Validation Report - cli@3.6.4
Context
This report is fully automated and builds on rhub/ref-image image. Documents the installation of this package on an open source R environment, focusing on:
- Installation environment description
- Testing coverage
It is limited to assess whether unit tests and documentation are present and can execute without error. An assessment would be required that the tests and documentation are meaningful.
Package cli
Metric based risk assessment
The following metrics are derived from the riskmetric R package.
| has_news | 1 |
| news_current | TRUE |
| exported_namespace | 240 |
| has_vignettes | 0 |
| export_help | 240 |
| has_website | TRUE |
| has_maintainer | Gábor Csárdi gabor@posit.co |
| bugs_status | subscript out of bounds |
| has_source_control | https://github.com/r-lib/cli |
| has_bug_reports_url | 1 |
| downloads_1yr | 18648634 |
| reverse_dependencies | 990 |
| has_examples | 0.9159664 |
| dependencies | 1 |
| license | MIT + file LICENSE |
Package general assessment: Coverage, check results, size, download the last year, reverse dependencies and number of dependencies.
Dependencies
Overall the package has these dependencies:
| package | type | |
|---|---|---|
| 1 | utils | Imports |
Package dependencies
Reverse dependencies
Overall the package has 990 reverse dependencies:
AcceptReject, actxps, admiral, admiraldev, admiralmetabolic, admiralonco, admiralophtha, admiralpeds, afcharts, AFR, ageutils, agua, airnow, alarmdata, alcyon, alien, allcontributors, allofus, almanac, alookr, AlpsNMR, altdoc, AMR, anabel, Andromeda, antaresEditObject, ao, apache.sedona, apollo, appsheet, arcgisgeocode, arcgislayers, arcgisplaces, arcgisutils, archive, arrow, artpack, asciicast, askgpt, assertions, atena, ATQ, atrrr, attachment, augmentedRCBD, autoimport, autoslider.core, autovi, available, babelmixr2, baf, bage, baguette, bambooHR, bandicoot, bartMan, baRulho, baseballr, basedosdados, basket, BatchGetSymbols, BATSS, BayesERtools, BayesianReasoning, BayLum, bbw, bcdata, BCEA, beastt, beer, bigrquery, BiocBook, BiocCheck, biocompute, biocroxytest, biodosetools, birdie, bittermelon, bonsai, box.linters, box.lsp, brada, brickster, broom.helpers, brulee, bsicons, bskyr, bullseye, bupaR, bupaverse, butcher, cabinets, cache, calendar, callr, camtrapdp, cancerscreening, cards, cardx, cartographer, cartographr, cascadess, catfun, cbioportalR, ccdR, CDMConnector, cellKey, cellxgenedp, censo2017, censored, cffr, chattr, cheatsheet, checked, checker, checkglobals, checkhelper, checkthat, chess, circle, cito, cliapp, climaemet, clinicalsignificance, clock, cloudfs, cloudstoR, clustlearn, ClustMC, cmdfun, cmmr, cocoon, codebreaker, CodelistGenerator, codemetar, CohortCharacteristics, CohortConstructor, CohortSurvival, CohortSymmetry, coinmarketcapr, compdb, comtradr, concordexR, condathis, conflicted, conformalbayes, congress, connectcreds, constructive, contrastable, cookiemonster, cookies, correlationfunnel, coursekata, covid19india, covidmx, covtracer, cpp11, creditmodel, creepyalien, crew, crew.aws.batch, cricketdata, crisprVerse, CrossClustering, crosshap, crossmap, crosstable, crumble, crypto2, cryptoQuotes, cSEM, csranks, csvwr, cTOST, ctxR, cubble, CuratedAtlasQueryR, cvap, cvasi, cvdprevent, CVXR, czso, dabestr, daiR, DanielBiostatistics10th, dar, dartRverse, dataclass, DataPackageR, dataquieR, dataset, dawaR, dbplyr, debkeepr, deeptime, densityarea, desc, DescrTab2, descstat, DescTools, desk, devtools, DiagrammeR, dials, diffmatchpatch, DImodelsMulti, DImodelsVis, dipsaus, distops, divent, diveR, dm, dockerfiler, doctest, dotprofile, dpkg, dplyr, drake, DrugUtilisation, DSI, dsTidyverse, dsTidyverseClient, dtplyr, duckplyr, dverse, dynamite, DynForest, easycensus, easydb, easysurv, EDCimport, edeaR, edibble, edwards97, EFAtools, ellmer, embed, emuR, enderecobr, envstat, envvar, eodhdR2, eph, epicmodel, epidatr, EpiForsk, EpiNow2, epiparameter, epizootic, eplusr, epwshiftr, euroleaguer, evalITR, excluder, ExclusionTable, executablePackeR, experiences, explore, expstudy, extractox, exuber, exvatools, eye, f1dataR, FaaSr, faers, FastRet, fastRhockey, FastUtils, fauxnaif, favawesome, fdacluster, fdasrvf, FeatureExtraction, feltr, ferrn, ffscrapr, FFTrees, fgeo, fHMM, fiery, findSVI, finetune, finnts, fio, firebase, fitlandr, fitzRoy, flashr, fledge, flipr, FMAT, fmeffects, fmpapi, foghorn, forcats, FoReco, formods, fpp2, fpp3, fr, frenchdata, frictionless, froggeR, funkyheatmap, funModeling, fusen, future.tests, GA, galah, galigor, gargle, gDNAx, GDPuc, gemini.R, genieBPC, geocodebr, geomander, geosapi, geslaR, getProxy, GetTDData, gg1d, ggalign, gganimate, ggarrow, ggautomap, ggbeeswarm, ggborderline, ggdist, ggetho, ggfittext, ggforce, ggfoundry, ggfun, ggh4x, ggip, ggiraph, gglogger, ggmap, ggmapinset, ggmice, ggmulti, ggpath, ggpattern, ggplot2, ggpolar, ggrain, ggraph, ggreveal, ggsc, ggseqplot, ggshadow, ggside, ggstackplot, ggstance, ggstar, ggstats, ggsurveillance, ggsurvfit, ggtangle, ggtree, ggtreeExtra, ggtricks, gh, ghclass, gitignore, GitStats, gittargets, glossr, gmailr, golem, googleAnalyticsR, googleAuthR, googleCloudStorageR, googledrive, googlePubsubR, googlesheets4, govinfoR, gptstudio, gptzeror, gratia, greatR, greed, greta, greta.dynamics, greta.gam, greta.gp, grwat, GSVA, gt, gtable, gtexr, gtExtras, gtfsrouter, gtfstools, gtreg, gtsummary, guideR, gutenbergr, halfmoon, hardhat, haven, hdImpute, healthyverse, heemod, heumilkr, hfhub, highlighter, hoopR, httr2, hubEnsembles, hubUtils, hypr, ibawds, icecream, ife, igraph, ijtiff, incase, IncidencePrevalence, indiedown, infer, inferCSN, Infusion, innsight, interactions, invivoPKfit, ipaddress, iraceplot, itscalledsoccer, iucnr, japanstat, JBrowseR, jinjar, jlmerclusterperm, jmastats, jobqueue, JointFPM, jot, joyn, jpcity, jpgrid, jsonstat, jstor, jtools, karyotapR, keras3, keyATM, khisr, kisopenapi, labelled, labNorm, laminr, landscapemetrics, lava, lcsm, LearnSL, LearnVizLMM, legendry, leprechaun, lgr, lifecycle, linne, lintr, lmtp, log, loon.ggplot, lsasim, lubrilog, luz, MachineShop, maestro, makepipe, mall, MAMS, manydata, manynet, mappoly, mapscanner, MarginalMediation, mark, marquee, maskr, matchedcc, matchmaker, matrixset, mclustAddons, mctq, md4r, measr, measurementProtocol, medfateland, meltr, mergenstudio, metabolic, metasnf, meteoland, meteospain, MicrobiotaProcess, microinverterdata, midi, migrate, miniLNM, mirai, mlbplotR, mlmpower, mlr3summary, mlr3superlearner, mmrm, modeldb, modelenv, modeltime, modeltime.ensemble, modeltime.resample, modisfast, moexer, MoleculeExperiment, MolgenisArmadillo, monolix2rx, MOODE, moodleR, move2, mpactr, mpathr, mpathsenser, msSPChelpR, mtscr, multidplyr, multimedia, mutationtypes, naijR, name, namer, naniar, NanoMethViz, nasapower, navigatr, nblR, ncaavolleyballr, ncodeR, nestedmodels, nevada, nflfastR, nflplotR, nflreadr, nflseedR, nflverse, ngramr, nichetools, nlmixr2, nlmixr2est, nlmixr2extra, nlmixr2lib, nlmixr2rpt, nls.multstart, nonmem2rx, nuggets, nuts, octopusR, odbc, odbr, oddsapiR, oeli, officer, ohun, oldr, OlinkAnalyze, omock, omopgenerics, OmopSketch, OmopViewer, oolong, openair, openairmaps, opendataformat, openFDA, openscoring, openVA, oppr, optedr, optimizeR, orbital, origin, otargen, oysteR, packagepal, packer, pacta.multi.loanbook, pak, palette, palettes, PaRe, pargasite, parquetize, parsermd, parsnip, patchwork, PatientProfiles, PhenotypeR, PhIPData, photon, phsmethods, phylepic, phylosamp, piecemaker, PieGlyph, piggyback, pillar, pins, pioneeR, pixelpuzzle, pkgbuild, pkgcache, pkgdepends, pkgdown, pkgload, PL94171, planscorer, PlotFTIR, plotor, plutor, plyxp, pointblank, poldis, polmineR, poputils, portalr, powerjoin, powRICLPM, ppgmmga, precommit, precondition, preregr, prioritizr, prismatic, probably, processmapR, processpredictR, processx, prodigenr, proffer, progressr, prompt, ProTrackR2, proverbs, prqlr, prt, psmineR, psychmeta, psychReport, PsychWordVec, PurpleAir, purrr, pushoverr, pvda, pysparklyr, quadVAR, qualtRics, quarto, r5r, racademyocean, ractivecampaign, raer, rairtable, ramlegacy, raqs, rayrender, rayvertex, rbiom, rcites, rcmdcheck, RcppJagger, rDataPipeline, rdeps, rdhs, rdlearn, Rduinoiot, react, readapra, readMDTable, readr, rebib, recforest, recipes, REDCapDM, REDCapTidieR, redist, redistmetrics, redistverse, regressinator, renv, reprex, reproducible, resmush, resquin, restez, rethnicity, reticulate, rextendr, RFishBC, rfm, rfold, RGAN, rgee, rgeomstats, rgoogleads, rhino, rhub, ricu, riem, ringostat, rJavaEnv, rjsoncons, rjtools, rlang, rliger, rlinkedinads, rmdl, rmweather, robotoolbox, Rogue, rollama, romic, ropenblas, roundwork, roxygen2, roxygen2md, roxylint, roxytypes, rpostgis, RprobitB, rredlist, rsample, rsconnect, RSQLite, rstudio.prefs, rsurveycto, rtgstat, rticulate, ruminate, rvec, rvest, rwarrior, rWCVP, rxode2, rytstat, s3, sae.projection, saeHB.unit, saens, safetensors, saros, saros.base, sars, sbo, sbtools, scales, scatterpie, scCustomize, scDotPlot, scenes, scFeatures, scorecard, scoringutils, SCORPION, SCpubr, scregclust, scrutiny, sdcHierarchies, sdcLog, sdmTMB, SDMtune, sdtm.oak, seahtrue, segclust2d, selenider, sendgridr, seqArchR, seqArchRplus, sequoia, serocalculator, sessioninfo, settingsSync, sevenbridges2, sever, sewage, sfd, sfdep, shapr, shide, shiny2docker, shinyExprPortal, shinylive, shinyloadtest, shinyMixR, shinyMobile, shinyquiz, SIAmodules, SIAtools, siconvr, sigminer, SimDesign, sinew, SIPDIBGE, sits, sjSDM, sketchy, skimr, skpr, slap, slider, snvecR, SomaDataIO, SpaDES.core, sparsegl, sparsevctrs, spdesign, speakr, spicyR, spotoroo, sqltargets, squat, srcpkgs, sreg, srppp, sspm, staccuracy, stacks, stagedtrees, starter, STATcubeR, statnipokladna, stbl, stenR, SticsRFiles, stochLAB, stoRy, streamy, streetscape, string2path, stringr, styler, sudachir, suddengains, summclust, supernova, surveydown, susographql, svMisc, sweater, tablexlsx, tabulate, tabxplor, tada, targets, taxa, taxize, taylor, teal.code, TestGenerator, testthat, texor, text2speech, textrecipes, tfevents, tglkmeans, thaipdf, themis, TheOpenAIR, theorytools, thinkr, tibble, tibblify, tidybayes, tidychangepoint, tidyclust, tidycmprsk, tidyCoverage, tidydelta, tidyEdSurvey, tidyfinance, tidygam, tidygraph, tidyhydat, tidyindex, tidyllm, tidymodels, tidyomics, tidyplots, tidypredict, tidyprompt, tidyquant, tidyr, tidyREDCap, tidyrules, tidyselect, tidyseurat, tidySingleCellExperiment, tidySpatialExperiment, tidysq, tidySummarizedExperiment, tidyterra, tidytext, tidytlg, tidytree, tidytuesdayR, tidyverse, tidywikidatar, timbr, timeplyr, tinytiger, tipr, TITAN2, tmap, tna, tntpr, toposort, torch, trackdown, transx, traudem, TreeDist, treeio, treemapify, TreeMineR, TreeSearch, treesitter, tremendousr, trimmer, trud, tune, TwoWayFEWeights, ubiquity, UnalR, unicol, unikn, updateme, updater, urlchecker, urlshorteneR, usedthese, usemodels, usethis, utf8, uxr, valentine, valr, vcr, vctrs, versus, vetiver, VicmapR, visdat, visOmopResults, vroom, vvauditor, wacolors, waldo, warbleR, washi, wbids, wdpar, webmockr, wehoop, weird, whereami, whippr, whitewater, wikkitidy, worcs, workflows, workflowsets, worldfootballR, wpm, writer, wru, xmap, xml2, xportr, xpose.xtras, yardstick, yfR, yulab.utils, zellkonverter, zen4R, zendown, zenstats, zephyr
Namespace
Overall the package has 240 exported objects. 240 are documented:
__cli_update_due ansi_align
TRUE TRUE
ansi_chartr ansi_collapse
TRUE TRUE
ansi_columns ansi_grep
TRUE TRUE
ansi_grepl ansi_has_any
TRUE TRUE
ansi_has_hyperlink_support ansi_hide_cursor
TRUE TRUE
ansi_html ansi_html_style
TRUE TRUE
ansi_hyperlink_types ansi_nchar
TRUE TRUE
ansi_nzchar ansi_palette_show
TRUE TRUE
ansi_palettes ansi_regex
TRUE TRUE
ansi_show_cursor ansi_simplify
TRUE TRUE
ansi_string ansi_strip
TRUE TRUE
ansi_strsplit ansi_strtrim
TRUE TRUE
ansi_strwrap ansi_substr
TRUE TRUE
ansi_substring ansi_tolower
TRUE TRUE
ansi_toupper ansi_trimws
TRUE TRUE
ansi_with_hidden_cursor bg_black
TRUE TRUE
bg_blue bg_br_black
TRUE TRUE
bg_br_blue bg_br_cyan
TRUE TRUE
bg_br_green bg_br_magenta
TRUE TRUE
bg_br_red bg_br_white
TRUE TRUE
bg_br_yellow bg_cyan
TRUE TRUE
bg_green bg_magenta
TRUE TRUE
bg_none bg_red
TRUE TRUE
bg_white bg_yellow
TRUE TRUE
boxx builtin_theme
TRUE TRUE
cat_boxx cat_bullet
TRUE TRUE
cat_line cat_print
TRUE TRUE
cat_rule ccli_tick_reset
TRUE TRUE
cli cli_abort
TRUE TRUE
cli_alert cli_alert_danger
TRUE TRUE
cli_alert_info cli_alert_success
TRUE TRUE
cli_alert_warning cli_blockquote
TRUE TRUE
cli_bullets cli_bullets_raw
TRUE TRUE
cli_code cli_div
TRUE TRUE
cli_dl cli_end
TRUE TRUE
cli_fmt cli_format
TRUE TRUE
cli_format_method cli_h1
TRUE TRUE
cli_h2 cli_h3
TRUE TRUE
cli_inform cli_li
TRUE TRUE
cli_list_themes cli_ol
TRUE TRUE
cli_output_connection cli_par
TRUE TRUE
cli_process_done cli_process_failed
TRUE TRUE
cli_process_start cli_progress_along
TRUE TRUE
cli_progress_bar cli_progress_builtin_handlers
TRUE TRUE
cli_progress_cleanup cli_progress_demo
TRUE TRUE
cli_progress_done cli_progress_message
TRUE TRUE
cli_progress_num cli_progress_output
TRUE TRUE
cli_progress_step cli_progress_styles
TRUE TRUE
cli_progress_update cli_rule
TRUE TRUE
cli_sitrep cli_status
TRUE TRUE
cli_status_clear cli_status_update
TRUE TRUE
cli_text cli_tick_reset
TRUE TRUE
cli_ul cli_vec
TRUE TRUE
cli_verbatim cli_warn
TRUE TRUE
code_highlight code_theme_list
TRUE TRUE
col_black col_blue
TRUE TRUE
col_br_black col_br_blue
TRUE TRUE
col_br_cyan col_br_green
TRUE TRUE
col_br_magenta col_br_red
TRUE TRUE
col_br_white col_br_yellow
TRUE TRUE
col_cyan col_green
TRUE TRUE
col_grey col_magenta
TRUE TRUE
col_none col_red
TRUE TRUE
col_silver col_white
TRUE TRUE
col_yellow combine_ansi_styles
TRUE TRUE
console_width default_app
TRUE TRUE
demo_spinners diff_chr
TRUE TRUE
diff_str format_bullets_raw
TRUE TRUE
format_error format_inline
TRUE TRUE
format_message format_warning
TRUE TRUE
get_spinner has_keypress_support
TRUE TRUE
hash_animal hash_emoji
TRUE TRUE
hash_file_md5 hash_file_sha1
TRUE TRUE
hash_file_sha256 hash_file_xxhash
TRUE TRUE
hash_file_xxhash64 hash_md5
TRUE TRUE
hash_obj_animal hash_obj_emoji
TRUE TRUE
hash_obj_md5 hash_obj_sha1
TRUE TRUE
hash_obj_sha256 hash_obj_xxhash
TRUE TRUE
hash_obj_xxhash64 hash_raw_animal
TRUE TRUE
hash_raw_emoji hash_raw_md5
TRUE TRUE
hash_raw_sha1 hash_raw_sha256
TRUE TRUE
hash_raw_xxhash hash_raw_xxhash64
TRUE TRUE
hash_sha1 hash_sha256
TRUE TRUE
hash_xxhash hash_xxhash64
TRUE TRUE
is_ansi_tty is_dynamic_tty
TRUE TRUE
is_utf8_output keypress
TRUE TRUE
list_border_styles list_spinners
TRUE TRUE
list_symbols make_ansi_style
TRUE TRUE
make_spinner no
TRUE TRUE
num_ansi_colors pb_bar
TRUE TRUE
pb_current pb_current_bytes
TRUE TRUE
pb_elapsed pb_elapsed_clock
TRUE TRUE
pb_elapsed_raw pb_eta
TRUE TRUE
pb_eta_raw pb_eta_str
TRUE TRUE
pb_extra pb_id
TRUE TRUE
pb_name pb_percent
TRUE TRUE
pb_pid pb_rate
TRUE TRUE
pb_rate_bytes pb_rate_raw
TRUE TRUE
pb_spin pb_status
TRUE TRUE
pb_timestamp pb_total
TRUE TRUE
pb_total_bytes pluralize
TRUE TRUE
pretty_print_code qty
TRUE TRUE
rule ruler
TRUE TRUE
simple_theme spark_bar
TRUE TRUE
spark_line start_app
TRUE TRUE
stop_app style_blurred
TRUE TRUE
style_bold style_dim
TRUE TRUE
style_hidden style_hyperlink
TRUE TRUE
style_inverse style_italic
TRUE TRUE
style_no_bg_color style_no_blurred
TRUE TRUE
style_no_bold style_no_color
TRUE TRUE
style_no_dim style_no_hidden
TRUE TRUE
style_no_inverse style_no_italic
TRUE TRUE
style_no_strikethrough style_no_underline
TRUE TRUE
style_reset style_strikethrough
TRUE TRUE
style_underline symbol
TRUE TRUE
test_that_cli ticking
TRUE TRUE
tree truecolor
TRUE TRUE
utf8_graphemes utf8_nchar
TRUE TRUE
utf8_substr vt_output
TRUE TRUE Examples
There are 109 help pages with examples, from 119 (91.60 %).
NEWS
The package has NEWS file and it is current.
License
The package uses .
Installation environment
System Info
| Field | Value |
|---|---|
| Image | rhub/ref-image |
| OS | Ubuntu 24.04.1 LTS |
| Platform | x86_64-pc-linux-gnu |
| System | x86_64, linux-gnu |
| Execution Time | 2025-02-16 04:29:22 UTC |
System information. Table about the system used to check the package.
R Session Info
Information about the R environment and capabilities:
R version 4.4.2 (2024-10-31)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 24.04.1 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so; LAPACK version 3.12.0
locale:
[1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8
[4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8
[7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C
time zone: UTC
tzcode source: system (glibc)
attached base packages:
[1] tools stats graphics grDevices utils datasets methods
[8] base
loaded via a namespace (and not attached):
[1] riskreports_0.0.0.9003 compiler_4.4.2 fastmap_1.2.0
[4] cli_3.6.4 htmltools_0.5.8.1 yaml_2.3.10
[7] rmarkdown_2.29 knitr_1.49 jsonlite_1.8.9
[10] xfun_0.50 digest_0.6.37 rlang_1.1.5
[13] evaluate_1.0.3 Platform used:
OS.type file.sep dynlib.ext GUI endian pkgType path.sep
"unix" "/" ".so" "X11" "little" "source" ":"
r_arch
"" R’s capabilities:
jpeg png tiff tcltk X11 aqua
TRUE TRUE TRUE TRUE FALSE FALSE
http/ftp sockets libxml fifo cledit iconv
TRUE TRUE FALSE TRUE FALSE TRUE
NLS Rprof profmem cairo ICU long.double
TRUE TRUE TRUE TRUE TRUE TRUE
libcurl
TRUE External software:
zlib
"1.3"
bzlib
"1.0.8, 13-Jul-2019"
xz
"5.4.5"
libdeflate
"1.19"
PCRE
"10.42 2022-12-11"
ICU
"74.2"
TRE
"TRE 0.8.0 R_fixes (BSD)"
iconv
"glibc 2.39"
readline
"8.2"
BLAS
"/usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3" Graphics external software:
cairo cairoFT pango
"1.18.0" "" "1.52.1"
libpng jpeg libtiff
"1.6.43" "8.0" "LIBTIFF, Version 4.5.1" Numerical characteristics of the machine:
double.eps double.neg.eps double.xmin
2.220446e-16 1.110223e-16 2.225074e-308
double.xmax double.base double.digits
1.797693e+308 2.000000e+00 5.300000e+01
double.rounding double.guard double.ulp.digits
5.000000e+00 0.000000e+00 -5.200000e+01
double.neg.ulp.digits double.exponent double.min.exp
-5.300000e+01 1.100000e+01 -1.022000e+03
double.max.exp integer.max sizeof.long
1.024000e+03 2.147484e+09 8.000000e+00
sizeof.longlong sizeof.longdouble sizeof.pointer
8.000000e+00 1.600000e+01 8.000000e+00
sizeof.time_t longdouble.eps longdouble.neg.eps
8.000000e+00 1.084202e-19 5.421011e-20
longdouble.digits longdouble.rounding longdouble.guard
6.400000e+01 5.000000e+00 0.000000e+00
longdouble.ulp.digits longdouble.neg.ulp.digits longdouble.exponent
-6.300000e+01 -6.400000e+01 1.500000e+01
longdouble.min.exp longdouble.max.exp
-1.638200e+04 1.638400e+04 Random number generation process:
[1] "Mersenne-Twister" "Inversion" "Rejection" Information about the environment
Environmental and options variables affect how package checks and software in it might behave. Here is the environmental variables when running this report
_R_CHECK_SYSTEM_CLOCK_
FALSE
ACCEPT_EULA Y
ACTIONS_RUNNER_ACTION_ARCHIVE_CACHE
/opt/actionarchivecache
AGENT_TOOLSDIRECTORY /opt/hostedtoolcache
ANDROID_HOME /usr/local/lib/android/sdk
ANDROID_NDK /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_HOME /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_LATEST_HOME
/usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_ROOT /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_SDK_ROOT /usr/local/lib/android/sdk
ANT_HOME /usr/share/ant
AZURE_EXTENSION_DIR /opt/az/azcliextensions
BOOTSTRAP_HASKELL_NONINTERACTIVE
1
BUNDLE_EXT linux-amd64.deb
CHROME_BIN /usr/bin/google-chrome
CHROMEWEBDRIVER /usr/local/share/chromedriver-linux64
CI true
CONDA /usr/share/miniconda
DEBIAN_FRONTEND noninteractive
DENO_DOM_PLUGIN /opt/quarto/bin/tools/x86_64/deno_dom/libplugin.so
DENO_NO_UPDATE_CHECK 1
DENO_TLS_CA_STORE system,mozilla
DEPLOYMENT_BASEPATH /opt/runner
DOTNET_MULTILEVEL_LOOKUP
0
DOTNET_NOLOGO 1
DOTNET_SKIP_FIRST_TIME_EXPERIENCE
1
EDGEWEBDRIVER /usr/local/share/edge_driver
EDITOR vi
GECKOWEBDRIVER /usr/local/share/gecko_driver
GHCUP_INSTALL_BASE_PREFIX
/usr/local
GITHUB_ACTION __run
GITHUB_ACTION_REF
GITHUB_ACTION_REPOSITORY
GITHUB_ACTIONS true
GITHUB_ACTOR llrs-roche
GITHUB_ACTOR_ID 185338939
GITHUB_API_URL https://api.github.com
GITHUB_BASE_REF
GITHUB_ENV /home/runner/work/_temp/_runner_file_commands/set_env_6ba12b84-2f44-4ad5-be34-dae80230865f
GITHUB_EVENT_NAME schedule
GITHUB_EVENT_PATH /home/runner/work/_temp/_github_workflow/event.json
GITHUB_GRAPHQL_URL https://api.github.com/graphql
GITHUB_HEAD_REF
GITHUB_JOB main
GITHUB_OUTPUT /home/runner/work/_temp/_runner_file_commands/set_output_6ba12b84-2f44-4ad5-be34-dae80230865f
GITHUB_PATH /home/runner/work/_temp/_runner_file_commands/add_path_6ba12b84-2f44-4ad5-be34-dae80230865f
GITHUB_REF refs/heads/main
GITHUB_REF_NAME main
GITHUB_REF_PROTECTED false
GITHUB_REF_TYPE branch
GITHUB_REPOSITORY pharmaR/pharmapkgs
GITHUB_REPOSITORY_ID 798326913
GITHUB_REPOSITORY_OWNER
pharmaR
GITHUB_REPOSITORY_OWNER_ID
42115094
GITHUB_RETENTION_DAYS 90
GITHUB_RUN_ATTEMPT 1
GITHUB_RUN_ID 13351230359
GITHUB_RUN_NUMBER 93
GITHUB_SERVER_URL https://github.com
GITHUB_SHA b7796ef4941f135c4d61c83d399bb9fa3a477379
GITHUB_STATE /home/runner/work/_temp/_runner_file_commands/save_state_6ba12b84-2f44-4ad5-be34-dae80230865f
GITHUB_STEP_SUMMARY /home/runner/work/_temp/_runner_file_commands/step_summary_6ba12b84-2f44-4ad5-be34-dae80230865f
GITHUB_TRIGGERING_ACTOR
llrs-roche
GITHUB_WORKFLOW Update package repositories
GITHUB_WORKFLOW_REF pharmaR/pharmapkgs/.github/workflows/update-repos.yml@refs/heads/main
GITHUB_WORKFLOW_SHA b7796ef4941f135c4d61c83d399bb9fa3a477379
GITHUB_WORKSPACE /home/runner/work/pharmapkgs/pharmapkgs
GOROOT_1_21_X64 /opt/hostedtoolcache/go/1.21.13/x64
GOROOT_1_22_X64 /opt/hostedtoolcache/go/1.22.12/x64
GOROOT_1_23_X64 /opt/hostedtoolcache/go/1.23.6/x64
GRADLE_HOME /usr/share/gradle-8.12.1
HOME /home/runner
HOMEBREW_CLEANUP_PERIODIC_FULL_DAYS
3650
HOMEBREW_NO_AUTO_UPDATE
1
ImageOS ubuntu24
ImageVersion 20250209.1.0
INVOCATION_ID cea0ff53850b49ce839e8b7d02d05041
JAVA_HOME /usr/lib/jvm/temurin-17-jdk-amd64
JAVA_HOME_11_X64 /usr/lib/jvm/temurin-11-jdk-amd64
JAVA_HOME_17_X64 /usr/lib/jvm/temurin-17-jdk-amd64
JAVA_HOME_21_X64 /usr/lib/jvm/temurin-21-jdk-amd64
JAVA_HOME_8_X64 /usr/lib/jvm/temurin-8-jdk-amd64
JOURNAL_STREAM 8:7454
LANG C.UTF-8
LD_LIBRARY_PATH /opt/R/4.4.2/lib/R/lib:/usr/local/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/temurin-17-jdk-amd64/lib/server:/opt/R/4.4.2/lib/R/lib:/usr/local/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/temurin-17-jdk-amd64/lib/server
LN_S ln -s
LOGGER_LOG_LEVEL DEBUG
MAKE make
MEMORY_PRESSURE_WATCH /sys/fs/cgroup/system.slice/runner-provisioner.service/memory.pressure
MEMORY_PRESSURE_WRITE c29tZSAyMDAwMDAgMjAwMDAwMAA=
NOT_CRAN true
NVM_DIR /home/runner/.nvm
PAGER /usr/bin/pager
PATH /snap/bin:/home/runner/.local/bin:/opt/pipx_bin:/home/runner/.cargo/bin:/home/runner/.config/composer/vendor/bin:/usr/local/.ghcup/bin:/home/runner/.dotnet/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
PERFLOG_LOCATION_SETTING
RUNNER_PERFLOG
PHARMAPKGS_EXCLUDED_METRICS
assess_covr_coverage,assess_r_cmd_check
PHARMAPKGS_LIMIT 1000
PHARMAPKGS_PLATFORM ubuntu-22.04
PHARMAPKGS_R_VERSION 4.4
PHARMAPKGS_REMOTE_REPO
https://cloud.r-project.org/
PIPX_BIN_DIR /opt/pipx_bin
PIPX_HOME /opt/pipx
PKGCACHE_HTTP_VERSION 2
PKGLOAD_PARENT_TEMPDIR
/tmp/RtmpCk6Ofc
POWERSHELL_DISTRIBUTION_CHANNEL
GitHub-Actions-ubuntu24
PROCESSX_PS1bc3f26eca6_1739680157
YES
PWD /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_BIN_PATH /opt/quarto/bin
QUARTO_DENO /opt/quarto/bin/tools/x86_64/deno
QUARTO_DOCUMENT_PATH /home/runner/work/pharmapkgs/pharmapkgs/inst/report
QUARTO_PROFILE
QUARTO_PROJECT_DIR /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_PROJECT_ROOT /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_ROOT /
QUARTO_SHARE_PATH /opt/quarto/share
R_ARCH
R_BROWSER xdg-open
R_BZIPCMD /usr/bin/bzip2
R_DOC_DIR /opt/R/4.4.2/lib/R/doc
R_GZIPCMD /usr/bin/gzip
R_HOME /opt/R/4.4.2/lib/R
R_INCLUDE_DIR /opt/R/4.4.2/lib/R/include
R_LIB_FOR_PAK /opt/R/4.4.2/lib/R/site-library
R_LIBS_SITE /opt/R/4.4.2/lib/R/site-library
R_LIBS_USER /home/runner/work/_temp/Library
R_PAPERSIZE letter
R_PAPERSIZE_USER letter
R_PDFVIEWER /usr/bin/xdg-open
R_PLATFORM x86_64-pc-linux-gnu
R_PRINTCMD /usr/bin/lpr
R_RD4PDF times,inconsolata,hyper
R_SESSION_TMPDIR /tmp/RtmpEEMgZu
R_SHARE_DIR /opt/R/4.4.2/lib/R/share
R_STRIP_SHARED_LIB strip --strip-unneeded
R_STRIP_STATIC_LIB strip --strip-debug
R_TEXI2DVICMD /usr/bin/texi2dvi
R_UNZIPCMD /usr/bin/unzip
R_ZIPCMD /usr/bin/zip
RUNNER_ARCH X64
RUNNER_ENVIRONMENT github-hosted
RUNNER_NAME GitHub Actions 9
RUNNER_OS Linux
RUNNER_PERFLOG /home/runner/perflog
RUNNER_TEMP /home/runner/work/_temp
RUNNER_TOOL_CACHE /opt/hostedtoolcache
RUNNER_TRACKING_ID github_d0120492-4873-4b13-9ede-fb6d0d82420b
RUNNER_USER runner
RUNNER_WORKSPACE /home/runner/work/pharmapkgs
SED /usr/bin/sed
SELENIUM_JAR_PATH /usr/share/java/selenium-server.jar
SGX_AESM_ADDR 1
SHLVL 1
STATS_D true
STATS_D_D true
STATS_D_TC true
STATS_EXT true
STATS_EXTP https://provjobdprod.z13.web.core.windows.net/settings/provjobdsettings-latest/provjobd.data
STATS_PIP false
STATS_RDCL true
STATS_TRP true
STATS_UE true
STATS_V3PS true
STATS_VMD true
STATS_VMFE true
SWIFT_PATH /usr/share/swift/usr/bin
SYSTEMD_EXEC_PID 829
TAR /usr/bin/tar
TZ UTC
USER runner
VCPKG_INSTALLATION_ROOT
/usr/local/share/vcpkg
XDG_CONFIG_HOME /home/runner/.config
XDG_RUNTIME_DIR /run/user/1001These are the options set to generate the report:
$add.smooth
[1] TRUE
$bitmapType
[1] "cairo"
$browser
[1] "xdg-open"
$browserNLdisabled
[1] FALSE
$callr.condition_handler_cli_message
function (msg)
{
custom_handler <- getOption("cli.default_handler")
if (is.function(custom_handler)) {
custom_handler(msg)
}
else {
cli_server_default(msg)
}
}
<bytecode: 0x55c3dfd34910>
<environment: namespace:cli>
$catch.script.errors
[1] FALSE
$CBoundsCheck
[1] FALSE
$check.bounds
[1] FALSE
$citation.bibtex.max
[1] 1
$continue
[1] "+ "
$contrasts
unordered ordered
"contr.treatment" "contr.poly"
$covr.record_tests
[1] TRUE
$defaultPackages
[1] "datasets" "utils" "grDevices" "graphics" "stats" "methods"
$demo.ask
[1] "default"
$deparse.cutoff
[1] 60
$device
function (width = 7, height = 7, ...)
{
grDevices::pdf(NULL, width, height, ...)
}
<bytecode: 0x55c3df489ec0>
<environment: namespace:knitr>
$device.ask.default
[1] FALSE
$digits
[1] 7
$dvipscmd
[1] "dvips"
$echo
[1] FALSE
$editor
[1] "vi"
$encoding
[1] "native.enc"
$example.ask
[1] "default"
$expressions
[1] 5000
$help.search.types
[1] "vignette" "demo" "help"
$help.try.all.packages
[1] FALSE
$htmltools.preserve.raw
[1] TRUE
$HTTPUserAgent
[1] "R/4.4.2 R (4.4.2 x86_64-pc-linux-gnu x86_64 linux-gnu) on GitHub Actions"
$internet.info
[1] 2
$keep.parse.data
[1] TRUE
$keep.parse.data.pkgs
[1] FALSE
$keep.source
[1] FALSE
$keep.source.pkgs
[1] FALSE
$knitr.in.progress
[1] TRUE
$locatorBell
[1] TRUE
$mailer
[1] "mailto"
$matprod
[1] "default"
$max.contour.segments
[1] 25000
$max.print
[1] 99999
$menu.graphics
[1] TRUE
$na.action
[1] "na.omit"
$Ncpus
[1] 1
$nwarnings
[1] 50
$OutDec
[1] "."
$pager
[1] "/opt/R/4.4.2/lib/R/bin/pager"
$papersize
[1] "letter"
$PCRE_limit_recursion
[1] NA
$PCRE_study
[1] FALSE
$PCRE_use_JIT
[1] TRUE
$pdfviewer
[1] "/usr/bin/xdg-open"
$pkgType
[1] "source"
$printcmd
[1] "/usr/bin/lpr"
$prompt
[1] "> "
$repos
CRAN
"https://cran.rstudio.com"
$rl_word_breaks
[1] " \t\n\"\\'`><=%;,|&{()}"
$rlang_trace_top_env
<environment: R_GlobalEnv>
$scipen
[1] 0
$show.coef.Pvalues
[1] TRUE
$show.error.messages
[1] TRUE
$show.signif.stars
[1] TRUE
$showErrorCalls
[1] TRUE
$showNCalls
[1] 50
$showWarnCalls
[1] FALSE
$str
$str$strict.width
[1] "no"
$str$digits.d
[1] 3
$str$vec.len
[1] 4
$str$list.len
[1] 99
$str$deparse.lines
NULL
$str$drop.deparse.attr
[1] TRUE
$str$formatNum
function (x, ...)
format(x, trim = TRUE, drop0trailing = TRUE, ...)
<environment: 0x55c3df20c520>
$str.dendrogram.last
[1] "`"
$texi2dvi
[1] "/usr/bin/texi2dvi"
$tikzMetricsDictionary
[1] "validation_report_cli_v3.6.4-tikzDictionary"
$timeout
[1] 60
$try.outFile
A connection with
description ""
class "file"
mode "w+b"
text "binary"
opened "opened"
can read "yes"
can write "yes"
$ts.eps
[1] 1e-05
$ts.S.compat
[1] FALSE
$unzip
[1] "/usr/bin/unzip"
$useFancyQuotes
[1] FALSE
$verbose
[1] FALSE
$warn
[1] 0
$warning.length
[1] 1000
$warnPartialMatchArgs
[1] FALSE
$warnPartialMatchAttr
[1] FALSE
$warnPartialMatchDollar
[1] FALSE
$width
[1] 80