Validation Report - caret@7.0.1
Context
This report is fully automated and builds on rhub/ref-image image. Documents the installation of this package on an open source R environment, focusing on:
- Installation environment description
- Testing coverage
It is limited to assess whether unit tests and documentation are present and can execute without error. An assessment would be required that the tests and documentation are meaningful.
Package caret
Metric based risk assessment
The following metrics are derived from the riskmetric R package.
| has_news | 0 |
| exported_namespace | 179 |
| has_vignettes | 2 |
| export_help | 179 |
| has_website | TRUE |
| has_maintainer | Max Kuhn mxkuhn@gmail.com |
| bugs_status | 0.2666667 |
| has_source_control | https://github.com/topepo/caret/ |
| has_bug_reports_url | 1 |
| downloads_1yr | 2050541 |
| reverse_dependencies | 339 |
| has_examples | 0.8877551 |
| dependencies | 16 |
| license | GPL (>= 2) |
Package general assessment: Coverage, check results, size, download the last year, reverse dependencies and number of dependencies.
Dependencies
Overall the package has these dependencies:
| package | type | |
|---|---|---|
| 1 | ggplot2 | Depends |
| 2 | lattice (>= 0.20) | Depends |
| 3 | e1071 | Imports |
| 4 | foreach | Imports |
| 5 | grDevices | Imports |
| 6 | methods | Imports |
| 7 | ModelMetrics (>= 1.2.2.2) | Imports |
| 8 | nlme | Imports |
| 9 | plyr | Imports |
| 10 | pROC | Imports |
| 11 | recipes (>= 0.1.10) | Imports |
| 12 | reshape2 | Imports |
| 13 | stats | Imports |
| 14 | stats4 | Imports |
| 15 | utils | Imports |
| 16 | withr (>= 2.0.0) | Imports |
Package dependencies
Reverse dependencies
Overall the package has 339 reverse dependencies:
adabag, AdaSampling, aggTrees, aLFQ, ampir, AnalysisLin, animalcules, AntAngioCOOL, AppliedPredictiveModeling, archetyper, ASML, assignPOP, autoBagging, AutoStepwiseGLM, aVirtualTwins, basemodels, BG2, BioM2, biomod2, biplotEZ, BLRShiny, BLRShiny2, BMisc, bnviewer, branchpointer, breakDown, broom, bspcov, bundle, butcher, caretEnsemble, caretForecast, CAST, cat2cat, cdgd, CEEMDANML, cellity, ciu, classifierplots, ClinicalUtilityRecal, CMShiny, cobalt, coca, combat.enigma, CondiS, condvis2, ConfusionTableR, ContaminatedMixt, CopulaCenR, counterfactuals, Coxmos, criticality, CSCNet, CTShiny, CTShiny2, CytoGLMM, cytominer, D2MCS, daltoolbox, DamiaNN, DaMiRseq, datafsm, dbcsp, DebiasInfer, DeepLearningCausal, DeProViR, dfr, discSurv, dissever, DMTL, DNAshapeR, doParallel, doSNOW, driveR, DSAM, dtComb, easyalluvial, eclust, Ecume, EMgaussian, ENMTools, EpiSemble, evalITR, EventDetectR, FACT, fairness, FAST.R, FastImputation, FastJM, FastRet, fdm2id, FeatureTerminatoR, FFTrees, flevr, FLORAL, flowml, fmeffects, fmf, fscaret, fullRankMatrix, FuncNN, FunctanSNP, fuseMLR, GAparsimony, GB5mcPred, gcplyr, genefu, geomod, glmtrans, glmtree, GPCMlasso, GWAS.BAYES, HaploCatcher, hdcate, heimdall, HPiP, HTRX, hypervolume, ibawds, icardaFIGSr, idiolect, idm, iForecast, iimi, ImFoR, iml, ImML, immunaut, imputeR, imt, ImVol, iNETgrate, Infusion, ipd, iprior, iSFun, JMH, JQL, KCSKNNShiny, KCSNBShiny, kfa, KMEANS.KNN, KNNShiny, KnowSeq, l1spectral, LassoGEE, latrend, less, lilikoi, LKT, LncFinder, loadeR, LPRelevance, lulcc, m2b, MAI, MAIT, mand, MantaID, manymodelr, maPredictDSC, matrans, MBMethPred, mcca, metabCombiner, MetabolomicsBasics, metaEnsembleR, metaforest, metamicrobiomeR, meteo, mgwrsar, MIC, microbiomeMarker, MiDA, mikropml, MiMIR, mistyR, MLDataR, MLInterfaces, mlmts, mlquantify, mlr, mlr3filters, mlr3spatiotempcv, MLSeq, mmb, MNLR, modelgrid, moreparty, mosaicModel, mpae, MRFcov, MRReg, MSclassifR, mshap, MSiP, mtlgmm, multiclassPairs, MUVR2, mxnorm, natstrat, NBShiny, NBShiny2, NBShiny3, nbTransmission, NEONiso, nestedcv, NeuralNetTools, NeuralSens, NHSRdatasets, noisemodel, nonet, NonProbEst, npcs, OddsPlotty, omu, OncoSubtype, oncrawlR, OOS, OpEnHiMR, opera, outliers.ts.oga, panelWranglR, pathwayTMB, pcvr, PDATK, pdp, peptoolkit, pheble, Pi, planningML, pmml, POMA, pomodoro, posterior, pprof, pre, preciseTAD, predfairness, PredPsych, predtoolsTS, PriceIndices, priorityelasticnet, pRoloc, promor, purgeR, r2pmml, RadialVisGadgets, randomForestSRC, RandPro, RankPCA, RaSEn, RCTrep, refitME, regsem, RelimpPCR, REMP, RGCCA, RISCA, rmda, rmlnomogram, robustcov, roseRF, rQSAR, rScudo, RStoolbox, rTLsDeep, Rtropical, sae.projection, sageR, SAiVE, SAMtool, scAnnotatR, scGPS, scR, sentometrics, SGCP, sgs, shinyr, sits, skedastic, SLEMI, SLOPE, SmartMeterAnalytics, SmCCNet, smdi, sMTL, SoftBart, soilassessment, spatialEco, SpatialML, spectacles, spFSR, sphereML, SPONGE, squallms, sregsurvey, ssc, SSLR, ssr, stabiliser, stacking, stepPenal, strip, studyStrap, SubCellBarCode, subsemble, SuperLearner, superml, supersigs, survcompare, survivalSL, SurvMetrics, SVMDO, swag, TBSignatureProfiler, TOP, tornado, TrafficBDE, transcriptR, tRigon, TSEAL, TSGS, UBayFS, varEst, varrank, vetiver, VIMPS, vivid, waterquality, WaveletGBM, WaveletKNN, WaveletLSTM, WaveletML, waves, waywiser, wconf, WMAP, WRTDStidal
Namespace
Overall the package has 179 exported objects. 179 are documented:
anovaScores avNNet bag
TRUE TRUE TRUE
bagControl bagEarth bagEarthStats
TRUE TRUE TRUE
bagFDA best BoxCoxTrans
TRUE TRUE TRUE
calibration caretFuncs caretGA
TRUE TRUE TRUE
caretSA caretSBF caretTheme
TRUE TRUE TRUE
cforestStats checkConditionalX checkInstall
TRUE TRUE TRUE
checkResamples class2ind classDist
TRUE TRUE TRUE
cluster compare_models confusionMatrix
TRUE TRUE TRUE
confusionMatrix.train contr.dummy contr.ltfr
TRUE TRUE TRUE
createDataPartition createFolds createModel
TRUE TRUE TRUE
createMultiFolds createResample createTimeSlices
TRUE TRUE TRUE
ctreeBag defaultSummary dotPlot
TRUE TRUE TRUE
downSample dummyVars expandParameters
TRUE TRUE TRUE
expoTrans extractPrediction extractProb
TRUE TRUE TRUE
F_meas featurePlot filterVarImp
TRUE TRUE TRUE
findCorrelation findLinearCombos flatTable
TRUE TRUE TRUE
gafs gafs_initial gafs_lrSelection
TRUE TRUE TRUE
gafs_raMutation gafs_rwSelection gafs_spCrossover
TRUE TRUE TRUE
gafs_tourSelection gafs_uCrossover gafs.default
TRUE TRUE TRUE
gafsControl gamFormula gamFuncs
TRUE TRUE TRUE
gamScores getModelInfo getSamplingInfo
TRUE TRUE TRUE
getTrainPerf ggplot.gafs ggplot.safs
TRUE TRUE TRUE
groupKFold hasTerms icr
TRUE TRUE TRUE
index2vec ipredStats knn3
TRUE TRUE TRUE
knn3Train knnreg knnregTrain
TRUE TRUE TRUE
ldaBag ldaFuncs ldaSBF
TRUE TRUE TRUE
learning_curve_dat lift lmFuncs
TRUE TRUE TRUE
lmSBF LPH07_1 LPH07_2
TRUE TRUE TRUE
lrFuncs MAE maxDissim
TRUE TRUE TRUE
MeanSD minDiss mnLogLoss
TRUE TRUE TRUE
modelCor modelLookup multiClassSummary
TRUE TRUE TRUE
nbBag nbFuncs nbSBF
TRUE TRUE TRUE
nearZeroVar negPredValue nnetBag
TRUE TRUE TRUE
nullModel nzv oneSE
TRUE TRUE TRUE
outcome_conversion panel.calibration panel.lift
TRUE TRUE TRUE
panel.lift2 panel.needle pcaNNet
TRUE TRUE TRUE
pickSizeBest pickSizeTolerance pickVars
TRUE TRUE TRUE
plot.gafs plot.rfe plot.safs
TRUE TRUE TRUE
plot.train plotClassProbs plotObsVsPred
TRUE TRUE TRUE
plsBag plsda posPredValue
TRUE TRUE TRUE
postResample precision predict.bagEarth
TRUE TRUE TRUE
predict.gafs predict.train predictionFunction
TRUE TRUE TRUE
predictors preProcess print.train
TRUE TRUE TRUE
probFunction progress prSummary
TRUE TRUE TRUE
R2 recall resampleHist
TRUE TRUE TRUE
resamples resampleSummary resampleWrapper
TRUE TRUE TRUE
rfe rfeControl rfeIter
TRUE TRUE TRUE
rfFuncs rfGA rfSA
TRUE TRUE TRUE
rfSBF rfStats RMSE
TRUE TRUE TRUE
safs safs_initial safs_perturb
TRUE TRUE TRUE
safs_prob safsControl sbf
TRUE TRUE TRUE
sbfControl sbfIter sensitivity
TRUE TRUE TRUE
SLC14_1 SLC14_2 sortImp
TRUE TRUE TRUE
spatialSign specificity splsda
TRUE TRUE TRUE
sumDiss summary.bagEarth svmBag
TRUE TRUE TRUE
thresholder tolerance train
TRUE TRUE TRUE
trainControl treebagFuncs treebagGA
TRUE TRUE TRUE
treebagSA treebagSBF twoClassSim
TRUE TRUE TRUE
twoClassSummary upSample var_seq
TRUE TRUE TRUE
varImp well_numbered
TRUE TRUE Examples
There are 87 help pages with examples, from 98 (88.78 %).
NEWS
The package has NEWS file and it is current.
License
The package uses .
Installation environment
System Info
| Field | Value |
|---|---|
| Image | rhub/ref-image |
| OS | Ubuntu 24.04.1 LTS |
| Platform | x86_64-pc-linux-gnu |
| System | x86_64, linux-gnu |
| Execution Time | 2025-02-22 03:20:58 UTC |
System information. Table about the system used to check the package.
R Session Info
Information about the R environment and capabilities:
R version 4.4.2 (2024-10-31)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 24.04.1 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so; LAPACK version 3.12.0
locale:
[1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8
[4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8
[7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C
time zone: UTC
tzcode source: system (glibc)
attached base packages:
[1] tools stats graphics grDevices utils datasets methods
[8] base
loaded via a namespace (and not attached):
[1] riskreports_0.0.0.9003 compiler_4.4.2 fastmap_1.2.0
[4] cli_3.6.4 htmltools_0.5.8.1 yaml_2.3.10
[7] rmarkdown_2.29 knitr_1.49 jsonlite_1.9.0
[10] xfun_0.51 digest_0.6.37 rlang_1.1.5
[13] evaluate_1.0.3 Platform used:
OS.type file.sep dynlib.ext GUI endian pkgType path.sep
"unix" "/" ".so" "X11" "little" "source" ":"
r_arch
"" R’s capabilities:
jpeg png tiff tcltk X11 aqua
TRUE TRUE TRUE TRUE FALSE FALSE
http/ftp sockets libxml fifo cledit iconv
TRUE TRUE FALSE TRUE FALSE TRUE
NLS Rprof profmem cairo ICU long.double
TRUE TRUE TRUE TRUE TRUE TRUE
libcurl
TRUE External software:
zlib
"1.3"
bzlib
"1.0.8, 13-Jul-2019"
xz
"5.4.5"
libdeflate
"1.19"
PCRE
"10.42 2022-12-11"
ICU
"74.2"
TRE
"TRE 0.8.0 R_fixes (BSD)"
iconv
"glibc 2.39"
readline
"8.2"
BLAS
"/usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3" Graphics external software:
cairo cairoFT pango
"1.18.0" "" "1.52.1"
libpng jpeg libtiff
"1.6.43" "8.0" "LIBTIFF, Version 4.5.1" Numerical characteristics of the machine:
double.eps double.neg.eps double.xmin
2.220446e-16 1.110223e-16 2.225074e-308
double.xmax double.base double.digits
1.797693e+308 2.000000e+00 5.300000e+01
double.rounding double.guard double.ulp.digits
5.000000e+00 0.000000e+00 -5.200000e+01
double.neg.ulp.digits double.exponent double.min.exp
-5.300000e+01 1.100000e+01 -1.022000e+03
double.max.exp integer.max sizeof.long
1.024000e+03 2.147484e+09 8.000000e+00
sizeof.longlong sizeof.longdouble sizeof.pointer
8.000000e+00 1.600000e+01 8.000000e+00
sizeof.time_t longdouble.eps longdouble.neg.eps
8.000000e+00 1.084202e-19 5.421011e-20
longdouble.digits longdouble.rounding longdouble.guard
6.400000e+01 5.000000e+00 0.000000e+00
longdouble.ulp.digits longdouble.neg.ulp.digits longdouble.exponent
-6.300000e+01 -6.400000e+01 1.500000e+01
longdouble.min.exp longdouble.max.exp
-1.638200e+04 1.638400e+04 Random number generation process:
[1] "Mersenne-Twister" "Inversion" "Rejection" Information about the environment
Environmental and options variables affect how package checks and software in it might behave. Here is the environmental variables when running this report
_R_CHECK_SYSTEM_CLOCK_
FALSE
ACCEPT_EULA Y
ACTIONS_RUNNER_ACTION_ARCHIVE_CACHE
/opt/actionarchivecache
AGENT_TOOLSDIRECTORY /opt/hostedtoolcache
ANDROID_HOME /usr/local/lib/android/sdk
ANDROID_NDK /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_HOME /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_LATEST_HOME
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ANDROID_NDK_ROOT /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_SDK_ROOT /usr/local/lib/android/sdk
ANT_HOME /usr/share/ant
AZURE_EXTENSION_DIR /opt/az/azcliextensions
BOOTSTRAP_HASKELL_NONINTERACTIVE
1
BUNDLE_EXT linux-amd64.deb
CHROME_BIN /usr/bin/google-chrome
CHROMEWEBDRIVER /usr/local/share/chromedriver-linux64
CI true
CONDA /usr/share/miniconda
DEBIAN_FRONTEND noninteractive
DENO_DOM_PLUGIN /opt/quarto/bin/tools/x86_64/deno_dom/libplugin.so
DENO_NO_UPDATE_CHECK 1
DENO_TLS_CA_STORE system,mozilla
DEPLOYMENT_BASEPATH /opt/runner
DOTNET_MULTILEVEL_LOOKUP
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DOTNET_NOLOGO 1
DOTNET_SKIP_FIRST_TIME_EXPERIENCE
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EDGEWEBDRIVER /usr/local/share/edge_driver
EDITOR vi
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GHCUP_INSTALL_BASE_PREFIX
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GITHUB_ACTION __run
GITHUB_ACTION_REF
GITHUB_ACTION_REPOSITORY
GITHUB_ACTIONS true
GITHUB_ACTOR llrs-roche
GITHUB_ACTOR_ID 185338939
GITHUB_API_URL https://api.github.com
GITHUB_BASE_REF
GITHUB_ENV /home/runner/work/_temp/_runner_file_commands/set_env_058c26cd-d6b5-4ab6-99c5-e0aa48adc255
GITHUB_EVENT_NAME schedule
GITHUB_EVENT_PATH /home/runner/work/_temp/_github_workflow/event.json
GITHUB_GRAPHQL_URL https://api.github.com/graphql
GITHUB_HEAD_REF
GITHUB_JOB main
GITHUB_OUTPUT /home/runner/work/_temp/_runner_file_commands/set_output_058c26cd-d6b5-4ab6-99c5-e0aa48adc255
GITHUB_PATH /home/runner/work/_temp/_runner_file_commands/add_path_058c26cd-d6b5-4ab6-99c5-e0aa48adc255
GITHUB_REF refs/heads/main
GITHUB_REF_NAME main
GITHUB_REF_PROTECTED false
GITHUB_REF_TYPE branch
GITHUB_REPOSITORY pharmaR/pharmapkgs
GITHUB_REPOSITORY_ID 798326913
GITHUB_REPOSITORY_OWNER
pharmaR
GITHUB_REPOSITORY_OWNER_ID
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GITHUB_RETENTION_DAYS 90
GITHUB_RUN_ATTEMPT 1
GITHUB_RUN_ID 13469038660
GITHUB_RUN_NUMBER 102
GITHUB_SERVER_URL https://github.com
GITHUB_SHA 2762e9764ccb07e23afdc6b4d96bc300f1ce9b9d
GITHUB_STATE /home/runner/work/_temp/_runner_file_commands/save_state_058c26cd-d6b5-4ab6-99c5-e0aa48adc255
GITHUB_STEP_SUMMARY /home/runner/work/_temp/_runner_file_commands/step_summary_058c26cd-d6b5-4ab6-99c5-e0aa48adc255
GITHUB_TRIGGERING_ACTOR
llrs-roche
GITHUB_WORKFLOW Update package repositories
GITHUB_WORKFLOW_REF pharmaR/pharmapkgs/.github/workflows/update-repos.yml@refs/heads/main
GITHUB_WORKFLOW_SHA 2762e9764ccb07e23afdc6b4d96bc300f1ce9b9d
GITHUB_WORKSPACE /home/runner/work/pharmapkgs/pharmapkgs
GOROOT_1_21_X64 /opt/hostedtoolcache/go/1.21.13/x64
GOROOT_1_22_X64 /opt/hostedtoolcache/go/1.22.12/x64
GOROOT_1_23_X64 /opt/hostedtoolcache/go/1.23.6/x64
GRADLE_HOME /usr/share/gradle-8.12.1
HOME /home/runner
HOMEBREW_CLEANUP_PERIODIC_FULL_DAYS
3650
HOMEBREW_NO_AUTO_UPDATE
1
ImageOS ubuntu24
ImageVersion 20250209.1.0
INVOCATION_ID 8bd3165f7e264726a5af349b42c1132e
JAVA_HOME /usr/lib/jvm/temurin-17-jdk-amd64
JAVA_HOME_11_X64 /usr/lib/jvm/temurin-11-jdk-amd64
JAVA_HOME_17_X64 /usr/lib/jvm/temurin-17-jdk-amd64
JAVA_HOME_21_X64 /usr/lib/jvm/temurin-21-jdk-amd64
JAVA_HOME_8_X64 /usr/lib/jvm/temurin-8-jdk-amd64
JOURNAL_STREAM 8:5911
LANG C.UTF-8
LD_LIBRARY_PATH /opt/R/4.4.2/lib/R/lib:/usr/local/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/temurin-17-jdk-amd64/lib/server:/opt/R/4.4.2/lib/R/lib:/usr/local/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/temurin-17-jdk-amd64/lib/server
LN_S ln -s
LOGGER_LOG_LEVEL DEBUG
MAKE make
MEMORY_PRESSURE_WATCH /sys/fs/cgroup/system.slice/runner-provisioner.service/memory.pressure
MEMORY_PRESSURE_WRITE c29tZSAyMDAwMDAgMjAwMDAwMAA=
NOT_CRAN true
NVM_DIR /home/runner/.nvm
PAGER /usr/bin/pager
PATH /snap/bin:/home/runner/.local/bin:/opt/pipx_bin:/home/runner/.cargo/bin:/home/runner/.config/composer/vendor/bin:/usr/local/.ghcup/bin:/home/runner/.dotnet/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
PERFLOG_LOCATION_SETTING
RUNNER_PERFLOG
PHARMAPKGS_EXCLUDED_METRICS
assess_covr_coverage,assess_r_cmd_check
PHARMAPKGS_LIMIT 100
PHARMAPKGS_PLATFORM ubuntu-22.04
PHARMAPKGS_R_VERSION 4.4
PHARMAPKGS_REMOTE_REPO
https://cloud.r-project.org/
PIPX_BIN_DIR /opt/pipx_bin
PIPX_HOME /opt/pipx
PKGCACHE_HTTP_VERSION 2
PKGLOAD_PARENT_TEMPDIR
/tmp/RtmpazFpm9
POWERSHELL_DISTRIBUTION_CHANNEL
GitHub-Actions-ubuntu24
PROCESSX_PS1dbb7d13b755_1740194454
YES
PWD /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_BIN_PATH /opt/quarto/bin
QUARTO_DENO /opt/quarto/bin/tools/x86_64/deno
QUARTO_DOCUMENT_PATH /home/runner/work/pharmapkgs/pharmapkgs/inst/report
QUARTO_PROFILE
QUARTO_PROJECT_DIR /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_PROJECT_ROOT /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_ROOT /
QUARTO_SHARE_PATH /opt/quarto/share
R_ARCH
R_BROWSER xdg-open
R_BZIPCMD /usr/bin/bzip2
R_DOC_DIR /opt/R/4.4.2/lib/R/doc
R_GZIPCMD /usr/bin/gzip
R_HOME /opt/R/4.4.2/lib/R
R_INCLUDE_DIR /opt/R/4.4.2/lib/R/include
R_LIB_FOR_PAK /opt/R/4.4.2/lib/R/site-library
R_LIBS_SITE /opt/R/4.4.2/lib/R/site-library
R_LIBS_USER /home/runner/work/_temp/Library
R_PAPERSIZE letter
R_PAPERSIZE_USER letter
R_PDFVIEWER /usr/bin/xdg-open
R_PLATFORM x86_64-pc-linux-gnu
R_PRINTCMD /usr/bin/lpr
R_RD4PDF times,inconsolata,hyper
R_SESSION_TMPDIR /tmp/RtmpkelzeH
R_SHARE_DIR /opt/R/4.4.2/lib/R/share
R_STRIP_SHARED_LIB strip --strip-unneeded
R_STRIP_STATIC_LIB strip --strip-debug
R_TEXI2DVICMD /usr/bin/texi2dvi
R_UNZIPCMD /usr/bin/unzip
R_ZIPCMD /usr/bin/zip
RUNNER_ARCH X64
RUNNER_ENVIRONMENT github-hosted
RUNNER_NAME GitHub Actions 6
RUNNER_OS Linux
RUNNER_PERFLOG /home/runner/perflog
RUNNER_TEMP /home/runner/work/_temp
RUNNER_TOOL_CACHE /opt/hostedtoolcache
RUNNER_TRACKING_ID github_22b6cff0-eea4-4f3a-9199-a747a1c52b9d
RUNNER_USER runner
RUNNER_WORKSPACE /home/runner/work/pharmapkgs
SED /usr/bin/sed
SELENIUM_JAR_PATH /usr/share/java/selenium-server.jar
SGX_AESM_ADDR 1
SHLVL 1
STATS_D true
STATS_D_D true
STATS_D_TC true
STATS_EXT true
STATS_EXTP https://provjobdprod.z13.web.core.windows.net/settings/provjobdsettings-latest/provjobd.data
STATS_PIP false
STATS_RDCL true
STATS_TRP true
STATS_UE true
STATS_V3PS true
STATS_VMD true
STATS_VMFE true
SWIFT_PATH /usr/share/swift/usr/bin
SYSTEMD_EXEC_PID 833
TAR /usr/bin/tar
TZ UTC
USER runner
VCPKG_INSTALLATION_ROOT
/usr/local/share/vcpkg
XDG_CONFIG_HOME /home/runner/.config
XDG_RUNTIME_DIR /run/user/1001These are the options set to generate the report:
$add.smooth
[1] TRUE
$bitmapType
[1] "cairo"
$browser
[1] "xdg-open"
$browserNLdisabled
[1] FALSE
$callr.condition_handler_cli_message
function (msg)
{
custom_handler <- getOption("cli.default_handler")
if (is.function(custom_handler)) {
custom_handler(msg)
}
else {
cli_server_default(msg)
}
}
<bytecode: 0x5628ab8cd910>
<environment: namespace:cli>
$catch.script.errors
[1] FALSE
$CBoundsCheck
[1] FALSE
$check.bounds
[1] FALSE
$citation.bibtex.max
[1] 1
$continue
[1] "+ "
$contrasts
unordered ordered
"contr.treatment" "contr.poly"
$covr.record_tests
[1] TRUE
$defaultPackages
[1] "datasets" "utils" "grDevices" "graphics" "stats" "methods"
$demo.ask
[1] "default"
$deparse.cutoff
[1] 60
$device
function (width = 7, height = 7, ...)
{
grDevices::pdf(NULL, width, height, ...)
}
<bytecode: 0x5628aaf90770>
<environment: namespace:knitr>
$device.ask.default
[1] FALSE
$digits
[1] 7
$dvipscmd
[1] "dvips"
$echo
[1] FALSE
$editor
[1] "vi"
$encoding
[1] "native.enc"
$example.ask
[1] "default"
$expressions
[1] 5000
$help.search.types
[1] "vignette" "demo" "help"
$help.try.all.packages
[1] FALSE
$htmltools.preserve.raw
[1] TRUE
$HTTPUserAgent
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$internet.info
[1] 2
$keep.parse.data
[1] TRUE
$keep.parse.data.pkgs
[1] FALSE
$keep.source
[1] FALSE
$keep.source.pkgs
[1] FALSE
$knitr.in.progress
[1] TRUE
$locatorBell
[1] TRUE
$mailer
[1] "mailto"
$matprod
[1] "default"
$max.contour.segments
[1] 25000
$max.print
[1] 99999
$menu.graphics
[1] TRUE
$na.action
[1] "na.omit"
$Ncpus
[1] 1
$nwarnings
[1] 50
$OutDec
[1] "."
$pager
[1] "/opt/R/4.4.2/lib/R/bin/pager"
$papersize
[1] "letter"
$PCRE_limit_recursion
[1] NA
$PCRE_study
[1] FALSE
$PCRE_use_JIT
[1] TRUE
$pdfviewer
[1] "/usr/bin/xdg-open"
$pkgType
[1] "source"
$printcmd
[1] "/usr/bin/lpr"
$prompt
[1] "> "
$repos
CRAN
"https://cran.rstudio.com"
$rl_word_breaks
[1] " \t\n\"\\'`><=%;,|&{()}"
$rlang_trace_top_env
<environment: R_GlobalEnv>
$scipen
[1] 0
$show.coef.Pvalues
[1] TRUE
$show.error.messages
[1] TRUE
$show.signif.stars
[1] TRUE
$showErrorCalls
[1] TRUE
$showNCalls
[1] 50
$showWarnCalls
[1] FALSE
$str
$str$strict.width
[1] "no"
$str$digits.d
[1] 3
$str$vec.len
[1] 4
$str$list.len
[1] 99
$str$deparse.lines
NULL
$str$drop.deparse.attr
[1] TRUE
$str$formatNum
function (x, ...)
format(x, trim = TRUE, drop0trailing = TRUE, ...)
<environment: 0x5628aada5520>
$str.dendrogram.last
[1] "`"
$texi2dvi
[1] "/usr/bin/texi2dvi"
$tikzMetricsDictionary
[1] "validation_report_caret_v7.0.1-tikzDictionary"
$timeout
[1] 60
$try.outFile
A connection with
description ""
class "file"
mode "w+b"
text "binary"
opened "opened"
can read "yes"
can write "yes"
$ts.eps
[1] 1e-05
$ts.S.compat
[1] FALSE
$unzip
[1] "/usr/bin/unzip"
$useFancyQuotes
[1] FALSE
$verbose
[1] FALSE
$warn
[1] 0
$warning.length
[1] 1000
$warnPartialMatchArgs
[1] FALSE
$warnPartialMatchAttr
[1] FALSE
$warnPartialMatchDollar
[1] FALSE
$width
[1] 80