Validation Report - broom.helpers@1.20.0
Context
This report is fully automated and builds on rhub/ref-image image. Documents the installation of this package on an open source R environment, focusing on:
- Installation environment description
- Testing coverage
It is limited to assess whether unit tests and documentation are present and can execute without error. An assessment would be required that the tests and documentation are meaningful.
Package broom.helpers
Metric based risk assessment
The following metrics are derived from the riskmetric R package.
| has_news | 1 |
| news_current | TRUE |
| exported_namespace | 90 |
| has_vignettes | 2 |
| export_help | 90 |
| has_website | TRUE |
| has_maintainer | Joseph Larmarange joseph@larmarange.net |
| bugs_status | 1 |
| assess_size_codebase | 4283 |
| has_source_control | https://github.com/larmarange/broom.helpers |
| has_bug_reports_url | 1 |
| downloads_1yr | 686779 |
| reverse_dependencies | 14 |
| has_examples | 0.983871 |
| dependencies | 13 |
| license | GPL (>= 3) |
Package general assessment: Coverage, check results, size, download the last year, reverse dependencies and number of dependencies.
Dependencies
Overall the package has these dependencies:
| package | type | |
|---|---|---|
| 1 | broom (>= 0.8) | Imports |
| 2 | cards | Imports |
| 3 | cli | Imports |
| 4 | dplyr (>= 1.1.0) | Imports |
| 5 | labelled | Imports |
| 6 | lifecycle | Imports |
| 7 | purrr | Imports |
| 8 | rlang (>= 1.0.1) | Imports |
| 9 | stats | Imports |
| 10 | stringr | Imports |
| 11 | tibble | Imports |
| 12 | tidyr | Imports |
| 13 | tidyselect | Imports |
Package dependencies
Reverse dependencies
Overall the package has 14 reverse dependencies:
cardx, dcurves, GGally, ggstats, gtsummary, guideR, iNZightRegression, logitr, mmrm, pubh, regport, simstudy, smdi, tidycmprsk
Namespace
Overall the package has 90 exported objects. 90 are documented:
.assert_package .clean_backticks
TRUE TRUE
.escape_regex .formula_list_to_named_list
TRUE TRUE
.generic_selector .get_all_packages_dependencies
TRUE TRUE
.get_min_version_required .get_package_dependencies
TRUE TRUE
.is_selector_scoped .select_to_varnames
TRUE TRUE
all_categorical all_continuous
TRUE TRUE
all_contrasts all_dichotomous
TRUE TRUE
all_interaction all_intercepts
TRUE TRUE
all_of all_ran_pars
TRUE TRUE
all_ran_vals any_of
TRUE TRUE
auto_group_by contains
TRUE TRUE
ends_with everything
TRUE TRUE
last_col matches
TRUE TRUE
model_compute_terms_contributions model_get_assign
TRUE TRUE
model_get_coefficients_type model_get_contrasts
TRUE TRUE
model_get_model model_get_model_frame
TRUE TRUE
model_get_model_matrix model_get_n
TRUE TRUE
model_get_nlevels model_get_offset
TRUE TRUE
model_get_pairwise_contrasts model_get_response
TRUE TRUE
model_get_response_variable model_get_terms
TRUE TRUE
model_get_weights model_get_xlevels
TRUE TRUE
model_identify_variables model_list_contrasts
TRUE TRUE
model_list_higher_order_variables model_list_terms_levels
TRUE TRUE
model_list_variables num_range
TRUE TRUE
one_of plot_marginal_predictions
TRUE TRUE
scope_tidy seq_range
TRUE TRUE
starts_with tidy_add_coefficients_type
TRUE TRUE
tidy_add_contrasts tidy_add_estimate_to_reference_rows
TRUE TRUE
tidy_add_header_rows tidy_add_n
TRUE TRUE
tidy_add_pairwise_contrasts tidy_add_reference_rows
TRUE TRUE
tidy_add_term_labels tidy_add_variable_labels
TRUE TRUE
tidy_all_effects tidy_and_attach
TRUE TRUE
tidy_attach_model tidy_avg_comparisons
TRUE TRUE
tidy_avg_slopes tidy_broom
TRUE TRUE
tidy_detach_model tidy_disambiguate_terms
TRUE TRUE
tidy_get_model tidy_ggpredict
TRUE TRUE
tidy_group_by tidy_identify_variables
TRUE TRUE
tidy_marginal_contrasts tidy_marginal_means
TRUE TRUE
tidy_marginal_predictions tidy_margins
TRUE TRUE
tidy_multgee tidy_parameters
TRUE TRUE
tidy_plus_plus tidy_remove_intercept
TRUE TRUE
tidy_select_variables tidy_vgam
TRUE TRUE
tidy_with_broom_or_parameters tidy_zeroinfl
TRUE TRUE
variables_to_contrast variables_to_predict
TRUE TRUE
vars where
TRUE TRUE Examples
There are 61 help pages with examples, from 62 (98.39 %).
NEWS
The package has NEWS file and it is current.
License
The package uses .
Installation environment
System Info
| Field | Value |
|---|---|
| Image | rhub/ref-image |
| OS | Ubuntu 24.04.2 LTS |
| Platform | x86_64-pc-linux-gnu |
| System | x86_64, linux-gnu |
| Execution Time | 2025-03-14 03:27:33 UTC |
System information. Table about the system used to check the package.
R Session Info
Information about the R environment and capabilities:
R version 4.4.3 (2025-02-28)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 24.04.2 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so; LAPACK version 3.12.0
locale:
[1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8
[4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8
[7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C
time zone: UTC
tzcode source: system (glibc)
attached base packages:
[1] tools stats graphics grDevices utils datasets methods
[8] base
loaded via a namespace (and not attached):
[1] riskreports_0.0.0.9003 compiler_4.4.3 fastmap_1.2.0
[4] cli_3.6.4 htmltools_0.5.8.1 yaml_2.3.10
[7] rmarkdown_2.29 knitr_1.49 jsonlite_1.9.1
[10] xfun_0.51 digest_0.6.37 rlang_1.1.5
[13] evaluate_1.0.3 Platform used:
OS.type file.sep dynlib.ext GUI endian pkgType path.sep
"unix" "/" ".so" "X11" "little" "source" ":"
r_arch
"" R’s capabilities:
jpeg png tiff tcltk X11 aqua
TRUE TRUE TRUE TRUE FALSE FALSE
http/ftp sockets libxml fifo cledit iconv
TRUE TRUE FALSE TRUE FALSE TRUE
NLS Rprof profmem cairo ICU long.double
TRUE TRUE TRUE TRUE TRUE TRUE
libcurl
TRUE External software:
zlib
"1.3"
bzlib
"1.0.8, 13-Jul-2019"
xz
"5.4.5"
libdeflate
"1.19"
PCRE
"10.42 2022-12-11"
ICU
"74.2"
TRE
"TRE 0.8.0 R_fixes (BSD)"
iconv
"glibc 2.39"
readline
"8.2"
BLAS
"/usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3" Graphics external software:
cairo cairoFT pango
"1.18.0" "" "1.52.1"
libpng jpeg libtiff
"1.6.43" "8.0" "LIBTIFF, Version 4.5.1" Numerical characteristics of the machine:
double.eps double.neg.eps double.xmin
2.220446e-16 1.110223e-16 2.225074e-308
double.xmax double.base double.digits
1.797693e+308 2.000000e+00 5.300000e+01
double.rounding double.guard double.ulp.digits
5.000000e+00 0.000000e+00 -5.200000e+01
double.neg.ulp.digits double.exponent double.min.exp
-5.300000e+01 1.100000e+01 -1.022000e+03
double.max.exp integer.max sizeof.long
1.024000e+03 2.147484e+09 8.000000e+00
sizeof.longlong sizeof.longdouble sizeof.pointer
8.000000e+00 1.600000e+01 8.000000e+00
sizeof.time_t longdouble.eps longdouble.neg.eps
8.000000e+00 1.084202e-19 5.421011e-20
longdouble.digits longdouble.rounding longdouble.guard
6.400000e+01 5.000000e+00 0.000000e+00
longdouble.ulp.digits longdouble.neg.ulp.digits longdouble.exponent
-6.300000e+01 -6.400000e+01 1.500000e+01
longdouble.min.exp longdouble.max.exp
-1.638200e+04 1.638400e+04 Random number generation process:
[1] "Mersenne-Twister" "Inversion" "Rejection" Information about the environment
Environmental and options variables affect how package checks and software in it might behave. Here is the environmental variables when running this report
_R_CHECK_SYSTEM_CLOCK_
FALSE
ACCEPT_EULA Y
ACTIONS_RUNNER_ACTION_ARCHIVE_CACHE
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AGENT_TOOLSDIRECTORY /opt/hostedtoolcache
ANDROID_HOME /usr/local/lib/android/sdk
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ANDROID_NDK_HOME /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_LATEST_HOME
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ANDROID_NDK_ROOT /usr/local/lib/android/sdk/ndk/27.2.12479018
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ANT_HOME /usr/share/ant
AZURE_EXTENSION_DIR /opt/az/azcliextensions
BOOTSTRAP_HASKELL_NONINTERACTIVE
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BUNDLE_EXT linux-amd64.deb
CHROME_BIN /usr/bin/google-chrome
CHROMEWEBDRIVER /usr/local/share/chromedriver-linux64
CI true
CONDA /usr/share/miniconda
DEBIAN_FRONTEND noninteractive
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DENO_NO_UPDATE_CHECK 1
DENO_TLS_CA_STORE system,mozilla
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DOTNET_MULTILEVEL_LOOKUP
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GITHUB_REF_TYPE branch
GITHUB_REPOSITORY pharmaR/pharmapkgs
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GITHUB_STEP_SUMMARY /home/runner/work/_temp/_runner_file_commands/step_summary_35fa6bbb-61f7-46c6-bfa7-b11c9a45dd6b
GITHUB_TRIGGERING_ACTOR
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GITHUB_WORKFLOW Update package repositories
GITHUB_WORKFLOW_REF pharmaR/pharmapkgs/.github/workflows/update-repos.yml@refs/heads/main
GITHUB_WORKFLOW_SHA cd2aa3d897be31c10b200e93da24712e8b0fbab1
GITHUB_WORKSPACE /home/runner/work/pharmapkgs/pharmapkgs
GOROOT_1_21_X64 /opt/hostedtoolcache/go/1.21.13/x64
GOROOT_1_22_X64 /opt/hostedtoolcache/go/1.22.12/x64
GOROOT_1_23_X64 /opt/hostedtoolcache/go/1.23.7/x64
GRADLE_HOME /usr/share/gradle-8.13
HOME /home/runner
HOMEBREW_CLEANUP_PERIODIC_FULL_DAYS
3650
HOMEBREW_NO_AUTO_UPDATE
1
ImageOS ubuntu24
ImageVersion 20250309.1.0
INVOCATION_ID 9d113ec6dfde453695a0e16866091f43
JAVA_HOME /usr/lib/jvm/temurin-17-jdk-amd64
JAVA_HOME_11_X64 /usr/lib/jvm/temurin-11-jdk-amd64
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JAVA_HOME_21_X64 /usr/lib/jvm/temurin-21-jdk-amd64
JAVA_HOME_8_X64 /usr/lib/jvm/temurin-8-jdk-amd64
JOURNAL_STREAM 8:6519
LANG C.UTF-8
LD_LIBRARY_PATH /opt/R/4.4.3/lib/R/lib:/usr/local/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/temurin-17-jdk-amd64/lib/server:/opt/R/4.4.3/lib/R/lib:/usr/local/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/temurin-17-jdk-amd64/lib/server
LN_S ln -s
LOGGER_LOG_LEVEL DEBUG
MAKE make
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MEMORY_PRESSURE_WRITE c29tZSAyMDAwMDAgMjAwMDAwMAA=
NOT_CRAN true
NVM_DIR /home/runner/.nvm
PAGER /usr/bin/pager
PATH /snap/bin:/home/runner/.local/bin:/opt/pipx_bin:/home/runner/.cargo/bin:/home/runner/.config/composer/vendor/bin:/usr/local/.ghcup/bin:/home/runner/.dotnet/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
PERFLOG_LOCATION_SETTING
RUNNER_PERFLOG
PHARMAPKGS_EXCLUDED_METRICS
assess_covr_coverage,assess_r_cmd_check
PHARMAPKGS_LIMIT 100
PHARMAPKGS_PLATFORM ubuntu-22.04
PHARMAPKGS_R_VERSION 4.4
PHARMAPKGS_REMOTE_REPO
https://cloud.r-project.org/
PIPX_BIN_DIR /opt/pipx_bin
PIPX_HOME /opt/pipx
PKGCACHE_HTTP_VERSION 2
PKGLOAD_PARENT_TEMPDIR
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POWERSHELL_DISTRIBUTION_CHANNEL
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PROCESSX_PS1d74236725ac_1741922849
YES
PWD /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_BIN_PATH /opt/quarto/bin
QUARTO_DENO /opt/quarto/bin/tools/x86_64/deno
QUARTO_DOCUMENT_PATH /home/runner/work/pharmapkgs/pharmapkgs/inst/report
QUARTO_PROFILE
QUARTO_PROJECT_DIR /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_PROJECT_ROOT /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_ROOT /
QUARTO_SHARE_PATH /opt/quarto/share
R_ARCH
R_BROWSER xdg-open
R_BZIPCMD /usr/bin/bzip2
R_DOC_DIR /opt/R/4.4.3/lib/R/doc
R_GZIPCMD /usr/bin/gzip
R_HOME /opt/R/4.4.3/lib/R
R_INCLUDE_DIR /opt/R/4.4.3/lib/R/include
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R_PAPERSIZE letter
R_PAPERSIZE_USER letter
R_PDFVIEWER /usr/bin/xdg-open
R_PLATFORM x86_64-pc-linux-gnu
R_PRINTCMD /usr/bin/lpr
R_RD4PDF times,inconsolata,hyper
R_SESSION_TMPDIR /tmp/Rtmp6ipr2B
R_SHARE_DIR /opt/R/4.4.3/lib/R/share
R_STRIP_SHARED_LIB strip --strip-unneeded
R_STRIP_STATIC_LIB strip --strip-debug
R_TEXI2DVICMD /usr/bin/texi2dvi
R_UNZIPCMD /usr/bin/unzip
R_ZIPCMD /usr/bin/zip
RUNNER_ARCH X64
RUNNER_ENVIRONMENT github-hosted
RUNNER_NAME GitHub-Actions-1000000483
RUNNER_OS Linux
RUNNER_PERFLOG /home/runner/perflog
RUNNER_TEMP /home/runner/work/_temp
RUNNER_TOOL_CACHE /opt/hostedtoolcache
RUNNER_TRACKING_ID github_935ddd69-831d-48e1-b9b2-8be6628fe0df
RUNNER_USER runner
RUNNER_WORKSPACE /home/runner/work/pharmapkgs
SED /usr/bin/sed
SELENIUM_JAR_PATH /usr/share/java/selenium-server.jar
SGX_AESM_ADDR 1
SHLVL 1
STATS_D true
STATS_D_D true
STATS_D_TC true
STATS_EXT true
STATS_EXTP https://provjobdprod.z13.web.core.windows.net/settings/provjobdsettings-latest/provjobd.data
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STATS_RDCL true
STATS_TRP true
STATS_UE true
STATS_V3PS true
STATS_VMD true
STATS_VMFE true
SWIFT_PATH /usr/share/swift/usr/bin
SYSTEMD_EXEC_PID 831
TAR /usr/bin/tar
TZ UTC
USER runner
VCPKG_INSTALLATION_ROOT
/usr/local/share/vcpkg
XDG_CONFIG_HOME /home/runner/.config
XDG_RUNTIME_DIR /run/user/1001These are the options set to generate the report:
$add.smooth
[1] TRUE
$bitmapType
[1] "cairo"
$browser
[1] "xdg-open"
$browserNLdisabled
[1] FALSE
$callr.condition_handler_cli_message
function (msg)
{
custom_handler <- getOption("cli.default_handler")
if (is.function(custom_handler)) {
custom_handler(msg)
}
else {
cli_server_default(msg)
}
}
<bytecode: 0x55d8ef469330>
<environment: namespace:cli>
$catch.script.errors
[1] FALSE
$CBoundsCheck
[1] FALSE
$check.bounds
[1] FALSE
$citation.bibtex.max
[1] 1
$continue
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$contrasts
unordered ordered
"contr.treatment" "contr.poly"
$covr.record_tests
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$defaultPackages
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$demo.ask
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$deparse.cutoff
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$device
function (width = 7, height = 7, ...)
{
grDevices::pdf(NULL, width, height, ...)
}
<bytecode: 0x55d8ee94da68>
<environment: namespace:knitr>
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$digits
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$echo
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$editor
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$encoding
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$example.ask
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$expressions
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$internet.info
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[1] FALSE
$knitr.in.progress
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$locatorBell
[1] TRUE
$mailer
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$matprod
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$max.contour.segments
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$max.print
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$na.action
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$OutDec
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$papersize
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$PCRE_limit_recursion
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$PCRE_study
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$PCRE_use_JIT
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$pdfviewer
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$pkgType
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$printcmd
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$prompt
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$repos
CRAN
"https://cran.rstudio.com"
$rl_word_breaks
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$rlang_trace_top_env
<environment: R_GlobalEnv>
$scipen
[1] 0
$show.coef.Pvalues
[1] TRUE
$show.error.messages
[1] TRUE
$show.signif.stars
[1] TRUE
$showErrorCalls
[1] TRUE
$showNCalls
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$showWarnCalls
[1] FALSE
$str
$str$strict.width
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$str$digits.d
[1] 3
$str$vec.len
[1] 4
$str$list.len
[1] 99
$str$deparse.lines
NULL
$str$drop.deparse.attr
[1] TRUE
$str$formatNum
function (x, ...)
format(x, trim = TRUE, drop0trailing = TRUE, ...)
<environment: 0x55d8ee944688>
$str.dendrogram.last
[1] "`"
$texi2dvi
[1] "/usr/bin/texi2dvi"
$tikzMetricsDictionary
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$timeout
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$try.outFile
A connection with
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class "file"
mode "w+b"
text "binary"
opened "opened"
can read "yes"
can write "yes"
$ts.eps
[1] 1e-05
$ts.S.compat
[1] FALSE
$unzip
[1] "/usr/bin/unzip"
$useFancyQuotes
[1] FALSE
$verbose
[1] FALSE
$warn
[1] 0
$warning.length
[1] 1000
$warnPartialMatchArgs
[1] FALSE
$warnPartialMatchAttr
[1] FALSE
$warnPartialMatchDollar
[1] FALSE
$width
[1] 80