Validation Report - cmsafops@1.4.0
Context
This report is fully automated and builds on rhub/ref-image image. Documents the installation of this package on an open source R environment, focusing on:
- Installation environment description
- Testing coverage
It is limited to assess whether unit tests and documentation are present and can execute without error. An assessment would be required that the tests and documentation are meaningful.
Package cmsafops
Metric based risk assessment
The following metrics are derived from the riskmetric R package.
| has_news | 1 |
| news_current | TRUE |
| exported_namespace | 151 |
| has_vignettes | 0 |
| export_help | 151 |
| has_website | TRUE |
| has_maintainer | Steffen Kothe Steffen.Kothe@dwd.de |
| bugs_status | subscript out of bounds |
| has_bug_reports_url | 1 |
| downloads_1yr | 9083 |
| reverse_dependencies | 2 |
| has_examples | 1 |
| dependencies | 10 |
| license | GPL (>= 3) |
Package general assessment: Coverage, check results, size, download the last year, reverse dependencies and number of dependencies.
Dependencies
Overall the package has these dependencies:
| package | type | |
|---|---|---|
| 1 | assertthat (>= 0.2.1) | Imports |
| 2 | fields (>= 10.3) | Imports |
| 3 | FNN (>= 1.1) | Imports |
| 4 | ncdf4 (>= 1.17) | Imports |
| 5 | rainfarmr (>= 0.1) | Imports |
| 6 | raster (>= 3.0) | Imports |
| 7 | progress | Imports |
| 8 | trend | Imports |
| 9 | SearchTrees | Imports |
| 10 | utils | Imports |
Package dependencies
Reverse dependencies
Overall the package has 2 reverse dependencies:
cmsaf, cmsafvis
Namespace
Overall the package has 151 exported objects. 151 are documented:
acsaf_box_mergetime add_grid_info
TRUE TRUE
box_mergetime calc_allDatesNc
TRUE TRUE
calc_overlapping_time calc_timestepNc
TRUE TRUE
change_att check.coordinate.system
TRUE TRUE
cmsaf.abs cmsaf.add
TRUE TRUE
cmsaf.addc cmsaf.adjust.two.files
TRUE TRUE
cmsaf.cat cmsaf.detrend
TRUE TRUE
cmsaf.div cmsaf.divc
TRUE TRUE
cmsaf.mk.test cmsaf.mul
TRUE TRUE
cmsaf.mulc cmsaf.regres
TRUE TRUE
cmsaf.stats cmsaf.stats.station.data
TRUE TRUE
cmsaf.sub cmsaf.sub.rel
TRUE TRUE
cmsaf.subc cmsaf.transform.coordinate.system
TRUE TRUE
dayavg daymax
TRUE TRUE
daymean daymin
TRUE TRUE
daypctl dayrange
TRUE TRUE
daysd daysum
TRUE TRUE
dayvar divdpm
TRUE TRUE
extract.level extract.period
TRUE TRUE
fldcor fldcovar
TRUE TRUE
fldmax fldmean
TRUE TRUE
fldmin fldrange
TRUE TRUE
fldsd fldsum
TRUE TRUE
get_basename get_date_time
TRUE TRUE
get_dimensions get_nc_version
TRUE TRUE
get_processing_time_string get_time
TRUE TRUE
get_time_info gridboxmax
TRUE TRUE
gridboxmean gridboxmin
TRUE TRUE
gridboxrange gridboxsd
TRUE TRUE
gridboxsum gridboxvar
TRUE TRUE
hourmean hoursum
TRUE TRUE
levbox_mergetime map_regular
TRUE TRUE
mermean mon_num_above
TRUE TRUE
mon_num_below mon_num_equal
TRUE TRUE
mon.anomaly mon.anomaly.climatology
TRUE TRUE
monavg mondaymean
TRUE TRUE
monmax monmean
TRUE TRUE
monmin monpctl
TRUE TRUE
monsd monsum
TRUE TRUE
monvar muldpm
TRUE TRUE
multimonmean multimonsum
TRUE TRUE
ncinfo num_above
TRUE TRUE
num_below num_equal
TRUE TRUE
read_file read_ncvar
TRUE TRUE
remap runmax
TRUE TRUE
runmean runmin
TRUE TRUE
runrange runsd
TRUE TRUE
runsum seas.anomaly
TRUE TRUE
seasmean seassd
TRUE TRUE
seassum seasvar
TRUE TRUE
sellonlatbox selmon
TRUE TRUE
selperiod selpoint
TRUE TRUE
selpoint.multi seltime
TRUE TRUE
selyear timavg
TRUE TRUE
timcor timcovar
TRUE TRUE
timcumsum timmax
TRUE TRUE
timmean timmin
TRUE TRUE
timpctl timsd
TRUE TRUE
timselmean timselsum
TRUE TRUE
timsum trend
TRUE TRUE
trend_advanced wfldmean
TRUE TRUE
ydaymax ydaymean
TRUE TRUE
ydaymin ydayrange
TRUE TRUE
ydaysd ydaysum
TRUE TRUE
ydrunmean ydrunsd
TRUE TRUE
ydrunsum year.anomaly
TRUE TRUE
yearmax yearmean
TRUE TRUE
yearmin yearrange
TRUE TRUE
yearsd yearsum
TRUE TRUE
yearvar ymonmax
TRUE TRUE
ymonmean ymonmedian
TRUE TRUE
ymonmin ymonsd
TRUE TRUE
ymonsum yseasmax
TRUE TRUE
yseasmean yseasmin
TRUE TRUE
yseassd zonmean
TRUE TRUE
zonsum
TRUE Examples
There are 151 help pages with examples, from 151 (100.00 %).
NEWS
The package has NEWS file and it is current.
License
The package uses .
Installation environment
System Info
| Field | Value |
|---|---|
| Image | rhub/ref-image |
| OS | Ubuntu 24.04.1 LTS |
| Platform | x86_64-pc-linux-gnu |
| System | x86_64, linux-gnu |
| Execution Time | 2025-02-16 04:46:09 UTC |
System information. Table about the system used to check the package.
R Session Info
Information about the R environment and capabilities:
R version 4.4.2 (2024-10-31)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 24.04.1 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so; LAPACK version 3.12.0
locale:
[1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8
[4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8
[7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C
time zone: UTC
tzcode source: system (glibc)
attached base packages:
[1] tools stats graphics grDevices utils datasets methods
[8] base
loaded via a namespace (and not attached):
[1] riskreports_0.0.0.9003 compiler_4.4.2 fastmap_1.2.0
[4] cli_3.6.4 htmltools_0.5.8.1 yaml_2.3.10
[7] rmarkdown_2.29 knitr_1.49 jsonlite_1.8.9
[10] xfun_0.50 digest_0.6.37 rlang_1.1.5
[13] evaluate_1.0.3 Platform used:
OS.type file.sep dynlib.ext GUI endian pkgType path.sep
"unix" "/" ".so" "X11" "little" "source" ":"
r_arch
"" R’s capabilities:
jpeg png tiff tcltk X11 aqua
TRUE TRUE TRUE TRUE FALSE FALSE
http/ftp sockets libxml fifo cledit iconv
TRUE TRUE FALSE TRUE FALSE TRUE
NLS Rprof profmem cairo ICU long.double
TRUE TRUE TRUE TRUE TRUE TRUE
libcurl
TRUE External software:
zlib
"1.3"
bzlib
"1.0.8, 13-Jul-2019"
xz
"5.4.5"
libdeflate
"1.19"
PCRE
"10.42 2022-12-11"
ICU
"74.2"
TRE
"TRE 0.8.0 R_fixes (BSD)"
iconv
"glibc 2.39"
readline
"8.2"
BLAS
"/usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3" Graphics external software:
cairo cairoFT pango
"1.18.0" "" "1.52.1"
libpng jpeg libtiff
"1.6.43" "8.0" "LIBTIFF, Version 4.5.1" Numerical characteristics of the machine:
double.eps double.neg.eps double.xmin
2.220446e-16 1.110223e-16 2.225074e-308
double.xmax double.base double.digits
1.797693e+308 2.000000e+00 5.300000e+01
double.rounding double.guard double.ulp.digits
5.000000e+00 0.000000e+00 -5.200000e+01
double.neg.ulp.digits double.exponent double.min.exp
-5.300000e+01 1.100000e+01 -1.022000e+03
double.max.exp integer.max sizeof.long
1.024000e+03 2.147484e+09 8.000000e+00
sizeof.longlong sizeof.longdouble sizeof.pointer
8.000000e+00 1.600000e+01 8.000000e+00
sizeof.time_t longdouble.eps longdouble.neg.eps
8.000000e+00 1.084202e-19 5.421011e-20
longdouble.digits longdouble.rounding longdouble.guard
6.400000e+01 5.000000e+00 0.000000e+00
longdouble.ulp.digits longdouble.neg.ulp.digits longdouble.exponent
-6.300000e+01 -6.400000e+01 1.500000e+01
longdouble.min.exp longdouble.max.exp
-1.638200e+04 1.638400e+04 Random number generation process:
[1] "Mersenne-Twister" "Inversion" "Rejection" Information about the environment
Environmental and options variables affect how package checks and software in it might behave. Here is the environmental variables when running this report
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<bytecode: 0x559f147b5910>
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