Validation Report - chevron@0.2.7

Context

This report is fully automated and builds on rhub/ref-image image. Documents the installation of this package on an open source R environment, focusing on:

  • Installation environment description
  • Testing coverage

It is limited to assess whether unit tests and documentation are present and can execute without error. An assessment would be required that the tests and documentation are meaningful.

Package chevron

Metric based risk assessment

The following metrics are derived from the riskmetric R package.

has_news 1
news_current TRUE
exported_namespace 219
has_vignettes 6
export_help 228
has_website TRUE
has_maintainer Liming Li
bugs_status subscript out of bounds
has_source_control https://github.com/insightsengineering/chevron/
has_bug_reports_url 1
downloads_1yr 5710
reverse_dependencies 0
has_examples 0.9931507
dependencies 21
license Apache License 2.0

Package general assessment: Coverage, check results, size, download the last year, reverse dependencies and number of dependencies.

Dependencies

Overall the package has these dependencies:

package type
1 checkmate (>= 2.1.0) Imports
2 dplyr (>= 1.1.0) Imports
3 dunlin (>= 0.1.7) Imports
4 forcats (>= 1.0.0) Imports
5 formatters (>= 0.5.9) Imports
6 ggplot2 (>= 3.4.0) Imports
7 glue (>= 1.0.0) Imports
8 grid Imports
9 lifecycle (>= 0.2.0) Imports
10 lubridate (>= 1.7.8) Imports
11 magrittr (>= 1.5) Imports
12 methods Imports
13 nestcolor (>= 0.1.1) Imports
14 purrr (>= 0.3.0) Imports
15 rlang (>= 1.0.0) Imports
16 rlistings (>= 0.2.9) Imports
17 rtables (>= 0.6.10) Imports
18 stringr (>= 1.4.1) Imports
19 tern (>= 0.9.6) Imports
20 tibble (>= 2.0.0) Imports
21 utils Imports

Package dependencies

Reverse dependencies

Overall the package has 0 reverse dependencies:

Namespace

Overall the package has 219 exported objects. 228 are documented:

          ael01_nollt      ael01_nollt_main       ael01_nollt_pre 
                 TRUE                  TRUE                  TRUE 
                ael02            ael02_main             ael02_pre 
                 TRUE                  TRUE                  TRUE 
                ael03            ael03_main             ael03_pre 
                 TRUE                  TRUE                  TRUE 
                aet01            aet01_aesi       aet01_aesi_main 
                 TRUE                  TRUE                  TRUE 
      aet01_aesi_post        aet01_aesi_pre            aet01_main 
                 TRUE                  TRUE                  TRUE 
           aet01_post             aet01_pre                 aet02 
                 TRUE                  TRUE                  TRUE 
          aet02_label            aet02_main            aet02_post 
                 TRUE                  TRUE                  TRUE 
            aet02_pre                 aet03            aet03_main 
                 TRUE                  TRUE                  TRUE 
           aet03_post             aet03_pre                 aet04 
                 TRUE                  TRUE                  TRUE 
           aet04_main            aet04_post             aet04_pre 
                 TRUE                  TRUE                  TRUE 
                aet05             aet05_all         aet05_all_pre 
                 TRUE                  TRUE                  TRUE 
           aet05_main            aet05_post             aet05_pre 
                 TRUE                  TRUE                  TRUE 
                aet10            aet10_main            aet10_post 
                 TRUE                  TRUE                  TRUE 
            aet10_pre               args_ls   assert_single_value 
                 TRUE                  TRUE                  TRUE 
     assert_valid_var assert_valid_variable                cfbt01 
                 TRUE                  TRUE                  TRUE 
          cfbt01_main           cfbt01_post            cfbt01_pre 
                 TRUE                  TRUE                  TRUE 
            chevron_g             chevron_l        chevron_simple 
                 TRUE                  TRUE                  TRUE 
            chevron_t             cml02a_gl        cml02a_gl_main 
                 TRUE                  TRUE                  TRUE 
        cml02a_gl_pre           cmt01_label                cmt01a 
                 TRUE                  TRUE                  TRUE 
          cmt01a_main           cmt01a_post            cmt01a_pre 
                 TRUE                  TRUE                  TRUE 
             cmt02_pt         cmt02_pt_main         cmt02_pt_post 
                 TRUE                  TRUE                  TRUE 
         cmt02_pt_pre      convert_to_month                coxt01 
                 TRUE                  TRUE                  TRUE 
          coxt01_main           coxt01_post            coxt01_pre 
                 TRUE                  TRUE                  TRUE 
               coxt02           coxt02_main    create_id_listings 
                 TRUE                  TRUE                  TRUE 
                dmt01            dmt01_main            dmt01_post 
                 TRUE                  TRUE                  TRUE 
            dmt01_pre      dose_change_rule                 dst01 
                 TRUE                  TRUE                  TRUE 
           dst01_main            dst01_post             dst01_pre 
                 TRUE                  TRUE                  TRUE 
               dtht01           dtht01_main           dtht01_post 
                 TRUE                  TRUE                  TRUE 
           dtht01_pre        dummy_template                 egt01 
                 TRUE                  TRUE                  TRUE 
           egt01_main             egt01_pre               egt02_1 
                 TRUE                  TRUE                  TRUE 
         egt02_1_main               egt02_2          egt02_2_main 
                 TRUE                  TRUE                  TRUE 
           egt02_post             egt02_pre                 egt03 
                 TRUE                  TRUE                  TRUE 
           egt03_main            egt03_post             egt03_pre 
                 TRUE                  TRUE                  TRUE 
          egt05_qtcat      egt05_qtcat_main      egt05_qtcat_post 
                 TRUE                  TRUE                  TRUE 
      egt05_qtcat_pre            empty_rule                 ext01 
                 TRUE                  TRUE                  TRUE 
           ext01_main            ext01_post             ext01_pre 
                 TRUE                  TRUE                  TRUE 
          format_date                fstg01           fstg01_main 
                 TRUE                  TRUE                  TRUE 
           fstg01_pre                fstg02           fstg02_main 
                 TRUE                  TRUE                  TRUE 
           fstg02_pre        get_grade_rule       get_section_div 
                 TRUE                  TRUE                  TRUE 
              gg_list      gg_theme_chevron             grob_list 
                 TRUE                  TRUE                  TRUE 
         h_format_dec                 kmg01            kmg01_main 
                 TRUE                  TRUE                  TRUE 
            kmg01_pre                 lbt01            lbt01_main 
                 TRUE                  TRUE                  TRUE 
            lbt01_pre                 lbt04            lbt04_main 
                 TRUE                  TRUE                  TRUE 
           lbt04_post             lbt04_pre                 lbt05 
                 TRUE                  TRUE                  TRUE 
           lbt05_main            lbt05_post             lbt05_pre 
                 TRUE                  TRUE                  TRUE 
                lbt06            lbt06_main            lbt06_post 
                 TRUE                  TRUE                  TRUE 
            lbt06_pre                 lbt07            lbt07_main 
                 TRUE                  TRUE                  TRUE 
           lbt07_post             lbt07_pre                 lbt14 
                 TRUE                  TRUE                  TRUE 
           lbt14_main            lbt14_post             lbt14_pre 
                 TRUE                  TRUE                  TRUE 
                lbt15             lbt15_pre                  lvls 
                 TRUE                  TRUE                  TRUE 
                 main                main<-                 mht01 
                 TRUE                  TRUE                  TRUE 
          mht01_label            mht01_main            mht01_post 
                 TRUE                  TRUE                  TRUE 
            mht01_pre          missing_rule                 mng01 
                 TRUE                  TRUE                  TRUE 
           mng01_main             mng01_pre              nocoding 
                 TRUE                  TRUE                  TRUE 
          null_report          outcome_rule                 pdt01 
                 TRUE                  TRUE                  TRUE 
           pdt01_main            pdt01_post             pdt01_pre 
                 TRUE                  TRUE                  TRUE 
                pdt02            pdt02_main            pdt02_post 
                 TRUE                  TRUE                  TRUE 
            pdt02_pre           postprocess         postprocess<- 
                 TRUE                  TRUE                  TRUE 
           preprocess          preprocess<-              reformat 
                 TRUE                  TRUE                  TRUE 
          report_null                rmpt01           rmpt01_main 
                 TRUE                  TRUE                  TRUE 
          rmpt01_post            rmpt01_pre                rmpt03 
                 TRUE                  TRUE                  TRUE 
          rmpt03_main            rmpt03_pre                rmpt04 
                 TRUE                  TRUE                  TRUE 
          rmpt04_main            rmpt04_pre                rmpt05 
                 TRUE                  TRUE                  TRUE 
          rmpt05_main            rmpt05_pre                rmpt06 
                 TRUE                  TRUE                  TRUE 
          rmpt06_main           rmpt06_post            rmpt06_pre 
                 TRUE                  TRUE                  TRUE 
               rspt01           rspt01_main           rspt01_post 
                 TRUE                  TRUE                  TRUE 
           rspt01_pre                   run           script_funs 
                 TRUE                  TRUE                  TRUE 
      set_section_div    std_postprocessing                ttet01 
                 TRUE                  TRUE                  TRUE 
          ttet01_main           ttet01_post            ttet01_pre 
                 TRUE                  TRUE                  TRUE 
       var_labels_for                 vst01            vst01_main 
                 TRUE                  TRUE                  TRUE 
            vst01_pre               vst02_1          vst02_1_main 
                 TRUE                  TRUE                  TRUE 
              vst02_2          vst02_2_main            vst02_post 
                 TRUE                  TRUE                  TRUE 
            vst02_pre            with_label           yes_no_rule 
                 TRUE                  TRUE                  TRUE 

Examples

There are 145 help pages with examples, from 146 (99.32 %).

NEWS

The package has NEWS file and it is current.

License

The package uses .

Installation environment

System Info

Field Value
Image rhub/ref-image
OS Ubuntu 24.04.1 LTS
Platform x86_64-pc-linux-gnu
System x86_64, linux-gnu
Execution Time 2025-02-16 04:12:45 UTC

System information. Table about the system used to check the package.

R Session Info

Information about the R environment and capabilities:

R version 4.4.2 (2024-10-31)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 24.04.1 LTS

Matrix products: default
BLAS:   /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so;  LAPACK version 3.12.0

locale:
 [1] LC_CTYPE=C.UTF-8       LC_NUMERIC=C           LC_TIME=C.UTF-8       
 [4] LC_COLLATE=C.UTF-8     LC_MONETARY=C.UTF-8    LC_MESSAGES=C.UTF-8   
 [7] LC_PAPER=C.UTF-8       LC_NAME=C              LC_ADDRESS=C          
[10] LC_TELEPHONE=C         LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C   

time zone: UTC
tzcode source: system (glibc)

attached base packages:
[1] tools     stats     graphics  grDevices utils     datasets  methods  
[8] base     

loaded via a namespace (and not attached):
 [1] riskreports_0.0.0.9003 compiler_4.4.2         fastmap_1.2.0         
 [4] cli_3.6.4              htmltools_0.5.8.1      yaml_2.3.10           
 [7] rmarkdown_2.29         knitr_1.49             jsonlite_1.8.9        
[10] xfun_0.50              digest_0.6.37          rlang_1.1.5           
[13] evaluate_1.0.3        

Platform used:

   OS.type   file.sep dynlib.ext        GUI     endian    pkgType   path.sep 
    "unix"        "/"      ".so"      "X11"   "little"   "source"        ":" 
    r_arch 
        "" 

R’s capabilities:

       jpeg         png        tiff       tcltk         X11        aqua 
       TRUE        TRUE        TRUE        TRUE       FALSE       FALSE 
   http/ftp     sockets      libxml        fifo      cledit       iconv 
       TRUE        TRUE       FALSE        TRUE       FALSE        TRUE 
        NLS       Rprof     profmem       cairo         ICU long.double 
       TRUE        TRUE        TRUE        TRUE        TRUE        TRUE 
    libcurl 
       TRUE 

External software:

                                                     zlib 
                                                    "1.3" 
                                                    bzlib 
                                     "1.0.8, 13-Jul-2019" 
                                                       xz 
                                                  "5.4.5" 
                                               libdeflate 
                                                   "1.19" 
                                                     PCRE 
                                       "10.42 2022-12-11" 
                                                      ICU 
                                                   "74.2" 
                                                      TRE 
                                "TRE 0.8.0 R_fixes (BSD)" 
                                                    iconv 
                                             "glibc 2.39" 
                                                 readline 
                                                    "8.2" 
                                                     BLAS 
"/usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3" 

Graphics external software:

                   cairo                  cairoFT                    pango 
                "1.18.0"                       ""                 "1.52.1" 
                  libpng                     jpeg                  libtiff 
                "1.6.43"                    "8.0" "LIBTIFF, Version 4.5.1" 

Numerical characteristics of the machine:

               double.eps            double.neg.eps               double.xmin 
             2.220446e-16              1.110223e-16             2.225074e-308 
              double.xmax               double.base             double.digits 
            1.797693e+308              2.000000e+00              5.300000e+01 
          double.rounding              double.guard         double.ulp.digits 
             5.000000e+00              0.000000e+00             -5.200000e+01 
    double.neg.ulp.digits           double.exponent            double.min.exp 
            -5.300000e+01              1.100000e+01             -1.022000e+03 
           double.max.exp               integer.max               sizeof.long 
             1.024000e+03              2.147484e+09              8.000000e+00 
          sizeof.longlong         sizeof.longdouble            sizeof.pointer 
             8.000000e+00              1.600000e+01              8.000000e+00 
            sizeof.time_t            longdouble.eps        longdouble.neg.eps 
             8.000000e+00              1.084202e-19              5.421011e-20 
        longdouble.digits       longdouble.rounding          longdouble.guard 
             6.400000e+01              5.000000e+00              0.000000e+00 
    longdouble.ulp.digits longdouble.neg.ulp.digits       longdouble.exponent 
            -6.300000e+01             -6.400000e+01              1.500000e+01 
       longdouble.min.exp        longdouble.max.exp 
            -1.638200e+04              1.638400e+04 

Random number generation process:

[1] "Mersenne-Twister" "Inversion"        "Rejection"       

Information about the environment

Environmental and options variables affect how package checks and software in it might behave. Here is the environmental variables when running this report

_R_CHECK_SYSTEM_CLOCK_
                        FALSE
ACCEPT_EULA             Y
ACTIONS_RUNNER_ACTION_ARCHIVE_CACHE
                        /opt/actionarchivecache
AGENT_TOOLSDIRECTORY    /opt/hostedtoolcache
ANDROID_HOME            /usr/local/lib/android/sdk
ANDROID_NDK             /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_HOME        /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_LATEST_HOME
                        /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_ROOT        /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_SDK_ROOT        /usr/local/lib/android/sdk
ANT_HOME                /usr/share/ant
AZURE_EXTENSION_DIR     /opt/az/azcliextensions
BOOTSTRAP_HASKELL_NONINTERACTIVE
                        1
BUNDLE_EXT              linux-amd64.deb
CHROME_BIN              /usr/bin/google-chrome
CHROMEWEBDRIVER         /usr/local/share/chromedriver-linux64
CI                      true
CONDA                   /usr/share/miniconda
DEBIAN_FRONTEND         noninteractive
DENO_DOM_PLUGIN         /opt/quarto/bin/tools/x86_64/deno_dom/libplugin.so
DENO_NO_UPDATE_CHECK    1
DENO_TLS_CA_STORE       system,mozilla
DEPLOYMENT_BASEPATH     /opt/runner
DOTNET_MULTILEVEL_LOOKUP
                        0
DOTNET_NOLOGO           1
DOTNET_SKIP_FIRST_TIME_EXPERIENCE
                        1
EDGEWEBDRIVER           /usr/local/share/edge_driver
EDITOR                  vi
GECKOWEBDRIVER          /usr/local/share/gecko_driver
GHCUP_INSTALL_BASE_PREFIX
                        /usr/local
GITHUB_ACTION           __run
GITHUB_ACTION_REF       
GITHUB_ACTION_REPOSITORY
                        
GITHUB_ACTIONS          true
GITHUB_ACTOR            llrs-roche
GITHUB_ACTOR_ID         185338939
GITHUB_API_URL          https://api.github.com
GITHUB_BASE_REF         
GITHUB_ENV              /home/runner/work/_temp/_runner_file_commands/set_env_6ba12b84-2f44-4ad5-be34-dae80230865f
GITHUB_EVENT_NAME       schedule
GITHUB_EVENT_PATH       /home/runner/work/_temp/_github_workflow/event.json
GITHUB_GRAPHQL_URL      https://api.github.com/graphql
GITHUB_HEAD_REF         
GITHUB_JOB              main
GITHUB_OUTPUT           /home/runner/work/_temp/_runner_file_commands/set_output_6ba12b84-2f44-4ad5-be34-dae80230865f
GITHUB_PATH             /home/runner/work/_temp/_runner_file_commands/add_path_6ba12b84-2f44-4ad5-be34-dae80230865f
GITHUB_REF              refs/heads/main
GITHUB_REF_NAME         main
GITHUB_REF_PROTECTED    false
GITHUB_REF_TYPE         branch
GITHUB_REPOSITORY       pharmaR/pharmapkgs
GITHUB_REPOSITORY_ID    798326913
GITHUB_REPOSITORY_OWNER
                        pharmaR
GITHUB_REPOSITORY_OWNER_ID
                        42115094
GITHUB_RETENTION_DAYS   90
GITHUB_RUN_ATTEMPT      1
GITHUB_RUN_ID           13351230359
GITHUB_RUN_NUMBER       93
GITHUB_SERVER_URL       https://github.com
GITHUB_SHA              b7796ef4941f135c4d61c83d399bb9fa3a477379
GITHUB_STATE            /home/runner/work/_temp/_runner_file_commands/save_state_6ba12b84-2f44-4ad5-be34-dae80230865f
GITHUB_STEP_SUMMARY     /home/runner/work/_temp/_runner_file_commands/step_summary_6ba12b84-2f44-4ad5-be34-dae80230865f
GITHUB_TRIGGERING_ACTOR
                        llrs-roche
GITHUB_WORKFLOW         Update package repositories
GITHUB_WORKFLOW_REF     pharmaR/pharmapkgs/.github/workflows/update-repos.yml@refs/heads/main
GITHUB_WORKFLOW_SHA     b7796ef4941f135c4d61c83d399bb9fa3a477379
GITHUB_WORKSPACE        /home/runner/work/pharmapkgs/pharmapkgs
GOROOT_1_21_X64         /opt/hostedtoolcache/go/1.21.13/x64
GOROOT_1_22_X64         /opt/hostedtoolcache/go/1.22.12/x64
GOROOT_1_23_X64         /opt/hostedtoolcache/go/1.23.6/x64
GRADLE_HOME             /usr/share/gradle-8.12.1
HOME                    /home/runner
HOMEBREW_CLEANUP_PERIODIC_FULL_DAYS
                        3650
HOMEBREW_NO_AUTO_UPDATE
                        1
ImageOS                 ubuntu24
ImageVersion            20250209.1.0
INVOCATION_ID           cea0ff53850b49ce839e8b7d02d05041
JAVA_HOME               /usr/lib/jvm/temurin-17-jdk-amd64
JAVA_HOME_11_X64        /usr/lib/jvm/temurin-11-jdk-amd64
JAVA_HOME_17_X64        /usr/lib/jvm/temurin-17-jdk-amd64
JAVA_HOME_21_X64        /usr/lib/jvm/temurin-21-jdk-amd64
JAVA_HOME_8_X64         /usr/lib/jvm/temurin-8-jdk-amd64
JOURNAL_STREAM          8:7454
LANG                    C.UTF-8
LD_LIBRARY_PATH         /opt/R/4.4.2/lib/R/lib:/usr/local/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/temurin-17-jdk-amd64/lib/server:/opt/R/4.4.2/lib/R/lib:/usr/local/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/temurin-17-jdk-amd64/lib/server
LN_S                    ln -s
LOGGER_LOG_LEVEL        DEBUG
MAKE                    make
MEMORY_PRESSURE_WATCH   /sys/fs/cgroup/system.slice/runner-provisioner.service/memory.pressure
MEMORY_PRESSURE_WRITE   c29tZSAyMDAwMDAgMjAwMDAwMAA=
NOT_CRAN                true
NVM_DIR                 /home/runner/.nvm
PAGER                   /usr/bin/pager
PATH                    /snap/bin:/home/runner/.local/bin:/opt/pipx_bin:/home/runner/.cargo/bin:/home/runner/.config/composer/vendor/bin:/usr/local/.ghcup/bin:/home/runner/.dotnet/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
PERFLOG_LOCATION_SETTING
                        RUNNER_PERFLOG
PHARMAPKGS_EXCLUDED_METRICS
                        assess_covr_coverage,assess_r_cmd_check
PHARMAPKGS_LIMIT        1000
PHARMAPKGS_PLATFORM     ubuntu-22.04
PHARMAPKGS_R_VERSION    4.4
PHARMAPKGS_REMOTE_REPO
                        https://cloud.r-project.org/
PIPX_BIN_DIR            /opt/pipx_bin
PIPX_HOME               /opt/pipx
PKGCACHE_HTTP_VERSION   2
PKGLOAD_PARENT_TEMPDIR
                        /tmp/RtmpCk6Ofc
POWERSHELL_DISTRIBUTION_CHANNEL
                        GitHub-Actions-ubuntu24
PROCESSX_PS1bc3548c6750_1739679160
                        YES
PWD                     /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_BIN_PATH         /opt/quarto/bin
QUARTO_DENO             /opt/quarto/bin/tools/x86_64/deno
QUARTO_DOCUMENT_PATH    /home/runner/work/pharmapkgs/pharmapkgs/inst/report
QUARTO_PROFILE          
QUARTO_PROJECT_DIR      /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_PROJECT_ROOT     /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_ROOT             /
QUARTO_SHARE_PATH       /opt/quarto/share
R_ARCH                  
R_BROWSER               xdg-open
R_BZIPCMD               /usr/bin/bzip2
R_DOC_DIR               /opt/R/4.4.2/lib/R/doc
R_GZIPCMD               /usr/bin/gzip
R_HOME                  /opt/R/4.4.2/lib/R
R_INCLUDE_DIR           /opt/R/4.4.2/lib/R/include
R_LIB_FOR_PAK           /opt/R/4.4.2/lib/R/site-library
R_LIBS_SITE             /opt/R/4.4.2/lib/R/site-library
R_LIBS_USER             /home/runner/work/_temp/Library
R_PAPERSIZE             letter
R_PAPERSIZE_USER        letter
R_PDFVIEWER             /usr/bin/xdg-open
R_PLATFORM              x86_64-pc-linux-gnu
R_PRINTCMD              /usr/bin/lpr
R_RD4PDF                times,inconsolata,hyper
R_SESSION_TMPDIR        /tmp/RtmpoOZtdX
R_SHARE_DIR             /opt/R/4.4.2/lib/R/share
R_STRIP_SHARED_LIB      strip --strip-unneeded
R_STRIP_STATIC_LIB      strip --strip-debug
R_TEXI2DVICMD           /usr/bin/texi2dvi
R_UNZIPCMD              /usr/bin/unzip
R_ZIPCMD                /usr/bin/zip
RUNNER_ARCH             X64
RUNNER_ENVIRONMENT      github-hosted
RUNNER_NAME             GitHub Actions 9
RUNNER_OS               Linux
RUNNER_PERFLOG          /home/runner/perflog
RUNNER_TEMP             /home/runner/work/_temp
RUNNER_TOOL_CACHE       /opt/hostedtoolcache
RUNNER_TRACKING_ID      github_d0120492-4873-4b13-9ede-fb6d0d82420b
RUNNER_USER             runner
RUNNER_WORKSPACE        /home/runner/work/pharmapkgs
SED                     /usr/bin/sed
SELENIUM_JAR_PATH       /usr/share/java/selenium-server.jar
SGX_AESM_ADDR           1
SHLVL                   1
STATS_D                 true
STATS_D_D               true
STATS_D_TC              true
STATS_EXT               true
STATS_EXTP              https://provjobdprod.z13.web.core.windows.net/settings/provjobdsettings-latest/provjobd.data
STATS_PIP               false
STATS_RDCL              true
STATS_TRP               true
STATS_UE                true
STATS_V3PS              true
STATS_VMD               true
STATS_VMFE              true
SWIFT_PATH              /usr/share/swift/usr/bin
SYSTEMD_EXEC_PID        829
TAR                     /usr/bin/tar
TZ                      UTC
USER                    runner
VCPKG_INSTALLATION_ROOT
                        /usr/local/share/vcpkg
XDG_CONFIG_HOME         /home/runner/.config
XDG_RUNTIME_DIR         /run/user/1001

These are the options set to generate the report:

$add.smooth
[1] TRUE

$bitmapType
[1] "cairo"

$browser
[1] "xdg-open"

$browserNLdisabled
[1] FALSE

$callr.condition_handler_cli_message
function (msg) 
{
    custom_handler <- getOption("cli.default_handler")
    if (is.function(custom_handler)) {
        custom_handler(msg)
    }
    else {
        cli_server_default(msg)
    }
}
<bytecode: 0x5619d10c8910>
<environment: namespace:cli>

$catch.script.errors
[1] FALSE

$CBoundsCheck
[1] FALSE

$check.bounds
[1] FALSE

$citation.bibtex.max
[1] 1

$continue
[1] "+ "

$contrasts
        unordered           ordered 
"contr.treatment"      "contr.poly" 

$covr.record_tests
[1] TRUE

$defaultPackages
[1] "datasets"  "utils"     "grDevices" "graphics"  "stats"     "methods"  

$demo.ask
[1] "default"

$deparse.cutoff
[1] 60

$device
function (width = 7, height = 7, ...) 
{
    grDevices::pdf(NULL, width, height, ...)
}
<bytecode: 0x5619d08481e0>
<environment: namespace:knitr>

$device.ask.default
[1] FALSE

$digits
[1] 7

$dvipscmd
[1] "dvips"

$echo
[1] FALSE

$editor
[1] "vi"

$encoding
[1] "native.enc"

$example.ask
[1] "default"

$expressions
[1] 5000

$help.search.types
[1] "vignette" "demo"     "help"    

$help.try.all.packages
[1] FALSE

$htmltools.preserve.raw
[1] TRUE

$HTTPUserAgent
[1] "R/4.4.2 R (4.4.2 x86_64-pc-linux-gnu x86_64 linux-gnu) on GitHub Actions"

$internet.info
[1] 2

$keep.parse.data
[1] TRUE

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[1] FALSE

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[1] FALSE

$keep.source.pkgs
[1] FALSE

$knitr.in.progress
[1] TRUE

$locatorBell
[1] TRUE

$mailer
[1] "mailto"

$matprod
[1] "default"

$max.contour.segments
[1] 25000

$max.print
[1] 99999

$menu.graphics
[1] TRUE

$na.action
[1] "na.omit"

$Ncpus
[1] 1

$nwarnings
[1] 50

$OutDec
[1] "."

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[1] "/opt/R/4.4.2/lib/R/bin/pager"

$papersize
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[1] NA

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[1] FALSE

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[1] TRUE

$pdfviewer
[1] "/usr/bin/xdg-open"

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[1] "source"

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[1] "/usr/bin/lpr"

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[1] "> "

$repos
                      CRAN 
"https://cran.rstudio.com" 

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$rlang_trace_top_env
<environment: R_GlobalEnv>

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[1] TRUE

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[1] TRUE

$show.signif.stars
[1] TRUE

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[1] TRUE

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[1] 50

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[1] FALSE

$str
$str$strict.width
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$str$list.len
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$str$deparse.lines
NULL

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$str$formatNum
function (x, ...) 
format(x, trim = TRUE, drop0trailing = TRUE, ...)
<environment: 0x5619d05a0520>


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$try.outFile
A connection with                    
description ""      
class       "file"  
mode        "w+b"   
text        "binary"
opened      "opened"
can read    "yes"   
can write   "yes"   

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[1] 1e-05

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[1] "/usr/bin/unzip"

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