Validation Report - collapse@2.1.0
Context
This report is fully automated and builds on rhub/ref-image image. Documents the installation of this package on an open source R environment, focusing on:
- Installation environment description
- Testing coverage
It is limited to assess whether unit tests and documentation are present and can execute without error. An assessment would be required that the tests and documentation are meaningful.
Package collapse
Metric based risk assessment
The following metrics are derived from the riskmetric R package.
| has_news | 1 |
| news_current | TRUE |
| exported_namespace | 382 |
| has_vignettes | 10 |
| export_help | 382 |
| has_website | TRUE |
| has_maintainer | Sebastian Krantz sebastian.krantz@graduateinstitute.ch |
| bugs_status | 0.9666667 |
| assess_size_codebase | 11039 |
| has_source_control | https://github.com/SebKrantz/collapse |
| has_bug_reports_url | 1 |
| downloads_1yr | 364711 |
| reverse_dependencies | 45 |
| has_examples | 0.8888889 |
| dependencies | 2 |
| license | GPL (>= 2) | file LICENSE |
Package general assessment: Coverage, check results, size, download the last year, reverse dependencies and number of dependencies.
Dependencies
Overall the package has these dependencies:
| package | type | |
|---|---|---|
| 1 | Rcpp (>= 1.0.1) | Imports |
| 2 | Rcpp | LinkingTo |
Package dependencies
Reverse dependencies
Overall the package has 45 reverse dependencies:
africamonitor, amadeus, aorsf, arcgisutils, bayestestR, blocs, bsitar, cheapr, ctsem, deduped, DepecheR, dfadjust, dfms, dggridR, DisImpact, easystats, effectplots, fastdid, fastplyr, fastverse, FuncDiv, joyn, labelr, marginaleffects, modelbased, multistateQTL, mvgam, ordbetareg, osmclass, PakNAcc, penppml, PiC, plm, QTLExperiment, report, samadb, see, SGP, summclust, timeplyr, tinycodet, ugatsdb, versus, VizTest, zoomerjoin
Namespace
Overall the package has 382 exported objects. 362 are documented:
.c .COLLAPSE_ALL .COLLAPSE_DATA
TRUE TRUE TRUE
.COLLAPSE_GENERIC .COLLAPSE_OLD .COLLAPSE_TOPICS
TRUE TRUE TRUE
.FAST_FUN .FAST_STAT_FUN .OPERATOR_FUN
TRUE TRUE TRUE
.quantile .range %-=%
TRUE TRUE FALSE
%!=% %!iin% %!in%
FALSE FALSE FALSE
%*=% %/=% %+=%
FALSE FALSE FALSE
%=% %==% %c-%
FALSE FALSE FALSE
%c*% %c/% %c+%
FALSE FALSE FALSE
%cr% %iin% %r-%
FALSE FALSE FALSE
%r*% %r/% %r+%
FALSE FALSE FALSE
%rr% add_stub add_vars
FALSE TRUE TRUE
add_vars<- all_funs all_identical
TRUE TRUE TRUE
all_obj_equal allNA alloc
TRUE TRUE TRUE
allv any_duplicated anyv
TRUE TRUE TRUE
as_character_factor as_factor_GRP as_factor_qG
TRUE TRUE TRUE
as_integer_factor as_numeric_factor atomic_elem
TRUE TRUE TRUE
atomic_elem<- av av<-
TRUE TRUE TRUE
B BY BY.data.frame
TRUE TRUE TRUE
BY.default BY.matrix cat_vars
TRUE TRUE TRUE
cat_vars<- char_vars char_vars<-
TRUE TRUE TRUE
cinv ckmatch collap
TRUE TRUE TRUE
collapg collapv colorder
TRUE TRUE TRUE
colorderv copyAttrib copyMostAttrib
TRUE TRUE TRUE
copyv D dapply
TRUE TRUE TRUE
date_vars date_vars<- descr
TRUE TRUE TRUE
descr.default Dlog fact_vars
TRUE TRUE TRUE
fact_vars<- fbetween fbetween.data.frame
TRUE TRUE TRUE
fbetween.default fbetween.matrix fcompute
TRUE TRUE TRUE
fcomputev fcount fcountv
TRUE TRUE TRUE
fcumsum fcumsum.data.frame fcumsum.default
TRUE TRUE TRUE
fcumsum.matrix fdiff fdiff.data.frame
TRUE TRUE TRUE
fdiff.default fdiff.matrix fdim
TRUE TRUE TRUE
fdist fdroplevels fdroplevels.data.frame
TRUE TRUE TRUE
fdroplevels.factor fduplicated ffirst
TRUE TRUE TRUE
ffirst.data.frame ffirst.default ffirst.matrix
TRUE TRUE TRUE
fFtest fFtest.default fgroup_by
TRUE TRUE TRUE
fgroup_vars fgrowth fgrowth.data.frame
TRUE TRUE TRUE
fgrowth.default fgrowth.matrix fhdbetween
TRUE TRUE TRUE
fHDbetween fhdbetween.data.frame fhdbetween.default
TRUE TRUE TRUE
fhdbetween.matrix fhdwithin fHDwithin
TRUE TRUE TRUE
fhdwithin.data.frame fhdwithin.default fhdwithin.matrix
TRUE TRUE TRUE
findex findex_by finteraction
TRUE TRUE TRUE
flag flag.data.frame flag.default
TRUE TRUE TRUE
flag.matrix flast flast.data.frame
TRUE TRUE TRUE
flast.default flast.matrix flm
TRUE TRUE TRUE
flm.default fmatch fmax
TRUE TRUE TRUE
fmax.data.frame fmax.default fmax.matrix
TRUE TRUE TRUE
fmean fmean.data.frame fmean.default
TRUE TRUE TRUE
fmean.matrix fmedian fmedian.data.frame
TRUE TRUE TRUE
fmedian.default fmedian.matrix fmin
TRUE TRUE TRUE
fmin.data.frame fmin.default fmin.matrix
TRUE TRUE TRUE
fmode fmode.data.frame fmode.default
TRUE TRUE TRUE
fmode.matrix fmutate fncol
TRUE TRUE TRUE
fndistinct fNdistinct fndistinct.data.frame
TRUE TRUE TRUE
fndistinct.default fndistinct.matrix fnlevels
TRUE TRUE TRUE
fnobs fNobs fnobs.data.frame
TRUE TRUE TRUE
fnobs.default fnobs.matrix fnrow
TRUE TRUE TRUE
fnth fnth.data.frame fnth.default
TRUE TRUE TRUE
fnth.matrix fnunique fprod
TRUE TRUE TRUE
fprod.data.frame fprod.default fprod.matrix
TRUE TRUE TRUE
fquantile frange frename
TRUE TRUE TRUE
fscale fscale.data.frame fscale.default
TRUE TRUE TRUE
fscale.matrix fsd fsd.data.frame
TRUE TRUE TRUE
fsd.default fsd.matrix fselect
TRUE TRUE TRUE
fselect<- fslice fslicev
TRUE TRUE TRUE
fsubset fsubset.data.frame fsubset.default
TRUE TRUE TRUE
fsubset.matrix fsum fsum.data.frame
TRUE TRUE TRUE
fsum.default fsum.matrix fsummarise
TRUE TRUE TRUE
fsummarize ftransform ftransform<-
TRUE TRUE TRUE
ftransformv fungroup funique
TRUE TRUE TRUE
funique.data.frame funique.default fvar
TRUE TRUE TRUE
fvar.data.frame fvar.default fvar.matrix
TRUE TRUE TRUE
fwithin fwithin.data.frame fwithin.default
TRUE TRUE TRUE
fwithin.matrix G gby
TRUE TRUE TRUE
get_collapse get_elem get_vars
TRUE TRUE TRUE
get_vars<- greorder group
TRUE TRUE TRUE
group_by_vars groupid groupv
TRUE TRUE TRUE
GRP GRP.default GRPid
TRUE TRUE TRUE
GRPN GRPnames gsplit
TRUE TRUE TRUE
gv gv<- gvr
TRUE TRUE TRUE
gvr<- has_elem HDB
TRUE TRUE TRUE
HDW iby irreg_elem
TRUE TRUE TRUE
is_categorical is_date is_GRP
TRUE TRUE TRUE
is_irregular is_qG is_unlistable
TRUE TRUE TRUE
itn ix join
TRUE TRUE TRUE
L ldepth list_elem
TRUE TRUE TRUE
list_elem<- logi_vars logi_vars<-
TRUE TRUE TRUE
massign mctl missing_cases
TRUE TRUE TRUE
mrtl mtt na_focb
TRUE TRUE TRUE
na_insert na_locf na_omit
TRUE TRUE TRUE
na_rm namlab num_vars
TRUE TRUE TRUE
num_vars<- nv nv<-
TRUE TRUE TRUE
pad pivot plot.psmat
TRUE TRUE TRUE
print.pwcor print.pwcov print.qsu
TRUE TRUE TRUE
psacf psacf.data.frame psacf.default
TRUE TRUE TRUE
psccf psccf.default psmat
TRUE TRUE TRUE
psmat.data.frame psmat.default pspacf
TRUE TRUE TRUE
pspacf.data.frame pspacf.default pwcor
TRUE TRUE TRUE
pwcov pwnobs qDF
TRUE TRUE TRUE
qDT qF qG
TRUE TRUE TRUE
qM qsu qsu.data.frame
TRUE TRUE TRUE
qsu.default qsu.matrix qtab
TRUE TRUE TRUE
qtable qTBL radixorder
TRUE TRUE TRUE
radixorderv rapply2d recode_char
TRUE TRUE TRUE
recode_num reg_elem reindex
TRUE TRUE TRUE
relabel replace_inf replace_Inf
TRUE TRUE TRUE
replace_na replace_NA replace_outliers
TRUE TRUE TRUE
rm_stub rnm rowbind
TRUE TRUE TRUE
roworder roworderv rsplit
TRUE TRUE TRUE
rsplit.data.frame rsplit.default rsplit.matrix
TRUE TRUE TRUE
sbt seq_col seq_row
TRUE TRUE TRUE
seqid set_collapse setattrib
TRUE TRUE TRUE
setAttrib setColnames setDimnames
TRUE TRUE TRUE
setLabels setop setrelabel
TRUE TRUE TRUE
setrename setRownames settfm
TRUE TRUE TRUE
settfmv setTRA settransform
TRUE TRUE TRUE
settransformv setv slt
TRUE TRUE TRUE
slt<- smr ss
TRUE TRUE TRUE
STD t_list tfm
TRUE TRUE TRUE
tfm<- tfmv timeid
TRUE TRUE TRUE
to_plm TRA TRA.data.frame
TRUE TRUE TRUE
TRA.default TRA.matrix unattrib
TRUE TRUE TRUE
unindex unlist2d varying
TRUE TRUE TRUE
varying.data.frame varying.default varying.matrix
TRUE TRUE TRUE
vclasses vec vgcd
TRUE TRUE TRUE
vlabels vlabels<- vlengths
TRUE TRUE TRUE
vtypes W whichNA
TRUE TRUE TRUE
whichv
TRUE Examples
There are 72 help pages with examples, from 81 (88.89 %).
NEWS
The package has NEWS file and it is current.
License
The package uses .
Installation environment
System Info
| Field | Value |
|---|---|
| Image | rhub/ref-image |
| OS | Ubuntu 24.04.2 LTS |
| Platform | x86_64-pc-linux-gnu |
| System | x86_64, linux-gnu |
| Execution Time | 2025-03-14 03:28:57 UTC |
System information. Table about the system used to check the package.
R Session Info
Information about the R environment and capabilities:
R version 4.4.3 (2025-02-28)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 24.04.2 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so; LAPACK version 3.12.0
locale:
[1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8
[4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8
[7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C
time zone: UTC
tzcode source: system (glibc)
attached base packages:
[1] tools stats graphics grDevices utils datasets methods
[8] base
loaded via a namespace (and not attached):
[1] riskreports_0.0.0.9003 compiler_4.4.3 fastmap_1.2.0
[4] cli_3.6.4 htmltools_0.5.8.1 yaml_2.3.10
[7] rmarkdown_2.29 knitr_1.49 jsonlite_1.9.1
[10] xfun_0.51 digest_0.6.37 rlang_1.1.5
[13] evaluate_1.0.3 Platform used:
OS.type file.sep dynlib.ext GUI endian pkgType path.sep
"unix" "/" ".so" "X11" "little" "source" ":"
r_arch
"" R’s capabilities:
jpeg png tiff tcltk X11 aqua
TRUE TRUE TRUE TRUE FALSE FALSE
http/ftp sockets libxml fifo cledit iconv
TRUE TRUE FALSE TRUE FALSE TRUE
NLS Rprof profmem cairo ICU long.double
TRUE TRUE TRUE TRUE TRUE TRUE
libcurl
TRUE External software:
zlib
"1.3"
bzlib
"1.0.8, 13-Jul-2019"
xz
"5.4.5"
libdeflate
"1.19"
PCRE
"10.42 2022-12-11"
ICU
"74.2"
TRE
"TRE 0.8.0 R_fixes (BSD)"
iconv
"glibc 2.39"
readline
"8.2"
BLAS
"/usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3" Graphics external software:
cairo cairoFT pango
"1.18.0" "" "1.52.1"
libpng jpeg libtiff
"1.6.43" "8.0" "LIBTIFF, Version 4.5.1" Numerical characteristics of the machine:
double.eps double.neg.eps double.xmin
2.220446e-16 1.110223e-16 2.225074e-308
double.xmax double.base double.digits
1.797693e+308 2.000000e+00 5.300000e+01
double.rounding double.guard double.ulp.digits
5.000000e+00 0.000000e+00 -5.200000e+01
double.neg.ulp.digits double.exponent double.min.exp
-5.300000e+01 1.100000e+01 -1.022000e+03
double.max.exp integer.max sizeof.long
1.024000e+03 2.147484e+09 8.000000e+00
sizeof.longlong sizeof.longdouble sizeof.pointer
8.000000e+00 1.600000e+01 8.000000e+00
sizeof.time_t longdouble.eps longdouble.neg.eps
8.000000e+00 1.084202e-19 5.421011e-20
longdouble.digits longdouble.rounding longdouble.guard
6.400000e+01 5.000000e+00 0.000000e+00
longdouble.ulp.digits longdouble.neg.ulp.digits longdouble.exponent
-6.300000e+01 -6.400000e+01 1.500000e+01
longdouble.min.exp longdouble.max.exp
-1.638200e+04 1.638400e+04 Random number generation process:
[1] "Mersenne-Twister" "Inversion" "Rejection" Information about the environment
Environmental and options variables affect how package checks and software in it might behave. Here is the environmental variables when running this report
_R_CHECK_SYSTEM_CLOCK_
FALSE
ACCEPT_EULA Y
ACTIONS_RUNNER_ACTION_ARCHIVE_CACHE
/opt/actionarchivecache
AGENT_TOOLSDIRECTORY /opt/hostedtoolcache
ANDROID_HOME /usr/local/lib/android/sdk
ANDROID_NDK /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_HOME /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_LATEST_HOME
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ANDROID_NDK_ROOT /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_SDK_ROOT /usr/local/lib/android/sdk
ANT_HOME /usr/share/ant
AZURE_EXTENSION_DIR /opt/az/azcliextensions
BOOTSTRAP_HASKELL_NONINTERACTIVE
1
BUNDLE_EXT linux-amd64.deb
CHROME_BIN /usr/bin/google-chrome
CHROMEWEBDRIVER /usr/local/share/chromedriver-linux64
CI true
CONDA /usr/share/miniconda
DEBIAN_FRONTEND noninteractive
DENO_DOM_PLUGIN /opt/quarto/bin/tools/x86_64/deno_dom/libplugin.so
DENO_NO_UPDATE_CHECK 1
DENO_TLS_CA_STORE system,mozilla
DEPLOYMENT_BASEPATH /opt/runner
DOTNET_MULTILEVEL_LOOKUP
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DOTNET_NOLOGO 1
DOTNET_SKIP_FIRST_TIME_EXPERIENCE
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EDGEWEBDRIVER /usr/local/share/edge_driver
EDITOR vi
GECKOWEBDRIVER /usr/local/share/gecko_driver
GHCUP_INSTALL_BASE_PREFIX
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GITHUB_ACTION __run_2
GITHUB_ACTION_REF
GITHUB_ACTION_REPOSITORY
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GITHUB_ACTOR llrs-roche
GITHUB_ACTOR_ID 185338939
GITHUB_API_URL https://api.github.com
GITHUB_BASE_REF
GITHUB_ENV /home/runner/work/_temp/_runner_file_commands/set_env_35fa6bbb-61f7-46c6-bfa7-b11c9a45dd6b
GITHUB_EVENT_NAME schedule
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GITHUB_GRAPHQL_URL https://api.github.com/graphql
GITHUB_HEAD_REF
GITHUB_JOB main
GITHUB_OUTPUT /home/runner/work/_temp/_runner_file_commands/set_output_35fa6bbb-61f7-46c6-bfa7-b11c9a45dd6b
GITHUB_PATH /home/runner/work/_temp/_runner_file_commands/add_path_35fa6bbb-61f7-46c6-bfa7-b11c9a45dd6b
GITHUB_REF refs/heads/main
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GITHUB_REF_PROTECTED false
GITHUB_REF_TYPE branch
GITHUB_REPOSITORY pharmaR/pharmapkgs
GITHUB_REPOSITORY_ID 798326913
GITHUB_REPOSITORY_OWNER
pharmaR
GITHUB_REPOSITORY_OWNER_ID
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GITHUB_RETENTION_DAYS 90
GITHUB_RUN_ATTEMPT 1
GITHUB_RUN_ID 13849192039
GITHUB_RUN_NUMBER 128
GITHUB_SERVER_URL https://github.com
GITHUB_SHA cd2aa3d897be31c10b200e93da24712e8b0fbab1
GITHUB_STATE /home/runner/work/_temp/_runner_file_commands/save_state_35fa6bbb-61f7-46c6-bfa7-b11c9a45dd6b
GITHUB_STEP_SUMMARY /home/runner/work/_temp/_runner_file_commands/step_summary_35fa6bbb-61f7-46c6-bfa7-b11c9a45dd6b
GITHUB_TRIGGERING_ACTOR
llrs-roche
GITHUB_WORKFLOW Update package repositories
GITHUB_WORKFLOW_REF pharmaR/pharmapkgs/.github/workflows/update-repos.yml@refs/heads/main
GITHUB_WORKFLOW_SHA cd2aa3d897be31c10b200e93da24712e8b0fbab1
GITHUB_WORKSPACE /home/runner/work/pharmapkgs/pharmapkgs
GOROOT_1_21_X64 /opt/hostedtoolcache/go/1.21.13/x64
GOROOT_1_22_X64 /opt/hostedtoolcache/go/1.22.12/x64
GOROOT_1_23_X64 /opt/hostedtoolcache/go/1.23.7/x64
GRADLE_HOME /usr/share/gradle-8.13
HOME /home/runner
HOMEBREW_CLEANUP_PERIODIC_FULL_DAYS
3650
HOMEBREW_NO_AUTO_UPDATE
1
ImageOS ubuntu24
ImageVersion 20250309.1.0
INVOCATION_ID 9d113ec6dfde453695a0e16866091f43
JAVA_HOME /usr/lib/jvm/temurin-17-jdk-amd64
JAVA_HOME_11_X64 /usr/lib/jvm/temurin-11-jdk-amd64
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JAVA_HOME_21_X64 /usr/lib/jvm/temurin-21-jdk-amd64
JAVA_HOME_8_X64 /usr/lib/jvm/temurin-8-jdk-amd64
JOURNAL_STREAM 8:6519
LANG C.UTF-8
LD_LIBRARY_PATH /opt/R/4.4.3/lib/R/lib:/usr/local/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/temurin-17-jdk-amd64/lib/server:/opt/R/4.4.3/lib/R/lib:/usr/local/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/temurin-17-jdk-amd64/lib/server
LN_S ln -s
LOGGER_LOG_LEVEL DEBUG
MAKE make
MEMORY_PRESSURE_WATCH /sys/fs/cgroup/system.slice/runner-provisioner.service/memory.pressure
MEMORY_PRESSURE_WRITE c29tZSAyMDAwMDAgMjAwMDAwMAA=
NOT_CRAN true
NVM_DIR /home/runner/.nvm
PAGER /usr/bin/pager
PATH /snap/bin:/home/runner/.local/bin:/opt/pipx_bin:/home/runner/.cargo/bin:/home/runner/.config/composer/vendor/bin:/usr/local/.ghcup/bin:/home/runner/.dotnet/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
PERFLOG_LOCATION_SETTING
RUNNER_PERFLOG
PHARMAPKGS_EXCLUDED_METRICS
assess_covr_coverage,assess_r_cmd_check
PHARMAPKGS_LIMIT 100
PHARMAPKGS_PLATFORM ubuntu-22.04
PHARMAPKGS_R_VERSION 4.4
PHARMAPKGS_REMOTE_REPO
https://cloud.r-project.org/
PIPX_BIN_DIR /opt/pipx_bin
PIPX_HOME /opt/pipx
PKGCACHE_HTTP_VERSION 2
PKGLOAD_PARENT_TEMPDIR
/tmp/Rtmp41A9Dr
POWERSHELL_DISTRIBUTION_CHANNEL
GitHub-Actions-ubuntu24
PROCESSX_PS1d7474e18e2_1741922933
YES
PWD /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_BIN_PATH /opt/quarto/bin
QUARTO_DENO /opt/quarto/bin/tools/x86_64/deno
QUARTO_DOCUMENT_PATH /home/runner/work/pharmapkgs/pharmapkgs/inst/report
QUARTO_PROFILE
QUARTO_PROJECT_DIR /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_PROJECT_ROOT /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_ROOT /
QUARTO_SHARE_PATH /opt/quarto/share
R_ARCH
R_BROWSER xdg-open
R_BZIPCMD /usr/bin/bzip2
R_DOC_DIR /opt/R/4.4.3/lib/R/doc
R_GZIPCMD /usr/bin/gzip
R_HOME /opt/R/4.4.3/lib/R
R_INCLUDE_DIR /opt/R/4.4.3/lib/R/include
R_LIB_FOR_PAK /opt/R/4.4.3/lib/R/site-library
R_LIBS_SITE /opt/R/4.4.3/lib/R/site-library
R_LIBS_USER /home/runner/work/_temp/Library
R_PAPERSIZE letter
R_PAPERSIZE_USER letter
R_PDFVIEWER /usr/bin/xdg-open
R_PLATFORM x86_64-pc-linux-gnu
R_PRINTCMD /usr/bin/lpr
R_RD4PDF times,inconsolata,hyper
R_SESSION_TMPDIR /tmp/Rtmpjl3d6a
R_SHARE_DIR /opt/R/4.4.3/lib/R/share
R_STRIP_SHARED_LIB strip --strip-unneeded
R_STRIP_STATIC_LIB strip --strip-debug
R_TEXI2DVICMD /usr/bin/texi2dvi
R_UNZIPCMD /usr/bin/unzip
R_ZIPCMD /usr/bin/zip
RUNNER_ARCH X64
RUNNER_ENVIRONMENT github-hosted
RUNNER_NAME GitHub-Actions-1000000483
RUNNER_OS Linux
RUNNER_PERFLOG /home/runner/perflog
RUNNER_TEMP /home/runner/work/_temp
RUNNER_TOOL_CACHE /opt/hostedtoolcache
RUNNER_TRACKING_ID github_935ddd69-831d-48e1-b9b2-8be6628fe0df
RUNNER_USER runner
RUNNER_WORKSPACE /home/runner/work/pharmapkgs
SED /usr/bin/sed
SELENIUM_JAR_PATH /usr/share/java/selenium-server.jar
SGX_AESM_ADDR 1
SHLVL 1
STATS_D true
STATS_D_D true
STATS_D_TC true
STATS_EXT true
STATS_EXTP https://provjobdprod.z13.web.core.windows.net/settings/provjobdsettings-latest/provjobd.data
STATS_PIP false
STATS_RDCL true
STATS_TRP true
STATS_UE true
STATS_V3PS true
STATS_VMD true
STATS_VMFE true
SWIFT_PATH /usr/share/swift/usr/bin
SYSTEMD_EXEC_PID 831
TAR /usr/bin/tar
TZ UTC
USER runner
VCPKG_INSTALLATION_ROOT
/usr/local/share/vcpkg
XDG_CONFIG_HOME /home/runner/.config
XDG_RUNTIME_DIR /run/user/1001These are the options set to generate the report:
$add.smooth
[1] TRUE
$bitmapType
[1] "cairo"
$browser
[1] "xdg-open"
$browserNLdisabled
[1] FALSE
$callr.condition_handler_cli_message
function (msg)
{
custom_handler <- getOption("cli.default_handler")
if (is.function(custom_handler)) {
custom_handler(msg)
}
else {
cli_server_default(msg)
}
}
<bytecode: 0x55d448a20330>
<environment: namespace:cli>
$catch.script.errors
[1] FALSE
$CBoundsCheck
[1] FALSE
$check.bounds
[1] FALSE
$citation.bibtex.max
[1] 1
$continue
[1] "+ "
$contrasts
unordered ordered
"contr.treatment" "contr.poly"
$covr.record_tests
[1] TRUE
$defaultPackages
[1] "datasets" "utils" "grDevices" "graphics" "stats" "methods"
$demo.ask
[1] "default"
$deparse.cutoff
[1] 60
$device
function (width = 7, height = 7, ...)
{
grDevices::pdf(NULL, width, height, ...)
}
<bytecode: 0x55d447f04f38>
<environment: namespace:knitr>
$device.ask.default
[1] FALSE
$digits
[1] 7
$dvipscmd
[1] "dvips"
$echo
[1] FALSE
$editor
[1] "vi"
$encoding
[1] "native.enc"
$example.ask
[1] "default"
$expressions
[1] 5000
$help.search.types
[1] "vignette" "demo" "help"
$help.try.all.packages
[1] FALSE
$htmltools.preserve.raw
[1] TRUE
$HTTPUserAgent
[1] "R/4.4.3 R (4.4.3 x86_64-pc-linux-gnu x86_64 linux-gnu) on GitHub Actions"
$internet.info
[1] 2
$keep.parse.data
[1] TRUE
$keep.parse.data.pkgs
[1] FALSE
$keep.source
[1] FALSE
$keep.source.pkgs
[1] FALSE
$knitr.in.progress
[1] TRUE
$locatorBell
[1] TRUE
$mailer
[1] "mailto"
$matprod
[1] "default"
$max.contour.segments
[1] 25000
$max.print
[1] 99999
$menu.graphics
[1] TRUE
$na.action
[1] "na.omit"
$Ncpus
[1] 1
$nwarnings
[1] 50
$OutDec
[1] "."
$pager
[1] "/opt/R/4.4.3/lib/R/bin/pager"
$papersize
[1] "letter"
$PCRE_limit_recursion
[1] NA
$PCRE_study
[1] FALSE
$PCRE_use_JIT
[1] TRUE
$pdfviewer
[1] "/usr/bin/xdg-open"
$pkgType
[1] "source"
$printcmd
[1] "/usr/bin/lpr"
$prompt
[1] "> "
$repos
CRAN
"https://cran.rstudio.com"
$rl_word_breaks
[1] " \t\n\"\\'`><=%;,|&{()}"
$rlang_trace_top_env
<environment: R_GlobalEnv>
$scipen
[1] 0
$show.coef.Pvalues
[1] TRUE
$show.error.messages
[1] TRUE
$show.signif.stars
[1] TRUE
$showErrorCalls
[1] TRUE
$showNCalls
[1] 50
$showWarnCalls
[1] FALSE
$str
$str$strict.width
[1] "no"
$str$digits.d
[1] 3
$str$vec.len
[1] 4
$str$list.len
[1] 99
$str$deparse.lines
NULL
$str$drop.deparse.attr
[1] TRUE
$str$formatNum
function (x, ...)
format(x, trim = TRUE, drop0trailing = TRUE, ...)
<environment: 0x55d447efb688>
$str.dendrogram.last
[1] "`"
$texi2dvi
[1] "/usr/bin/texi2dvi"
$tikzMetricsDictionary
[1] "validation_report_collapse_v2.1.0-tikzDictionary"
$timeout
[1] 60
$try.outFile
A connection with
description ""
class "file"
mode "w+b"
text "binary"
opened "opened"
can read "yes"
can write "yes"
$ts.eps
[1] 1e-05
$ts.S.compat
[1] FALSE
$unzip
[1] "/usr/bin/unzip"
$useFancyQuotes
[1] FALSE
$verbose
[1] FALSE
$warn
[1] 0
$warning.length
[1] 1000
$warnPartialMatchArgs
[1] FALSE
$warnPartialMatchAttr
[1] FALSE
$warnPartialMatchDollar
[1] FALSE
$width
[1] 80