

These are the options set to generate the report:

$add.smooth
[1] TRUE

$bitmapType
[1] "cairo"

$browser
[1] "xdg-open"

$browserNLdisabled
[1] FALSE

$callr.condition_handler_cli_message
function (msg) 
{
    custom_handler <- getOption("cli.default_handler")
    if (is.function(custom_handler)) {
        custom_handler(msg)
    }
    else {
        cli_server_default(msg)
    }
}
<bytecode: 0x55a1a9a01910>
<environment: namespace:cli>

$catch.script.errors
[1] FALSE

$CBoundsCheck
[1] FALSE

$check.bounds
[1] FALSE

$citation.bibtex.max
[1] 1

$continue
[1] "+ "

$contrasts
        unordered           ordered 
"contr.treatment"      "contr.poly" 

$covr.record_tests
[1] TRUE

$defaultPackages
[1] "datasets"  "utils"     "grDevices" "graphics"  "stats"     "methods"  

$demo.ask
[1] "default"

$deparse.cutoff
[1] 60

$device
function (width = 7, height = 7, ...) 
{
    grDevices::pdf(NULL, width, height, ...)
}
<bytecode: 0x55a1a90e6480>
<environment: namespace:knitr>

$device.ask.default
[1] FALSE

$digits
[1] 7

$dvipscmd
[1] "dvips"

$echo
[1] FALSE

$editor
[1] "vi"

$encoding
[1] "native.enc"

$example.ask
[1] "default"

$expressions
[1] 5000

$help.search.types
[1] "vignette" "demo"     "help"    

$help.try.all.packages
[1] FALSE

$htmltools.preserve.raw
[1] TRUE

$HTTPUserAgent
[1] "R/4.4.2 R (4.4.2 x86_64-pc-linux-gnu x86_64 linux-gnu) on GitHub Actions"

$internet.info
[1] 2

$keep.parse.data
[1] TRUE

$keep.parse.data.pkgs
[1] FALSE

$keep.source
[1] FALSE

$keep.source.pkgs
[1] FALSE

$knitr.in.progress
[1] TRUE

$locatorBell
[1] TRUE

$mailer
[1] "mailto"

$matprod
[1] "default"

$max.contour.segments
[1] 25000

$max.print
[1] 99999

$menu.graphics
[1] TRUE

$na.action
[1] "na.omit"

$Ncpus
[1] 1

$nwarnings
[1] 50

$OutDec
[1] "."

$pager
[1] "/opt/R/4.4.2/lib/R/bin/pager"

$papersize
[1] "letter"

$PCRE_limit_recursion
[1] NA

$PCRE_study
[1] FALSE

$PCRE_use_JIT
[1] TRUE

$pdfviewer
[1] "/usr/bin/xdg-open"

$pkgType
[1] "source"

$printcmd
[1] "/usr/bin/lpr"

$prompt
[1] "> "

$repos
                      CRAN 
"https://cran.rstudio.com" 

$rl_word_breaks
[1] " \t\n\"\\'`><=%;,|&{()}"

$rlang_trace_top_env
<environment: R_GlobalEnv>

$scipen
[1] 0

$show.coef.Pvalues
[1] TRUE

$show.error.messages
[1] TRUE

$show.signif.stars
[1] TRUE

$showErrorCalls
[1] TRUE

$showNCalls
[1] 50

$showWarnCalls
[1] FALSE

$str
$str$strict.width
[1] "no"

$str$digits.d
[1] 3

$str$vec.len
[1] 4

$str$list.len
[1] 99

$str$deparse.lines
NULL

$str$drop.deparse.attr
[1] TRUE

$str$formatNum
function (x, ...) 
format(x, trim = TRUE, drop0trailing = TRUE, ...)
<environment: 0x55a1a8ed9520>


$str.dendrogram.last
[1] "`"

$texi2dvi
[1] "/usr/bin/texi2dvi"

$tikzMetricsDictionary
[1] "validation_report_datarobot_v2.18.6-tikzDictionary"

$timeout
[1] 60

$try.outFile
A connection with                    
description ""      
class       "file"  
mode        "w+b"   
text        "binary"
opened      "opened"
can read    "yes"   
can write   "yes"   

$ts.eps
[1] 1e-05

$ts.S.compat
[1] FALSE

$unzip
[1] "/usr/bin/unzip"

$useFancyQuotes
[1] FALSE

$verbose
[1] FALSE

$warn
[1] 0

$warning.length
[1] 1000

$warnPartialMatchArgs
[1] FALSE

$warnPartialMatchAttr
[1] FALSE

$warnPartialMatchDollar
[1] FALSE

$width
[1] 80