Validation Report - caracas@2.1.1
Context
This report is fully automated and builds on rhub/ref-image image. Documents the installation of this package on an open source R environment, focusing on:
- Installation environment description
- Testing coverage
It is limited to assess whether unit tests and documentation are present and can execute without error. An assessment would be required that the tests and documentation are meaningful.
Package caracas
Metric based risk assessment
The following metrics are derived from the riskmetric R package.
| has_news | 1 |
| news_current | TRUE |
| exported_namespace | 106 |
| has_vignettes | 20 |
| export_help | 107 |
| has_website | TRUE |
| has_maintainer | Mikkel Meyer Andersen mikl@math.aau.dk |
| bugs_status | subscript out of bounds |
| has_source_control | https://github.com/r-cas/caracas |
| has_bug_reports_url | 1 |
| downloads_1yr | 5666 |
| reverse_dependencies | 1 |
| has_examples | 0.9896907 |
| dependencies | 5 |
| license | GPL |
Package general assessment: Coverage, check results, size, download the last year, reverse dependencies and number of dependencies.
Dependencies
Overall the package has these dependencies:
| package | type | |
|---|---|---|
| 1 | methods | Depends |
| 2 | reticulate (>= 1.14) | Imports |
| 3 | Matrix | Imports |
| 4 | doBy (>= 4.6.15) | Imports |
| 5 | magrittr | Imports |
Package dependencies
Reverse dependencies
Overall the package has 1 reverse dependencies:
symSEM
Namespace
Overall the package has 106 exported objects. 104 are documented:
%*% %>% add_prefix
FALSE FALSE TRUE
all_vars apart as_character
TRUE TRUE TRUE
as_character_matrix as_diag as_expr
TRUE TRUE TRUE
as_func as_sym as_vec
TRUE TRUE TRUE
ask cancel collect
TRUE TRUE TRUE
colspan colSums_ columnspace
TRUE TRUE TRUE
crossprod_ def_sym def_sym_vec
TRUE TRUE TRUE
denominator der der2
TRUE TRUE TRUE
det diag diag_
TRUE TRUE TRUE
diag<- diff_mat do_la
TRUE TRUE TRUE
doit drop_remainder eigenval
TRUE TRUE TRUE
eigenvec eval_to_symbol expand
TRUE TRUE TRUE
expand_func expand_log expand_trig
TRUE TRUE TRUE
eye_sym factor_ fraction_parts
TRUE TRUE TRUE
free_symbols get_basis get_py
TRUE TRUE TRUE
get_sympy GramSchmidt has_sympy
TRUE TRUE TRUE
hessian install_sympy int
TRUE TRUE TRUE
inv is_sym jacobian
TRUE TRUE TRUE
lim listify ls_sym
TRUE TRUE TRUE
LUdecomposition mat_pow matrify
TRUE TRUE TRUE
matrix_ matrix_sym matrix_sym_diag
TRUE TRUE TRUE
matrix_sym_symmetric N nullspace
TRUE TRUE TRUE
numerator ones_sym pinv
TRUE TRUE TRUE
prod_ QRdecomposition rankMatrix_
TRUE TRUE TRUE
reciprocal_matrix rowspace rowSums_
TRUE TRUE TRUE
rref scale_matrix score
TRUE TRUE TRUE
simplify singular_values solve_lin
TRUE TRUE TRUE
solve_sys subs sum_
TRUE TRUE TRUE
svd_ sym_class sym_inherits
TRUE TRUE TRUE
symbol symbol_class symbol_is_matrix
TRUE TRUE TRUE
sympy_func sympy_version taylor
TRUE TRUE TRUE
tcrossprod_ tex texshow
TRUE TRUE TRUE
to_list to_matrix to_vector
TRUE TRUE TRUE
trace_ tuplify unbracket
TRUE TRUE TRUE
unscale_matrix vector_sym vectorfy
TRUE TRUE TRUE
zeros_sym
TRUE Examples
There are 96 help pages with examples, from 97 (98.97 %).
NEWS
The package has NEWS file and it is current.
License
The package uses .
Installation environment
System Info
| Field | Value |
|---|---|
| Image | rhub/ref-image |
| OS | Ubuntu 24.04.1 LTS |
| Platform | x86_64-pc-linux-gnu |
| System | x86_64, linux-gnu |
| Execution Time | 2025-02-16 03:40:01 UTC |
System information. Table about the system used to check the package.
R Session Info
Information about the R environment and capabilities:
R version 4.4.2 (2024-10-31)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 24.04.1 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so; LAPACK version 3.12.0
locale:
[1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8
[4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8
[7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C
time zone: UTC
tzcode source: system (glibc)
attached base packages:
[1] tools stats graphics grDevices utils datasets methods
[8] base
loaded via a namespace (and not attached):
[1] riskreports_0.0.0.9003 compiler_4.4.2 fastmap_1.2.0
[4] cli_3.6.4 htmltools_0.5.8.1 yaml_2.3.10
[7] rmarkdown_2.29 knitr_1.49 jsonlite_1.8.9
[10] xfun_0.50 digest_0.6.37 rlang_1.1.5
[13] evaluate_1.0.3 Platform used:
OS.type file.sep dynlib.ext GUI endian pkgType path.sep
"unix" "/" ".so" "X11" "little" "source" ":"
r_arch
"" R’s capabilities:
jpeg png tiff tcltk X11 aqua
TRUE TRUE TRUE TRUE FALSE FALSE
http/ftp sockets libxml fifo cledit iconv
TRUE TRUE FALSE TRUE FALSE TRUE
NLS Rprof profmem cairo ICU long.double
TRUE TRUE TRUE TRUE TRUE TRUE
libcurl
TRUE External software:
zlib
"1.3"
bzlib
"1.0.8, 13-Jul-2019"
xz
"5.4.5"
libdeflate
"1.19"
PCRE
"10.42 2022-12-11"
ICU
"74.2"
TRE
"TRE 0.8.0 R_fixes (BSD)"
iconv
"glibc 2.39"
readline
"8.2"
BLAS
"/usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3" Graphics external software:
cairo cairoFT pango
"1.18.0" "" "1.52.1"
libpng jpeg libtiff
"1.6.43" "8.0" "LIBTIFF, Version 4.5.1" Numerical characteristics of the machine:
double.eps double.neg.eps double.xmin
2.220446e-16 1.110223e-16 2.225074e-308
double.xmax double.base double.digits
1.797693e+308 2.000000e+00 5.300000e+01
double.rounding double.guard double.ulp.digits
5.000000e+00 0.000000e+00 -5.200000e+01
double.neg.ulp.digits double.exponent double.min.exp
-5.300000e+01 1.100000e+01 -1.022000e+03
double.max.exp integer.max sizeof.long
1.024000e+03 2.147484e+09 8.000000e+00
sizeof.longlong sizeof.longdouble sizeof.pointer
8.000000e+00 1.600000e+01 8.000000e+00
sizeof.time_t longdouble.eps longdouble.neg.eps
8.000000e+00 1.084202e-19 5.421011e-20
longdouble.digits longdouble.rounding longdouble.guard
6.400000e+01 5.000000e+00 0.000000e+00
longdouble.ulp.digits longdouble.neg.ulp.digits longdouble.exponent
-6.300000e+01 -6.400000e+01 1.500000e+01
longdouble.min.exp longdouble.max.exp
-1.638200e+04 1.638400e+04 Random number generation process:
[1] "Mersenne-Twister" "Inversion" "Rejection" Information about the environment
Environmental and options variables affect how package checks and software in it might behave. Here is the environmental variables when running this report
_R_CHECK_SYSTEM_CLOCK_
FALSE
ACCEPT_EULA Y
ACTIONS_RUNNER_ACTION_ARCHIVE_CACHE
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GITHUB_TRIGGERING_ACTOR
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HOMEBREW_CLEANUP_PERIODIC_FULL_DAYS
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HOMEBREW_NO_AUTO_UPDATE
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LN_S ln -s
LOGGER_LOG_LEVEL DEBUG
MAKE make
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PERFLOG_LOCATION_SETTING
RUNNER_PERFLOG
PHARMAPKGS_EXCLUDED_METRICS
assess_covr_coverage,assess_r_cmd_check
PHARMAPKGS_LIMIT 1000
PHARMAPKGS_PLATFORM ubuntu-22.04
PHARMAPKGS_R_VERSION 4.4
PHARMAPKGS_REMOTE_REPO
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PKGCACHE_HTTP_VERSION 2
PKGLOAD_PARENT_TEMPDIR
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POWERSHELL_DISTRIBUTION_CHANNEL
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YES
PWD /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_BIN_PATH /opt/quarto/bin
QUARTO_DENO /opt/quarto/bin/tools/x86_64/deno
QUARTO_DOCUMENT_PATH /home/runner/work/pharmapkgs/pharmapkgs/inst/report
QUARTO_PROFILE
QUARTO_PROJECT_DIR /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_PROJECT_ROOT /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_ROOT /
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R_PLATFORM x86_64-pc-linux-gnu
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TZ UTC
USER runner
VCPKG_INSTALLATION_ROOT
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XDG_CONFIG_HOME /home/runner/.config
XDG_RUNTIME_DIR /run/user/1001These are the options set to generate the report:
$add.smooth
[1] TRUE
$bitmapType
[1] "cairo"
$browser
[1] "xdg-open"
$browserNLdisabled
[1] FALSE
$callr.condition_handler_cli_message
function (msg)
{
custom_handler <- getOption("cli.default_handler")
if (is.function(custom_handler)) {
custom_handler(msg)
}
else {
cli_server_default(msg)
}
}
<bytecode: 0x55d3b705e910>
<environment: namespace:cli>
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unordered ordered
"contr.treatment" "contr.poly"
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$demo.ask
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$device
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{
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}
<bytecode: 0x55d3b6991740>
<environment: namespace:knitr>
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[1] TRUE
$locatorBell
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$matprod
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$pdfviewer
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$pkgType
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$printcmd
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$prompt
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$repos
CRAN
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$rl_word_breaks
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$rlang_trace_top_env
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$scipen
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$show.coef.Pvalues
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$show.error.messages
[1] TRUE
$show.signif.stars
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$showErrorCalls
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$str
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$str$digits.d
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$str$vec.len
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$str$list.len
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$str$deparse.lines
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$str$drop.deparse.attr
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$str$formatNum
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<environment: 0x55d3b6536520>
$str.dendrogram.last
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$texi2dvi
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$tikzMetricsDictionary
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$timeout
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$try.outFile
A connection with
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mode "w+b"
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opened "opened"
can read "yes"
can write "yes"
$ts.eps
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$ts.S.compat
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$unzip
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$warning.length
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$width
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