Validation Report - brms@2.22.0
Context
This report is fully automated and builds on rhub/ref-image image. Documents the installation of this package on an open source R environment, focusing on:
- Installation environment description
- Testing coverage
It is limited to assess whether unit tests and documentation are present and can execute without error. An assessment would be required that the tests and documentation are meaningful.
Package brms
Metric based risk assessment
The following metrics are derived from the riskmetric R package.
| has_news | 1 |
| news_current | TRUE |
| exported_namespace | 303 |
| has_vignettes | 35 |
| export_help | 303 |
| has_website | TRUE |
| has_maintainer | Paul-Christian Bürkner paul.buerkner@gmail.com |
| bugs_status | subscript out of bounds |
| has_source_control | https://github.com/paul-buerkner/brms |
| has_bug_reports_url | 1 |
| downloads_1yr | 266191 |
| reverse_dependencies | 58 |
| has_examples | 0.983871 |
| dependencies | 25 |
| license | GPL-2 |
Package general assessment: Coverage, check results, size, download the last year, reverse dependencies and number of dependencies.
Dependencies
Overall the package has these dependencies:
| package | type | |
|---|---|---|
| 1 | Rcpp (>= 0.12.0) | Depends |
| 2 | methods | Depends |
| 3 | rstan (>= 2.29.0) | Imports |
| 4 | ggplot2 (>= 2.0.0) | Imports |
| 5 | loo (>= 2.8.0) | Imports |
| 6 | posterior (>= 1.6.0) | Imports |
| 7 | Matrix (>= 1.1.1) | Imports |
| 8 | mgcv (>= 1.8-13) | Imports |
| 9 | rstantools (>= 2.1.1) | Imports |
| 10 | bayesplot (>= 1.5.0) | Imports |
| 11 | bridgesampling (>= 0.3-0) | Imports |
| 12 | glue (>= 1.3.0) | Imports |
| 13 | rlang (>= 1.0.0) | Imports |
| 14 | future (>= 1.19.0) | Imports |
| 15 | future.apply (>= 1.0.0) | Imports |
| 16 | matrixStats | Imports |
| 17 | nleqslv | Imports |
| 18 | nlme | Imports |
| 19 | coda | Imports |
| 20 | abind | Imports |
| 21 | stats | Imports |
| 22 | utils | Imports |
| 23 | parallel | Imports |
| 24 | grDevices | Imports |
| 25 | backports | Imports |
Package dependencies
Reverse dependencies
Overall the package has 58 reverse dependencies:
afex, bayesian, bayesnec, BayesPostEst, bayestestR, bmm, bonsaiforest, brms.mmrm, brmsmargins, broom.helpers, broom.mixed, bsitar, chkptstanr, conformalbayes, datawizard, effectsize, emmeans, ESTER, exdqlm, flocker, ggeffects, IJSE, insight, INSPECTumours, lehuynh, loo, marginaleffects, modelbased, modelsummary, multilevelcoda, multilevelmediation, multimedia, mvgam, neodistr, nlmixr2extra, novelforestSG, ordbetareg, panelr, parameters, pcvr, performance, photosynthesis, pollimetry, PoolTestR, priorsense, projpred, RBesT, report, rmstBayespara, see, shinybrms, shrinkem, sjPlot, sjstats, squid, tidybayes, trending, webSDM
Namespace
Overall the package has 303 exported objects. 303 are documented:
acat acformula
TRUE TRUE
add_criterion add_ic
TRUE TRUE
add_ic<- add_loo
TRUE TRUE
add_rstan_model add_waic
TRUE TRUE
ar arma
TRUE TRUE
as_draws as_draws_array
TRUE TRUE
as_draws_df as_draws_list
TRUE TRUE
as_draws_matrix as_draws_rvars
TRUE TRUE
as.brmsprior as.mcmc
TRUE TRUE
asym_laplace autocor
TRUE TRUE
bayes_factor bayes_R2
TRUE TRUE
bernoulli Beta
TRUE TRUE
beta_binomial bf
TRUE TRUE
bridge_sampler brm
TRUE TRUE
brm_multiple brmsfamily
TRUE TRUE
brmsfit_needs_refit brmsformula
TRUE TRUE
brmsterms car
TRUE TRUE
categorical combine_models
TRUE TRUE
compare_ic conditional_effects
TRUE TRUE
conditional_smooths constant
TRUE TRUE
control_params cor_ar
TRUE TRUE
cor_arma cor_arr
TRUE TRUE
cor_bsts cor_car
TRUE TRUE
cor_cosy cor_errorsar
TRUE TRUE
cor_fixed cor_icar
TRUE TRUE
cor_lagsar cor_ma
TRUE TRUE
cor_sar cosy
TRUE TRUE
cox cratio
TRUE TRUE
cs cse
TRUE TRUE
cumulative custom_family
TRUE TRUE
dasym_laplace data_predictor
TRUE TRUE
data_response dbeta_binomial
TRUE TRUE
ddirichlet default_prior
TRUE TRUE
density_ratio dexgaussian
TRUE TRUE
dfrechet dgen_extreme_value
TRUE TRUE
dhurdle_gamma dhurdle_lognormal
TRUE TRUE
dhurdle_negbinomial dhurdle_poisson
TRUE TRUE
dinv_gaussian dirichlet
TRUE TRUE
dlogistic_normal dmulti_normal
TRUE TRUE
dmulti_student_t do_call
TRUE TRUE
dshifted_lnorm dskew_normal
TRUE TRUE
dstudent_t dvon_mises
TRUE TRUE
dwiener dzero_inflated_beta
TRUE TRUE
dzero_inflated_beta_binomial dzero_inflated_binomial
TRUE TRUE
dzero_inflated_negbinomial dzero_inflated_poisson
TRUE TRUE
empty_prior exgaussian
TRUE TRUE
exponential expose_functions
TRUE TRUE
expp1 extract_draws
TRUE TRUE
fcor fixef
TRUE TRUE
frechet gen_extreme_value
TRUE TRUE
geometric get_dpar
TRUE TRUE
get_prior get_y
TRUE TRUE
gp gr
TRUE TRUE
horseshoe hurdle_cumulative
TRUE TRUE
hurdle_gamma hurdle_lognormal
TRUE TRUE
hurdle_negbinomial hurdle_poisson
TRUE TRUE
hypothesis inv_logit_scaled
TRUE TRUE
is.brmsfit is.brmsfit_multiple
TRUE TRUE
is.brmsformula is.brmsprior
TRUE TRUE
is.brmsterms is.cor_arma
TRUE TRUE
is.cor_brms is.cor_car
TRUE TRUE
is.cor_cosy is.cor_fixed
TRUE TRUE
is.cor_sar is.mvbrmsformula
TRUE TRUE
is.mvbrmsterms kfold
TRUE TRUE
kfold_predict lasso
TRUE TRUE
lf log_lik
TRUE TRUE
log_posterior logistic_normal
TRUE TRUE
logit_scaled logm1
TRUE TRUE
lognormal loo
TRUE TRUE
LOO loo_compare
TRUE TRUE
loo_epred loo_linpred
TRUE TRUE
loo_model_weights loo_moment_match
TRUE TRUE
loo_predict loo_predictive_interval
TRUE TRUE
loo_R2 loo_subsample
TRUE TRUE
ma make_conditions
TRUE TRUE
make_stancode make_standata
TRUE TRUE
marginal_effects marginal_smooths
TRUE TRUE
mcmc_plot me
TRUE TRUE
mi mixture
TRUE TRUE
mm mmc
TRUE TRUE
mo model_weights
TRUE TRUE
multinomial mvbf
TRUE TRUE
mvbind mvbrmsformula
TRUE TRUE
nchains ndraws
TRUE TRUE
neff_ratio negbinomial
TRUE TRUE
ngrps niterations
TRUE TRUE
nlf nsamples
TRUE TRUE
nuts_params nvariables
TRUE TRUE
opencl parnames
TRUE TRUE
parse_bf pasym_laplace
TRUE TRUE
pbeta_binomial pexgaussian
TRUE TRUE
pfrechet pgen_extreme_value
TRUE TRUE
phurdle_gamma phurdle_lognormal
TRUE TRUE
phurdle_negbinomial phurdle_poisson
TRUE TRUE
pinv_gaussian post_prob
TRUE TRUE
posterior_average posterior_epred
TRUE TRUE
posterior_interval posterior_linpred
TRUE TRUE
posterior_predict posterior_samples
TRUE TRUE
posterior_smooths posterior_summary
TRUE TRUE
posterior_table pp_average
TRUE TRUE
pp_check pp_expect
TRUE TRUE
pp_mixture predictive_error
TRUE TRUE
predictive_interval prepare_predictions
TRUE TRUE
prior prior_
TRUE TRUE
prior_draws prior_samples
TRUE TRUE
prior_string prior_summary
TRUE TRUE
pshifted_lnorm psis
TRUE TRUE
pskew_normal pstudent_t
TRUE TRUE
pvon_mises pzero_inflated_beta
TRUE TRUE
pzero_inflated_beta_binomial pzero_inflated_binomial
TRUE TRUE
pzero_inflated_negbinomial pzero_inflated_poisson
TRUE TRUE
qasym_laplace qfrechet
TRUE TRUE
qgen_extreme_value qshifted_lnorm
TRUE TRUE
qskew_normal qstudent_t
TRUE TRUE
R2D2 ranef
TRUE TRUE
rasym_laplace rbeta_binomial
TRUE TRUE
rdirichlet read_csv_as_stanfit
TRUE TRUE
recompile_model reloo
TRUE TRUE
rename_pars resp_bhaz
TRUE TRUE
resp_cat resp_cens
TRUE TRUE
resp_dec resp_index
TRUE TRUE
resp_mi resp_rate
TRUE TRUE
resp_se resp_subset
TRUE TRUE
resp_thres resp_trials
TRUE TRUE
resp_trunc resp_vint
TRUE TRUE
resp_vreal resp_weights
TRUE TRUE
restructure rexgaussian
TRUE TRUE
rfrechet rgen_extreme_value
TRUE TRUE
rhat rinv_gaussian
TRUE TRUE
rlogistic_normal rmulti_normal
TRUE TRUE
rmulti_student_t rows2labels
TRUE TRUE
rshifted_lnorm rskew_normal
TRUE TRUE
rstudent_t rvon_mises
TRUE TRUE
rwiener s
TRUE TRUE
sar save_pars
TRUE TRUE
set_mecor set_nl
TRUE TRUE
set_prior set_rescor
TRUE TRUE
shifted_lognormal skew_normal
TRUE TRUE
sratio stancode
TRUE TRUE
standata stanplot
TRUE TRUE
stanvar student
TRUE TRUE
t2 theme_black
TRUE TRUE
theme_default threading
TRUE TRUE
unstr update_adterms
TRUE TRUE
validate_newdata validate_prior
TRUE TRUE
VarCorr variables
TRUE TRUE
von_mises waic
TRUE TRUE
WAIC weibull
TRUE TRUE
wiener zero_inflated_beta
TRUE TRUE
zero_inflated_beta_binomial zero_inflated_binomial
TRUE TRUE
zero_inflated_negbinomial zero_inflated_poisson
TRUE TRUE
zero_one_inflated_beta
TRUE Examples
There are 183 help pages with examples, from 186 (98.39 %).
NEWS
The package has NEWS file and it is current.
License
The package uses .
Installation environment
System Info
| Field | Value |
|---|---|
| Image | rhub/ref-image |
| OS | Ubuntu 24.04.1 LTS |
| Platform | x86_64-pc-linux-gnu |
| System | x86_64, linux-gnu |
| Execution Time | 2025-02-15 04:45:31 UTC |
System information. Table about the system used to check the package.
R Session Info
Information about the R environment and capabilities:
R version 4.4.2 (2024-10-31)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 24.04.1 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so; LAPACK version 3.12.0
locale:
[1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8
[4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8
[7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C
time zone: UTC
tzcode source: system (glibc)
attached base packages:
[1] tools stats graphics grDevices utils datasets methods
[8] base
loaded via a namespace (and not attached):
[1] riskreports_0.0.0.9003 compiler_4.4.2 fastmap_1.2.0
[4] cli_3.6.4 htmltools_0.5.8.1 yaml_2.3.10
[7] rmarkdown_2.29 knitr_1.49 jsonlite_1.8.9
[10] xfun_0.50 digest_0.6.37 rlang_1.1.5
[13] evaluate_1.0.3 Platform used:
OS.type file.sep dynlib.ext GUI endian pkgType path.sep
"unix" "/" ".so" "X11" "little" "source" ":"
r_arch
"" R’s capabilities:
jpeg png tiff tcltk X11 aqua
TRUE TRUE TRUE TRUE FALSE FALSE
http/ftp sockets libxml fifo cledit iconv
TRUE TRUE FALSE TRUE FALSE TRUE
NLS Rprof profmem cairo ICU long.double
TRUE TRUE TRUE TRUE TRUE TRUE
libcurl
TRUE External software:
zlib
"1.3"
bzlib
"1.0.8, 13-Jul-2019"
xz
"5.4.5"
libdeflate
"1.19"
PCRE
"10.42 2022-12-11"
ICU
"74.2"
TRE
"TRE 0.8.0 R_fixes (BSD)"
iconv
"glibc 2.39"
readline
"8.2"
BLAS
"/usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3" Graphics external software:
cairo cairoFT pango
"1.18.0" "" "1.52.1"
libpng jpeg libtiff
"1.6.43" "8.0" "LIBTIFF, Version 4.5.1" Numerical characteristics of the machine:
double.eps double.neg.eps double.xmin
2.220446e-16 1.110223e-16 2.225074e-308
double.xmax double.base double.digits
1.797693e+308 2.000000e+00 5.300000e+01
double.rounding double.guard double.ulp.digits
5.000000e+00 0.000000e+00 -5.200000e+01
double.neg.ulp.digits double.exponent double.min.exp
-5.300000e+01 1.100000e+01 -1.022000e+03
double.max.exp integer.max sizeof.long
1.024000e+03 2.147484e+09 8.000000e+00
sizeof.longlong sizeof.longdouble sizeof.pointer
8.000000e+00 1.600000e+01 8.000000e+00
sizeof.time_t longdouble.eps longdouble.neg.eps
8.000000e+00 1.084202e-19 5.421011e-20
longdouble.digits longdouble.rounding longdouble.guard
6.400000e+01 5.000000e+00 0.000000e+00
longdouble.ulp.digits longdouble.neg.ulp.digits longdouble.exponent
-6.300000e+01 -6.400000e+01 1.500000e+01
longdouble.min.exp longdouble.max.exp
-1.638200e+04 1.638400e+04 Random number generation process:
[1] "Mersenne-Twister" "Inversion" "Rejection" Information about the environment
Environmental and options variables affect how package checks and software in it might behave. Here is the environmental variables when running this report
_R_CHECK_SYSTEM_CLOCK_
FALSE
ACCEPT_EULA Y
ACTIONS_RUNNER_ACTION_ARCHIVE_CACHE
/opt/actionarchivecache
AGENT_TOOLSDIRECTORY /opt/hostedtoolcache
ANDROID_HOME /usr/local/lib/android/sdk
ANDROID_NDK /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_HOME /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_LATEST_HOME
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ANDROID_NDK_ROOT /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_SDK_ROOT /usr/local/lib/android/sdk
ANT_HOME /usr/share/ant
AZURE_EXTENSION_DIR /opt/az/azcliextensions
BOOTSTRAP_HASKELL_NONINTERACTIVE
1
BUNDLE_EXT linux-amd64.deb
CHROME_BIN /usr/bin/google-chrome
CHROMEWEBDRIVER /usr/local/share/chromedriver-linux64
CI true
CONDA /usr/share/miniconda
DEBIAN_FRONTEND noninteractive
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DENO_NO_UPDATE_CHECK 1
DENO_TLS_CA_STORE system,mozilla
DEPLOYMENT_BASEPATH /opt/runner
DOTNET_MULTILEVEL_LOOKUP
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DOTNET_NOLOGO 1
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EDITOR vi
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GHCUP_INSTALL_BASE_PREFIX
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GITHUB_ACTION __run
GITHUB_ACTION_REF
GITHUB_ACTION_REPOSITORY
GITHUB_ACTIONS true
GITHUB_ACTOR llrs-roche
GITHUB_ACTOR_ID 185338939
GITHUB_API_URL https://api.github.com
GITHUB_BASE_REF
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GITHUB_EVENT_NAME schedule
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GITHUB_GRAPHQL_URL https://api.github.com/graphql
GITHUB_HEAD_REF
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GITHUB_REF refs/heads/main
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GITHUB_REF_TYPE branch
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GITHUB_REPOSITORY_ID 798326913
GITHUB_REPOSITORY_OWNER
pharmaR
GITHUB_REPOSITORY_OWNER_ID
42115094
GITHUB_RETENTION_DAYS 90
GITHUB_RUN_ATTEMPT 1
GITHUB_RUN_ID 13341233413
GITHUB_RUN_NUMBER 92
GITHUB_SERVER_URL https://github.com
GITHUB_SHA 0c0fc0bc0d98c42191882830260da9dad887eea6
GITHUB_STATE /home/runner/work/_temp/_runner_file_commands/save_state_f8c509ad-0cb5-478b-b30f-5ae6b6902174
GITHUB_STEP_SUMMARY /home/runner/work/_temp/_runner_file_commands/step_summary_f8c509ad-0cb5-478b-b30f-5ae6b6902174
GITHUB_TRIGGERING_ACTOR
llrs-roche
GITHUB_WORKFLOW Update package repositories
GITHUB_WORKFLOW_REF pharmaR/pharmapkgs/.github/workflows/update-repos.yml@refs/heads/main
GITHUB_WORKFLOW_SHA 0c0fc0bc0d98c42191882830260da9dad887eea6
GITHUB_WORKSPACE /home/runner/work/pharmapkgs/pharmapkgs
GOROOT_1_21_X64 /opt/hostedtoolcache/go/1.21.13/x64
GOROOT_1_22_X64 /opt/hostedtoolcache/go/1.22.12/x64
GOROOT_1_23_X64 /opt/hostedtoolcache/go/1.23.6/x64
GRADLE_HOME /usr/share/gradle-8.12.1
HOME /home/runner
HOMEBREW_CLEANUP_PERIODIC_FULL_DAYS
3650
HOMEBREW_NO_AUTO_UPDATE
1
ImageOS ubuntu24
ImageVersion 20250209.1.0
INVOCATION_ID 5c7bed78c97148e29cb0b195c5a78088
JAVA_HOME /usr/lib/jvm/temurin-17-jdk-amd64
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JOURNAL_STREAM 8:8239
LANG C.UTF-8
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LN_S ln -s
LOGGER_LOG_LEVEL DEBUG
MAKE make
MEMORY_PRESSURE_WATCH /sys/fs/cgroup/system.slice/runner-provisioner.service/memory.pressure
MEMORY_PRESSURE_WRITE c29tZSAyMDAwMDAgMjAwMDAwMAA=
NOT_CRAN true
NVM_DIR /home/runner/.nvm
PAGER /usr/bin/pager
PATH /snap/bin:/home/runner/.local/bin:/opt/pipx_bin:/home/runner/.cargo/bin:/home/runner/.config/composer/vendor/bin:/usr/local/.ghcup/bin:/home/runner/.dotnet/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
PERFLOG_LOCATION_SETTING
RUNNER_PERFLOG
PHARMAPKGS_EXCLUDED_METRICS
assess_covr_coverage,assess_r_cmd_check
PHARMAPKGS_LIMIT 1000
PHARMAPKGS_PLATFORM ubuntu-22.04
PHARMAPKGS_R_VERSION 4.4
PHARMAPKGS_REMOTE_REPO
https://cloud.r-project.org/
PIPX_BIN_DIR /opt/pipx_bin
PIPX_HOME /opt/pipx
PKGCACHE_HTTP_VERSION 2
PKGLOAD_PARENT_TEMPDIR
/tmp/Rtmpxlc1zI
POWERSHELL_DISTRIBUTION_CHANNEL
GitHub-Actions-ubuntu24
PROCESSX_PS1ccd2113f86d_1739594726
YES
PWD /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_BIN_PATH /opt/quarto/bin
QUARTO_DENO /opt/quarto/bin/tools/x86_64/deno
QUARTO_DOCUMENT_PATH /home/runner/work/pharmapkgs/pharmapkgs/inst/report
QUARTO_PROFILE
QUARTO_PROJECT_DIR /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_PROJECT_ROOT /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_ROOT /
QUARTO_SHARE_PATH /opt/quarto/share
R_ARCH
R_BROWSER xdg-open
R_BZIPCMD /usr/bin/bzip2
R_DOC_DIR /opt/R/4.4.2/lib/R/doc
R_GZIPCMD /usr/bin/gzip
R_HOME /opt/R/4.4.2/lib/R
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R_LIB_FOR_PAK /opt/R/4.4.2/lib/R/site-library
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R_PAPERSIZE letter
R_PAPERSIZE_USER letter
R_PDFVIEWER /usr/bin/xdg-open
R_PLATFORM x86_64-pc-linux-gnu
R_PRINTCMD /usr/bin/lpr
R_RD4PDF times,inconsolata,hyper
R_SESSION_TMPDIR /tmp/RtmpYozotS
R_SHARE_DIR /opt/R/4.4.2/lib/R/share
R_STRIP_SHARED_LIB strip --strip-unneeded
R_STRIP_STATIC_LIB strip --strip-debug
R_TEXI2DVICMD /usr/bin/texi2dvi
R_UNZIPCMD /usr/bin/unzip
R_ZIPCMD /usr/bin/zip
RUNNER_ARCH X64
RUNNER_ENVIRONMENT github-hosted
RUNNER_NAME GitHub Actions 8
RUNNER_OS Linux
RUNNER_PERFLOG /home/runner/perflog
RUNNER_TEMP /home/runner/work/_temp
RUNNER_TOOL_CACHE /opt/hostedtoolcache
RUNNER_TRACKING_ID github_4fe491a9-475c-47ca-863f-ba9d90fd5980
RUNNER_USER runner
RUNNER_WORKSPACE /home/runner/work/pharmapkgs
SED /usr/bin/sed
SELENIUM_JAR_PATH /usr/share/java/selenium-server.jar
SGX_AESM_ADDR 1
SHLVL 1
STATS_D true
STATS_D_D true
STATS_D_TC true
STATS_EXT true
STATS_EXTP https://provjobdprod.z13.web.core.windows.net/settings/provjobdsettings-latest/provjobd.data
STATS_PIP false
STATS_RDCL true
STATS_TRP true
STATS_UE true
STATS_V3PS true
STATS_VMD true
STATS_VMFE true
SWIFT_PATH /usr/share/swift/usr/bin
SYSTEMD_EXEC_PID 830
TAR /usr/bin/tar
TZ UTC
USER runner
VCPKG_INSTALLATION_ROOT
/usr/local/share/vcpkg
XDG_CONFIG_HOME /home/runner/.config
XDG_RUNTIME_DIR /run/user/1001These are the options set to generate the report:
$add.smooth
[1] TRUE
$bitmapType
[1] "cairo"
$browser
[1] "xdg-open"
$browserNLdisabled
[1] FALSE
$callr.condition_handler_cli_message
function (msg)
{
custom_handler <- getOption("cli.default_handler")
if (is.function(custom_handler)) {
custom_handler(msg)
}
else {
cli_server_default(msg)
}
}
<bytecode: 0x564b582ba910>
<environment: namespace:cli>
$catch.script.errors
[1] FALSE
$CBoundsCheck
[1] FALSE
$check.bounds
[1] FALSE
$citation.bibtex.max
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$continue
[1] "+ "
$contrasts
unordered ordered
"contr.treatment" "contr.poly"
$covr.record_tests
[1] TRUE
$defaultPackages
[1] "datasets" "utils" "grDevices" "graphics" "stats" "methods"
$demo.ask
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$deparse.cutoff
[1] 60
$device
function (width = 7, height = 7, ...)
{
grDevices::pdf(NULL, width, height, ...)
}
<bytecode: 0x564b582bef20>
<environment: namespace:knitr>
$device.ask.default
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$digits
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$dvipscmd
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$echo
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$editor
[1] "vi"
$encoding
[1] "native.enc"
$example.ask
[1] "default"
$expressions
[1] 5000
$help.search.types
[1] "vignette" "demo" "help"
$help.try.all.packages
[1] FALSE
$htmltools.preserve.raw
[1] TRUE
$HTTPUserAgent
[1] "R/4.4.2 R (4.4.2 x86_64-pc-linux-gnu x86_64 linux-gnu) on GitHub Actions"
$internet.info
[1] 2
$keep.parse.data
[1] TRUE
$keep.parse.data.pkgs
[1] FALSE
$keep.source
[1] FALSE
$keep.source.pkgs
[1] FALSE
$knitr.in.progress
[1] TRUE
$locatorBell
[1] TRUE
$mailer
[1] "mailto"
$matprod
[1] "default"
$max.contour.segments
[1] 25000
$max.print
[1] 99999
$menu.graphics
[1] TRUE
$na.action
[1] "na.omit"
$Ncpus
[1] 1
$nwarnings
[1] 50
$OutDec
[1] "."
$pager
[1] "/opt/R/4.4.2/lib/R/bin/pager"
$papersize
[1] "letter"
$PCRE_limit_recursion
[1] NA
$PCRE_study
[1] FALSE
$PCRE_use_JIT
[1] TRUE
$pdfviewer
[1] "/usr/bin/xdg-open"
$pkgType
[1] "source"
$printcmd
[1] "/usr/bin/lpr"
$prompt
[1] "> "
$repos
CRAN
"https://cran.rstudio.com"
$rl_word_breaks
[1] " \t\n\"\\'`><=%;,|&{()}"
$rlang_trace_top_env
<environment: R_GlobalEnv>
$scipen
[1] 0
$show.coef.Pvalues
[1] TRUE
$show.error.messages
[1] TRUE
$show.signif.stars
[1] TRUE
$showErrorCalls
[1] TRUE
$showNCalls
[1] 50
$showWarnCalls
[1] FALSE
$str
$str$strict.width
[1] "no"
$str$digits.d
[1] 3
$str$vec.len
[1] 4
$str$list.len
[1] 99
$str$deparse.lines
NULL
$str$drop.deparse.attr
[1] TRUE
$str$formatNum
function (x, ...)
format(x, trim = TRUE, drop0trailing = TRUE, ...)
<environment: 0x564b57792520>
$str.dendrogram.last
[1] "`"
$texi2dvi
[1] "/usr/bin/texi2dvi"
$tikzMetricsDictionary
[1] "validation_report_brms_v2.22.0-tikzDictionary"
$timeout
[1] 60
$try.outFile
A connection with
description ""
class "file"
mode "w+b"
text "binary"
opened "opened"
can read "yes"
can write "yes"
$ts.eps
[1] 1e-05
$ts.S.compat
[1] FALSE
$unzip
[1] "/usr/bin/unzip"
$useFancyQuotes
[1] FALSE
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[1] FALSE
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[1] 0
$warning.length
[1] 1000
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[1] FALSE
$warnPartialMatchDollar
[1] FALSE
$width
[1] 80