Validation Report - dataquieR@2.5.0
Context
This report is fully automated and builds on rhub/ref-image image. Documents the installation of this package on an open source R environment, focusing on:
- Installation environment description
- Testing coverage
It is limited to assess whether unit tests and documentation are present and can execute without error. An assessment would be required that the tests and documentation are meaningful.
Package dataquieR
Metric based risk assessment
The following metrics are derived from the riskmetric R package.
| has_news | 1 |
| news_current | FALSE |
| exported_namespace | 161 |
| has_vignettes | 2 |
| export_help | 161 |
| has_website | TRUE |
| has_maintainer | Stephan Struckmann stephan.struckmann@uni-greifswald.de |
| bugs_status | subscript out of bounds |
| has_bug_reports_url | 1 |
| downloads_1yr | 4462 |
| reverse_dependencies | 0 |
| has_examples | 0.8791423 |
| dependencies | 21 |
| license | BSD_2_clause + file LICENSE |
Package general assessment: Coverage, check results, size, download the last year, reverse dependencies and number of dependencies.
Dependencies
Overall the package has these dependencies:
| package | type | |
|---|---|---|
| 1 | dplyr (>= 1.0.2) | Imports |
| 2 | emmeans | Imports |
| 3 | ggplot2 (>= 3.5.0) | Imports |
| 4 | lme4 | Imports |
| 5 | lubridate | Imports |
| 6 | MASS | Imports |
| 7 | MultinomialCI | Imports |
| 8 | parallelMap | Imports |
| 9 | patchwork (>= 1.3.0) | Imports |
| 10 | R.devices | Imports |
| 11 | rlang | Imports |
| 12 | robustbase | Imports |
| 13 | qmrparser | Imports |
| 14 | utils | Imports |
| 15 | rio | Imports |
| 16 | readr | Imports |
| 17 | scales | Imports |
| 18 | withr | Imports |
| 19 | lifecycle | Imports |
| 20 | units | Imports |
| 21 | methods | Imports |
Package dependencies
Reverse dependencies
Overall the package has 0 reverse dependencies:
Namespace
Overall the package has 161 exported objects. 161 are documented:
.get_internal_api
TRUE
acc_cat_distributions
TRUE
acc_distributions
TRUE
acc_distributions_ecdf
TRUE
acc_distributions_loc
TRUE
acc_distributions_only
TRUE
acc_distributions_prop
TRUE
acc_end_digits
TRUE
acc_loess
TRUE
acc_margins
TRUE
acc_multivariate_outlier
TRUE
acc_robust_univariate_outlier
TRUE
acc_shape_or_scale
TRUE
acc_univariate_outlier
TRUE
acc_varcomp
TRUE
API_VERSION
TRUE
ASSOCIATION_DIRECTION
TRUE
ASSOCIATION_FORM
TRUE
ASSOCIATION_METRIC
TRUE
ASSOCIATION_RANGE
TRUE
CHECK_ID
TRUE
CHECK_LABEL
TRUE
CODE_CLASS
TRUE
CODE_CLASSES
TRUE
CODE_INTERPRET
TRUE
CODE_LABEL
TRUE
CODE_LIST_TABLE
TRUE
CODE_ORDER
TRUE
CODE_VALUE
TRUE
com_item_missingness
TRUE
com_qualified_item_missingness
TRUE
com_qualified_segment_missingness
TRUE
com_segment_missingness
TRUE
com_unit_missingness
TRUE
con_contradictions
TRUE
con_contradictions_redcap
TRUE
con_inadmissible_categorical
TRUE
con_inadmissible_vocabulary
TRUE
con_limit_deviations
TRUE
contradiction_functions
TRUE
contradiction_functions_descriptions
TRUE
CONTRADICTION_TERM
TRUE
CONTRADICTION_TYPE
TRUE
DATA_PREPARATION
TRUE
DATA_TYPES
TRUE
DATA_TYPES_OF_R_TYPE
TRUE
des_scatterplot_matrix
TRUE
des_summary
TRUE
des_summary_categorical
TRUE
des_summary_continuous
TRUE
DF_CODE
TRUE
DF_ELEMENT_COUNT
TRUE
DF_ID_REF_TABLE
TRUE
DF_ID_VARS
TRUE
DF_NAME
TRUE
DF_RECORD_CHECK
TRUE
DF_RECORD_COUNT
TRUE
DF_UNIQUE_ID
TRUE
DF_UNIQUE_ROWS
TRUE
DISTRIBUTIONS
TRUE
dq_report
TRUE
dq_report_by
TRUE
dq_report2
TRUE
GOLDSTANDARD
TRUE
int_all_datastructure_dataframe
TRUE
int_all_datastructure_segment
TRUE
int_datatype_matrix
TRUE
int_duplicate_content
TRUE
int_duplicate_ids
TRUE
int_encoding_errors
TRUE
int_part_vars_structure
TRUE
int_sts_element_dataframe
TRUE
int_sts_element_segment
TRUE
int_unexp_elements
TRUE
int_unexp_records_dataframe
TRUE
int_unexp_records_segment
TRUE
int_unexp_records_set
TRUE
MULTIVARIATE_OUTLIER_CHECK
TRUE
MULTIVARIATE_OUTLIER_CHECKTYPE
TRUE
N_RULES
TRUE
nres
TRUE
pipeline_recursive_result
TRUE
pipeline_vectorized
TRUE
prep_acc_distributions_with_ecdf
TRUE
prep_add_cause_label_df
TRUE
prep_add_computed_variables
TRUE
prep_add_data_frames
TRUE
prep_add_missing_codes
TRUE
prep_add_to_meta
TRUE
prep_apply_coding
TRUE
prep_check_for_dataquieR_updates
TRUE
prep_check_meta_data_dataframe
TRUE
prep_check_meta_data_segment
TRUE
prep_check_meta_names
TRUE
prep_clean_labels
TRUE
prep_combine_report_summaries
TRUE
prep_compare_meta_with_study
TRUE
prep_create_meta
TRUE
prep_create_meta_data_file
TRUE
prep_create_storr_factory
TRUE
prep_datatype_from_data
TRUE
prep_deparse_assignments
TRUE
prep_dq_data_type_of
TRUE
prep_expand_codes
TRUE
prep_extract_cause_label_df
TRUE
prep_extract_classes_by_functions
TRUE
prep_extract_summary
TRUE
prep_get_data_frame
TRUE
prep_get_labels
TRUE
prep_get_study_data_segment
TRUE
prep_get_user_name
TRUE
prep_get_variant
TRUE
prep_guess_encoding
TRUE
prep_link_escape
TRUE
prep_list_dataframes
TRUE
prep_list_voc
TRUE
prep_load_folder_with_metadata
TRUE
prep_load_report
TRUE
prep_load_report_from_backend
TRUE
prep_load_workbook_like_file
TRUE
prep_map_labels
TRUE
prep_merge_study_data
TRUE
prep_meta_data_v1_to_item_level_meta_data
TRUE
prep_min_obs_level
TRUE
prep_open_in_excel
TRUE
prep_pmap
TRUE
prep_prepare_dataframes
TRUE
prep_purge_data_frame_cache
TRUE
prep_remove_from_cache
TRUE
prep_render_pie_chart_from_summaryclasses_ggplot2
TRUE
prep_render_pie_chart_from_summaryclasses_plotly
TRUE
prep_robust_guess_data_type
TRUE
prep_save_report
TRUE
prep_scalelevel_from_data_and_metadata
TRUE
prep_set_backend
TRUE
prep_study2meta
TRUE
prep_summary_to_classes
TRUE
prep_title_escape
TRUE
prep_undisclose
TRUE
prep_unsplit_val_tabs
TRUE
prep_valuelabels_from_data
TRUE
pro_applicability_matrix
TRUE
REL_VAL
TRUE
resnames
TRUE
RULE
TRUE
SCALE_LEVELS
TRUE
SEGMENT_ID_REF_TABLE
TRUE
SEGMENT_ID_TABLE
TRUE
SEGMENT_ID_VARS
TRUE
SEGMENT_MISS
TRUE
SEGMENT_PART_VARS
TRUE
SEGMENT_RECORD_CHECK
TRUE
SEGMENT_RECORD_COUNT
TRUE
SEGMENT_UNIQUE_ID
TRUE
SEGMENT_UNIQUE_ROWS
TRUE
SPLIT_CHAR
TRUE
UNIVARIATE_OUTLIER_CHECKTYPE
TRUE
VARATT_REQUIRE_LEVELS
TRUE
VARIABLE_LIST
TRUE
VARIABLE_ROLES
TRUE
WELL_KNOWN_META_VARIABLE_NAMES
TRUE Examples
There are 451 help pages with examples, from 513 (87.91 %).
NEWS
The package has NEWS file and it is current.
License
The package uses .
Installation environment
System Info
| Field | Value |
|---|---|
| Image | rhub/ref-image |
| OS | Ubuntu 24.04.1 LTS |
| Platform | x86_64-pc-linux-gnu |
| System | x86_64, linux-gnu |
| Execution Time | 2025-02-24 03:25:08 UTC |
System information. Table about the system used to check the package.
R Session Info
Information about the R environment and capabilities:
R version 4.4.2 (2024-10-31)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 24.04.1 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so; LAPACK version 3.12.0
locale:
[1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8
[4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8
[7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C
time zone: UTC
tzcode source: system (glibc)
attached base packages:
[1] tools stats graphics grDevices utils datasets methods
[8] base
loaded via a namespace (and not attached):
[1] riskreports_0.0.0.9003 compiler_4.4.2 fastmap_1.2.0
[4] cli_3.6.4 htmltools_0.5.8.1 yaml_2.3.10
[7] rmarkdown_2.29 knitr_1.49 jsonlite_1.9.0
[10] xfun_0.51 digest_0.6.37 rlang_1.1.5
[13] evaluate_1.0.3 Platform used:
OS.type file.sep dynlib.ext GUI endian pkgType path.sep
"unix" "/" ".so" "X11" "little" "source" ":"
r_arch
"" R’s capabilities:
jpeg png tiff tcltk X11 aqua
TRUE TRUE TRUE TRUE FALSE FALSE
http/ftp sockets libxml fifo cledit iconv
TRUE TRUE FALSE TRUE FALSE TRUE
NLS Rprof profmem cairo ICU long.double
TRUE TRUE TRUE TRUE TRUE TRUE
libcurl
TRUE External software:
zlib
"1.3"
bzlib
"1.0.8, 13-Jul-2019"
xz
"5.4.5"
libdeflate
"1.19"
PCRE
"10.42 2022-12-11"
ICU
"74.2"
TRE
"TRE 0.8.0 R_fixes (BSD)"
iconv
"glibc 2.39"
readline
"8.2"
BLAS
"/usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3" Graphics external software:
cairo cairoFT pango
"1.18.0" "" "1.52.1"
libpng jpeg libtiff
"1.6.43" "8.0" "LIBTIFF, Version 4.5.1" Numerical characteristics of the machine:
double.eps double.neg.eps double.xmin
2.220446e-16 1.110223e-16 2.225074e-308
double.xmax double.base double.digits
1.797693e+308 2.000000e+00 5.300000e+01
double.rounding double.guard double.ulp.digits
5.000000e+00 0.000000e+00 -5.200000e+01
double.neg.ulp.digits double.exponent double.min.exp
-5.300000e+01 1.100000e+01 -1.022000e+03
double.max.exp integer.max sizeof.long
1.024000e+03 2.147484e+09 8.000000e+00
sizeof.longlong sizeof.longdouble sizeof.pointer
8.000000e+00 1.600000e+01 8.000000e+00
sizeof.time_t longdouble.eps longdouble.neg.eps
8.000000e+00 1.084202e-19 5.421011e-20
longdouble.digits longdouble.rounding longdouble.guard
6.400000e+01 5.000000e+00 0.000000e+00
longdouble.ulp.digits longdouble.neg.ulp.digits longdouble.exponent
-6.300000e+01 -6.400000e+01 1.500000e+01
longdouble.min.exp longdouble.max.exp
-1.638200e+04 1.638400e+04 Random number generation process:
[1] "Mersenne-Twister" "Inversion" "Rejection" Information about the environment
Environmental and options variables affect how package checks and software in it might behave. Here is the environmental variables when running this report
_R_CHECK_SYSTEM_CLOCK_
FALSE
ACCEPT_EULA Y
ACTIONS_RUNNER_ACTION_ARCHIVE_CACHE
/opt/actionarchivecache
AGENT_TOOLSDIRECTORY /opt/hostedtoolcache
ANDROID_HOME /usr/local/lib/android/sdk
ANDROID_NDK /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_HOME /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_LATEST_HOME
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ANDROID_NDK_ROOT /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_SDK_ROOT /usr/local/lib/android/sdk
ANT_HOME /usr/share/ant
AZURE_EXTENSION_DIR /opt/az/azcliextensions
BOOTSTRAP_HASKELL_NONINTERACTIVE
1
BUNDLE_EXT linux-amd64.deb
CHROME_BIN /usr/bin/google-chrome
CHROMEWEBDRIVER /usr/local/share/chromedriver-linux64
CI true
CONDA /usr/share/miniconda
DEBIAN_FRONTEND noninteractive
DENO_DOM_PLUGIN /opt/quarto/bin/tools/x86_64/deno_dom/libplugin.so
DENO_NO_UPDATE_CHECK 1
DENO_TLS_CA_STORE system,mozilla
DEPLOYMENT_BASEPATH /opt/runner
DOTNET_MULTILEVEL_LOOKUP
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DOTNET_NOLOGO 1
DOTNET_SKIP_FIRST_TIME_EXPERIENCE
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EDGEWEBDRIVER /usr/local/share/edge_driver
EDITOR vi
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GHCUP_INSTALL_BASE_PREFIX
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GITHUB_ACTION __run
GITHUB_ACTION_REF
GITHUB_ACTION_REPOSITORY
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GITHUB_ACTOR llrs-roche
GITHUB_ACTOR_ID 185338939
GITHUB_API_URL https://api.github.com
GITHUB_BASE_REF
GITHUB_ENV /home/runner/work/_temp/_runner_file_commands/set_env_8a5d9de8-8eb1-4243-9ed5-2f12777608c5
GITHUB_EVENT_NAME schedule
GITHUB_EVENT_PATH /home/runner/work/_temp/_github_workflow/event.json
GITHUB_GRAPHQL_URL https://api.github.com/graphql
GITHUB_HEAD_REF
GITHUB_JOB main
GITHUB_OUTPUT /home/runner/work/_temp/_runner_file_commands/set_output_8a5d9de8-8eb1-4243-9ed5-2f12777608c5
GITHUB_PATH /home/runner/work/_temp/_runner_file_commands/add_path_8a5d9de8-8eb1-4243-9ed5-2f12777608c5
GITHUB_REF refs/heads/main
GITHUB_REF_NAME main
GITHUB_REF_PROTECTED false
GITHUB_REF_TYPE branch
GITHUB_REPOSITORY pharmaR/pharmapkgs
GITHUB_REPOSITORY_ID 798326913
GITHUB_REPOSITORY_OWNER
pharmaR
GITHUB_REPOSITORY_OWNER_ID
42115094
GITHUB_RETENTION_DAYS 90
GITHUB_RUN_ATTEMPT 1
GITHUB_RUN_ID 13490112215
GITHUB_RUN_NUMBER 104
GITHUB_SERVER_URL https://github.com
GITHUB_SHA 2e971f9a790dc34b5bf299a7a7ed36324aa48f21
GITHUB_STATE /home/runner/work/_temp/_runner_file_commands/save_state_8a5d9de8-8eb1-4243-9ed5-2f12777608c5
GITHUB_STEP_SUMMARY /home/runner/work/_temp/_runner_file_commands/step_summary_8a5d9de8-8eb1-4243-9ed5-2f12777608c5
GITHUB_TRIGGERING_ACTOR
llrs-roche
GITHUB_WORKFLOW Update package repositories
GITHUB_WORKFLOW_REF pharmaR/pharmapkgs/.github/workflows/update-repos.yml@refs/heads/main
GITHUB_WORKFLOW_SHA 2e971f9a790dc34b5bf299a7a7ed36324aa48f21
GITHUB_WORKSPACE /home/runner/work/pharmapkgs/pharmapkgs
GOROOT_1_21_X64 /opt/hostedtoolcache/go/1.21.13/x64
GOROOT_1_22_X64 /opt/hostedtoolcache/go/1.22.12/x64
GOROOT_1_23_X64 /opt/hostedtoolcache/go/1.23.6/x64
GRADLE_HOME /usr/share/gradle-8.12.1
HOME /home/runner
HOMEBREW_CLEANUP_PERIODIC_FULL_DAYS
3650
HOMEBREW_NO_AUTO_UPDATE
1
ImageOS ubuntu24
ImageVersion 20250209.1.0
INVOCATION_ID c9395881f9b8444fa7cb76954501ccf1
JAVA_HOME /usr/lib/jvm/temurin-17-jdk-amd64
JAVA_HOME_11_X64 /usr/lib/jvm/temurin-11-jdk-amd64
JAVA_HOME_17_X64 /usr/lib/jvm/temurin-17-jdk-amd64
JAVA_HOME_21_X64 /usr/lib/jvm/temurin-21-jdk-amd64
JAVA_HOME_8_X64 /usr/lib/jvm/temurin-8-jdk-amd64
JOURNAL_STREAM 8:6915
LANG C.UTF-8
LD_LIBRARY_PATH /opt/R/4.4.2/lib/R/lib:/usr/local/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/temurin-17-jdk-amd64/lib/server:/opt/R/4.4.2/lib/R/lib:/usr/local/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/temurin-17-jdk-amd64/lib/server
LN_S ln -s
LOGGER_LOG_LEVEL DEBUG
MAKE make
MEMORY_PRESSURE_WATCH /sys/fs/cgroup/system.slice/runner-provisioner.service/memory.pressure
MEMORY_PRESSURE_WRITE c29tZSAyMDAwMDAgMjAwMDAwMAA=
NOT_CRAN true
NVM_DIR /home/runner/.nvm
PAGER /usr/bin/pager
PATH /snap/bin:/home/runner/.local/bin:/opt/pipx_bin:/home/runner/.cargo/bin:/home/runner/.config/composer/vendor/bin:/usr/local/.ghcup/bin:/home/runner/.dotnet/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
PERFLOG_LOCATION_SETTING
RUNNER_PERFLOG
PHARMAPKGS_EXCLUDED_METRICS
assess_covr_coverage,assess_r_cmd_check
PHARMAPKGS_LIMIT 100
PHARMAPKGS_PLATFORM ubuntu-22.04
PHARMAPKGS_R_VERSION 4.4
PHARMAPKGS_REMOTE_REPO
https://cloud.r-project.org/
PIPX_BIN_DIR /opt/pipx_bin
PIPX_HOME /opt/pipx
PKGCACHE_HTTP_VERSION 2
PKGLOAD_PARENT_TEMPDIR
/tmp/RtmpAfKRIT
POWERSHELL_DISTRIBUTION_CHANNEL
GitHub-Actions-ubuntu24
PROCESSX_PS1d3a517363ca_1740367504
YES
PWD /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_BIN_PATH /opt/quarto/bin
QUARTO_DENO /opt/quarto/bin/tools/x86_64/deno
QUARTO_DOCUMENT_PATH /home/runner/work/pharmapkgs/pharmapkgs/inst/report
QUARTO_PROFILE
QUARTO_PROJECT_DIR /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_PROJECT_ROOT /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_ROOT /
QUARTO_SHARE_PATH /opt/quarto/share
R_ARCH
R_BROWSER xdg-open
R_BZIPCMD /usr/bin/bzip2
R_DOC_DIR /opt/R/4.4.2/lib/R/doc
R_GZIPCMD /usr/bin/gzip
R_HOME /opt/R/4.4.2/lib/R
R_INCLUDE_DIR /opt/R/4.4.2/lib/R/include
R_LIB_FOR_PAK /opt/R/4.4.2/lib/R/site-library
R_LIBS_SITE /opt/R/4.4.2/lib/R/site-library
R_LIBS_USER /home/runner/work/_temp/Library
R_PAPERSIZE letter
R_PAPERSIZE_USER letter
R_PDFVIEWER /usr/bin/xdg-open
R_PLATFORM x86_64-pc-linux-gnu
R_PRINTCMD /usr/bin/lpr
R_RD4PDF times,inconsolata,hyper
R_SESSION_TMPDIR /tmp/RtmpF4HWHv
R_SHARE_DIR /opt/R/4.4.2/lib/R/share
R_STRIP_SHARED_LIB strip --strip-unneeded
R_STRIP_STATIC_LIB strip --strip-debug
R_TEXI2DVICMD /usr/bin/texi2dvi
R_UNZIPCMD /usr/bin/unzip
R_ZIPCMD /usr/bin/zip
RUNNER_ARCH X64
RUNNER_ENVIRONMENT github-hosted
RUNNER_NAME GitHub Actions 8
RUNNER_OS Linux
RUNNER_PERFLOG /home/runner/perflog
RUNNER_TEMP /home/runner/work/_temp
RUNNER_TOOL_CACHE /opt/hostedtoolcache
RUNNER_TRACKING_ID github_2d087038-c77e-49c1-a34d-bc6ac90269e2
RUNNER_USER runner
RUNNER_WORKSPACE /home/runner/work/pharmapkgs
SED /usr/bin/sed
SELENIUM_JAR_PATH /usr/share/java/selenium-server.jar
SGX_AESM_ADDR 1
SHLVL 1
STATS_D true
STATS_D_D true
STATS_D_TC true
STATS_EXT true
STATS_EXTP https://provjobdprod.z13.web.core.windows.net/settings/provjobdsettings-latest/provjobd.data
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STATS_RDCL true
STATS_TRP true
STATS_UE true
STATS_V3PS true
STATS_VMD true
STATS_VMFE true
SWIFT_PATH /usr/share/swift/usr/bin
SYSTEMD_EXEC_PID 832
TAR /usr/bin/tar
TZ UTC
USER runner
VCPKG_INSTALLATION_ROOT
/usr/local/share/vcpkg
XDG_CONFIG_HOME /home/runner/.config
XDG_RUNTIME_DIR /run/user/1001These are the options set to generate the report:
$add.smooth
[1] TRUE
$bitmapType
[1] "cairo"
$browser
[1] "xdg-open"
$browserNLdisabled
[1] FALSE
$callr.condition_handler_cli_message
function (msg)
{
custom_handler <- getOption("cli.default_handler")
if (is.function(custom_handler)) {
custom_handler(msg)
}
else {
cli_server_default(msg)
}
}
<bytecode: 0x55b1130af910>
<environment: namespace:cli>
$catch.script.errors
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$CBoundsCheck
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$check.bounds
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$citation.bibtex.max
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$continue
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$contrasts
unordered ordered
"contr.treatment" "contr.poly"
$covr.record_tests
[1] TRUE
$defaultPackages
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$demo.ask
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$deparse.cutoff
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$device
function (width = 7, height = 7, ...)
{
grDevices::pdf(NULL, width, height, ...)
}
<bytecode: 0x55b11276a738>
<environment: namespace:knitr>
$device.ask.default
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$digits
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$dvipscmd
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$echo
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$editor
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$encoding
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$example.ask
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$expressions
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$help.search.types
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$help.try.all.packages
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$htmltools.preserve.raw
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$HTTPUserAgent
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$internet.info
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$keep.parse.data
[1] TRUE
$keep.parse.data.pkgs
[1] FALSE
$keep.source
[1] FALSE
$keep.source.pkgs
[1] FALSE
$knitr.in.progress
[1] TRUE
$locatorBell
[1] TRUE
$mailer
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$matprod
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$max.contour.segments
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$max.print
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$na.action
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$Ncpus
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$nwarnings
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$OutDec
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$pager
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$papersize
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$PCRE_limit_recursion
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$PCRE_study
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$PCRE_use_JIT
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$pdfviewer
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$pkgType
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$printcmd
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$prompt
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$repos
CRAN
"https://cran.rstudio.com"
$rl_word_breaks
[1] " \t\n\"\\'`><=%;,|&{()}"
$rlang_trace_top_env
<environment: R_GlobalEnv>
$scipen
[1] 0
$show.coef.Pvalues
[1] TRUE
$show.error.messages
[1] TRUE
$show.signif.stars
[1] TRUE
$showErrorCalls
[1] TRUE
$showNCalls
[1] 50
$showWarnCalls
[1] FALSE
$str
$str$strict.width
[1] "no"
$str$digits.d
[1] 3
$str$vec.len
[1] 4
$str$list.len
[1] 99
$str$deparse.lines
NULL
$str$drop.deparse.attr
[1] TRUE
$str$formatNum
function (x, ...)
format(x, trim = TRUE, drop0trailing = TRUE, ...)
<environment: 0x55b112587520>
$str.dendrogram.last
[1] "`"
$texi2dvi
[1] "/usr/bin/texi2dvi"
$tikzMetricsDictionary
[1] "validation_report_dataquieR_v2.5.0-tikzDictionary"
$timeout
[1] 60
$try.outFile
A connection with
description ""
class "file"
mode "w+b"
text "binary"
opened "opened"
can read "yes"
can write "yes"
$ts.eps
[1] 1e-05
$ts.S.compat
[1] FALSE
$unzip
[1] "/usr/bin/unzip"
$useFancyQuotes
[1] FALSE
$verbose
[1] FALSE
$warn
[1] 0
$warning.length
[1] 1000
$warnPartialMatchArgs
[1] FALSE
$warnPartialMatchAttr
[1] FALSE
$warnPartialMatchDollar
[1] FALSE
$width
[1] 80