Validation Report - brickster@0.2.6

Context

This report is fully automated and builds on rhub/ref-image image. Documents the installation of this package on an open source R environment, focusing on:

  • Installation environment description
  • Testing coverage

It is limited to assess whether unit tests and documentation are present and can execute without error. An assessment would be required that the tests and documentation are meaningful.

Package brickster

Metric based risk assessment

The following metrics are derived from the riskmetric R package.

has_news 1
news_current TRUE
exported_namespace 214
has_vignettes 8
export_help 214
has_website TRUE
has_maintainer Zac Davies
bugs_status package DESCRIPTION does not have a BugReports field
has_source_control https://github.com/databrickslabs/brickster
has_bug_reports_url 0
downloads_1yr 1587
reverse_dependencies 0
has_examples 0.9955556
dependencies 15
license Apache License (>= 2)

Package general assessment: Coverage, check results, size, download the last year, reverse dependencies and number of dependencies.

Dependencies

Overall the package has these dependencies:

package type
1 arrow Imports
2 base64enc Imports
3 cli Imports
4 curl Imports
5 dplyr Imports
6 glue Imports
7 httr2 Imports
8 ini Imports
9 jsonlite Imports
10 purrr Imports
11 reticulate Imports
12 R6 (>= 2.4.0) Imports
13 rlang Imports
14 tibble Imports
15 utils Imports

Package dependencies

Reverse dependencies

Overall the package has 0 reverse dependencies:

Namespace

Overall the package has 214 exported objects. 214 are documented:

              access_control_req_group                access_control_req_user 
                                  TRUE                                   TRUE 
                access_control_request                           add_lib_path 
                                  TRUE                                   TRUE 
                        aws_attributes                       azure_attributes 
                                  TRUE                                   TRUE 
                       close_workspace                      cluster_autoscale 
                                  TRUE                                   TRUE 
                      cluster_log_conf                          cron_schedule 
                                  TRUE                                   TRUE 
                   DatabricksSqlClient                      db_cluster_create 
                                  TRUE                                   TRUE 
                     db_cluster_delete                        db_cluster_edit 
                                  TRUE                                   TRUE 
                     db_cluster_events                         db_cluster_get 
                                  TRUE                                   TRUE 
                       db_cluster_list             db_cluster_list_node_types 
                                  TRUE                                   TRUE 
                 db_cluster_list_zones                 db_cluster_perm_delete 
                                  TRUE                                   TRUE 
                        db_cluster_pin                      db_cluster_resize 
                                  TRUE                                   TRUE 
                    db_cluster_restart            db_cluster_runtime_versions 
                                  TRUE                                   TRUE 
                      db_cluster_start                   db_cluster_terminate 
                                  TRUE                                   TRUE 
                      db_cluster_unpin              db_context_command_cancel 
                                  TRUE                                   TRUE 
                db_context_command_run        db_context_command_run_and_wait 
                                  TRUE                                   TRUE 
             db_context_command_status                      db_context_create 
                                  TRUE                                   TRUE 
                    db_context_destroy                     db_context_manager 
                                  TRUE                                   TRUE 
                     db_context_status                       db_current_cloud 
                                  TRUE                                   TRUE 
                       db_current_user                db_current_workspace_id 
                                  TRUE                                   TRUE 
                     db_dbfs_add_block                          db_dbfs_close 
                                  TRUE                                   TRUE 
                        db_dbfs_create                         db_dbfs_delete 
                                  TRUE                                   TRUE 
                    db_dbfs_get_status                           db_dbfs_list 
                                  TRUE                                   TRUE 
                        db_dbfs_mkdirs                           db_dbfs_move 
                                  TRUE                                   TRUE 
                           db_dbfs_put                           db_dbfs_read 
                                  TRUE                                   TRUE 
                               db_host                         db_jobs_create 
                                  TRUE                                   TRUE 
                        db_jobs_delete                            db_jobs_get 
                                  TRUE                                   TRUE 
                          db_jobs_list                          db_jobs_reset 
                                  TRUE                                   TRUE 
                       db_jobs_run_now                    db_jobs_runs_cancel 
                                  TRUE                                   TRUE 
                   db_jobs_runs_delete                    db_jobs_runs_export 
                                  TRUE                                   TRUE 
                      db_jobs_runs_get                db_jobs_runs_get_output 
                                  TRUE                                   TRUE 
                     db_jobs_runs_list                    db_jobs_runs_submit 
                                  TRUE                                   TRUE 
                        db_jobs_update           db_libs_all_cluster_statuses 
                                  TRUE                                   TRUE 
                db_libs_cluster_status                        db_libs_install 
                                  TRUE                                   TRUE 
                     db_libs_uninstall db_mlflow_model_approve_transition_req 
                                  TRUE                                   TRUE 
 db_mlflow_model_delete_transition_req   db_mlflow_model_open_transition_reqs 
                                  TRUE                                   TRUE 
 db_mlflow_model_reject_transition_req         db_mlflow_model_transition_req 
                                  TRUE                                   TRUE 
      db_mlflow_model_transition_stage        db_mlflow_model_version_comment 
                                  TRUE                                   TRUE 
db_mlflow_model_version_comment_delete   db_mlflow_model_version_comment_edit 
                                  TRUE                                   TRUE 
    db_mlflow_registered_model_details                          db_read_netrc 
                                  TRUE                                   TRUE 
                               db_repl                         db_repo_create 
                                  TRUE                                   TRUE 
                        db_repo_delete                            db_repo_get 
                                  TRUE                                   TRUE 
                       db_repo_get_all                         db_repo_update 
                                  TRUE                                   TRUE 
                       db_request_json                      db_secrets_delete 
                                  TRUE                                   TRUE 
                       db_secrets_list                         db_secrets_put 
                                  TRUE                                   TRUE 
           db_secrets_scope_acl_delete               db_secrets_scope_acl_get 
                                  TRUE                                   TRUE 
             db_secrets_scope_acl_list               db_secrets_scope_acl_put 
                                  TRUE                                   TRUE 
               db_secrets_scope_create                db_secrets_scope_delete 
                                  TRUE                                   TRUE 
             db_secrets_scope_list_all                          db_sql_client 
                                  TRUE                                   TRUE 
                    db_sql_exec_cancel                      db_sql_exec_query 
                                  TRUE                                   TRUE 
                    db_sql_exec_result                     db_sql_exec_status 
                                  TRUE                                   TRUE 
           db_sql_global_warehouse_get                   db_sql_query_history 
                                  TRUE                                   TRUE 
               db_sql_warehouse_create                db_sql_warehouse_delete 
                                  TRUE                                   TRUE 
                 db_sql_warehouse_edit                   db_sql_warehouse_get 
                                  TRUE                                   TRUE 
                 db_sql_warehouse_list                 db_sql_warehouse_start 
                                  TRUE                                   TRUE 
                 db_sql_warehouse_stop                               db_token 
                                  TRUE                                   TRUE 
                      db_volume_delete                   db_volume_dir_create 
                                  TRUE                                   TRUE 
                  db_volume_dir_delete                   db_volume_dir_exists 
                                  TRUE                                   TRUE 
                 db_volume_file_exists                         db_volume_list 
                                  TRUE                                   TRUE 
                        db_volume_read                        db_volume_write 
                                  TRUE                                   TRUE 
                db_vs_endpoints_create                 db_vs_endpoints_delete 
                                  TRUE                                   TRUE 
                   db_vs_endpoints_get                   db_vs_endpoints_list 
                                  TRUE                                   TRUE 
                  db_vs_indexes_create                   db_vs_indexes_delete 
                                  TRUE                                   TRUE 
             db_vs_indexes_delete_data                      db_vs_indexes_get 
                                  TRUE                                   TRUE 
                    db_vs_indexes_list                    db_vs_indexes_query 
                                  TRUE                                   TRUE 
         db_vs_indexes_query_next_page                     db_vs_indexes_scan 
                                  TRUE                                   TRUE 
                    db_vs_indexes_sync              db_vs_indexes_upsert_data 
                                  TRUE                                   TRUE 
                   db_workspace_delete                    db_workspace_export 
                                  TRUE                                   TRUE 
               db_workspace_get_status                    db_workspace_import 
                                  TRUE                                   TRUE 
                     db_workspace_list                    db_workspace_mkdirs 
                                  TRUE                                   TRUE 
                               db_wsid                      dbfs_storage_info 
                                  TRUE                                   TRUE 
                 delta_sync_index_spec               direct_access_index_spec 
                                  TRUE                                   TRUE 
                          docker_image                    email_notifications 
                                  TRUE                                   TRUE 
               embedding_source_column                embedding_vector_column 
                                  TRUE                                   TRUE 
                     file_storage_info                         gcp_attributes 
                                  TRUE                                   TRUE 
                 get_and_start_cluster                get_and_start_warehouse 
                                  TRUE                                   TRUE 
                        get_latest_dbr                             git_source 
                                  TRUE                                   TRUE 
                      in_databricks_nb                       init_script_info 
                                  TRUE                                   TRUE 
              install_db_sql_connector            is.access_control_req_group 
                                  TRUE                                   TRUE 
            is.access_control_req_user              is.access_control_request 
                                  TRUE                                   TRUE 
                     is.aws_attributes                    is.azure_attributes 
                                  TRUE                                   TRUE 
                  is.cluster_autoscale                    is.cluster_log_conf 
                                  TRUE                                   TRUE 
                      is.cron_schedule                   is.dbfs_storage_info 
                                  TRUE                                   TRUE 
                   is.delta_sync_index                 is.direct_access_index 
                                  TRUE                                   TRUE 
                       is.docker_image                 is.email_notifications 
                                  TRUE                                   TRUE 
            is.embedding_source_column             is.embedding_vector_column 
                                  TRUE                                   TRUE 
                  is.file_storage_info                      is.gcp_attributes 
                                  TRUE                                   TRUE 
                         is.git_source                    is.init_script_info 
                                  TRUE                                   TRUE 
                           is.job_task                            is.lib_cran 
                                  TRUE                                   TRUE 
                            is.lib_egg                             is.lib_jar 
                                  TRUE                                   TRUE 
                          is.lib_maven                            is.lib_pypi 
                                  TRUE                                   TRUE 
                            is.lib_whl                           is.libraries 
                                  TRUE                                   TRUE 
                            is.library                         is.new_cluster 
                                  TRUE                                   TRUE 
                      is.notebook_task                       is.pipeline_task 
                                  TRUE                                   TRUE 
                  is.python_wheel_task                     is.s3_storage_info 
                                  TRUE                                   TRUE 
                     is.spark_jar_task                   is.spark_python_task 
                                  TRUE                                   TRUE 
                  is.spark_submit_task                     is.valid_task_type 
                                  TRUE                                   TRUE 
           is.vector_search_index_spec                               job_task 
                                  TRUE                                   TRUE 
                             job_tasks                               lib_cran 
                                  TRUE                                   TRUE 
                               lib_egg                                lib_jar 
                                  TRUE                                   TRUE 
                             lib_maven                               lib_pypi 
                                  TRUE                                   TRUE 
                               lib_whl                              libraries 
                                  TRUE                                   TRUE 
                           new_cluster                          notebook_task 
                                  TRUE                                   TRUE 
                        open_workspace                          pipeline_task 
                                  TRUE                                   TRUE 
                   py_db_sql_connector                      python_wheel_task 
                                  TRUE                                   TRUE 
                       remove_lib_path                        s3_storage_info 
                                  TRUE                                   TRUE 
                        spark_jar_task                      spark_python_task 
                                  TRUE                                   TRUE 
                     spark_submit_task                  wait_for_lib_installs 
                                  TRUE                                   TRUE 

Examples

There are 224 help pages with examples, from 225 (99.56 %).

NEWS

The package has NEWS file and it is current.

License

The package uses .

Installation environment

System Info

Field Value
Image rhub/ref-image
OS Ubuntu 24.04.1 LTS
Platform x86_64-pc-linux-gnu
System x86_64, linux-gnu
Execution Time 2025-02-15 04:43:54 UTC

System information. Table about the system used to check the package.

R Session Info

Information about the R environment and capabilities:

R version 4.4.2 (2024-10-31)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 24.04.1 LTS

Matrix products: default
BLAS:   /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so;  LAPACK version 3.12.0

locale:
 [1] LC_CTYPE=C.UTF-8       LC_NUMERIC=C           LC_TIME=C.UTF-8       
 [4] LC_COLLATE=C.UTF-8     LC_MONETARY=C.UTF-8    LC_MESSAGES=C.UTF-8   
 [7] LC_PAPER=C.UTF-8       LC_NAME=C              LC_ADDRESS=C          
[10] LC_TELEPHONE=C         LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C   

time zone: UTC
tzcode source: system (glibc)

attached base packages:
[1] tools     stats     graphics  grDevices utils     datasets  methods  
[8] base     

loaded via a namespace (and not attached):
 [1] riskreports_0.0.0.9003 compiler_4.4.2         fastmap_1.2.0         
 [4] cli_3.6.4              htmltools_0.5.8.1      yaml_2.3.10           
 [7] rmarkdown_2.29         knitr_1.49             jsonlite_1.8.9        
[10] xfun_0.50              digest_0.6.37          rlang_1.1.5           
[13] evaluate_1.0.3        

Platform used:

   OS.type   file.sep dynlib.ext        GUI     endian    pkgType   path.sep 
    "unix"        "/"      ".so"      "X11"   "little"   "source"        ":" 
    r_arch 
        "" 

R’s capabilities:

       jpeg         png        tiff       tcltk         X11        aqua 
       TRUE        TRUE        TRUE        TRUE       FALSE       FALSE 
   http/ftp     sockets      libxml        fifo      cledit       iconv 
       TRUE        TRUE       FALSE        TRUE       FALSE        TRUE 
        NLS       Rprof     profmem       cairo         ICU long.double 
       TRUE        TRUE        TRUE        TRUE        TRUE        TRUE 
    libcurl 
       TRUE 

External software:

                                                     zlib 
                                                    "1.3" 
                                                    bzlib 
                                     "1.0.8, 13-Jul-2019" 
                                                       xz 
                                                  "5.4.5" 
                                               libdeflate 
                                                   "1.19" 
                                                     PCRE 
                                       "10.42 2022-12-11" 
                                                      ICU 
                                                   "74.2" 
                                                      TRE 
                                "TRE 0.8.0 R_fixes (BSD)" 
                                                    iconv 
                                             "glibc 2.39" 
                                                 readline 
                                                    "8.2" 
                                                     BLAS 
"/usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3" 

Graphics external software:

                   cairo                  cairoFT                    pango 
                "1.18.0"                       ""                 "1.52.1" 
                  libpng                     jpeg                  libtiff 
                "1.6.43"                    "8.0" "LIBTIFF, Version 4.5.1" 

Numerical characteristics of the machine:

               double.eps            double.neg.eps               double.xmin 
             2.220446e-16              1.110223e-16             2.225074e-308 
              double.xmax               double.base             double.digits 
            1.797693e+308              2.000000e+00              5.300000e+01 
          double.rounding              double.guard         double.ulp.digits 
             5.000000e+00              0.000000e+00             -5.200000e+01 
    double.neg.ulp.digits           double.exponent            double.min.exp 
            -5.300000e+01              1.100000e+01             -1.022000e+03 
           double.max.exp               integer.max               sizeof.long 
             1.024000e+03              2.147484e+09              8.000000e+00 
          sizeof.longlong         sizeof.longdouble            sizeof.pointer 
             8.000000e+00              1.600000e+01              8.000000e+00 
            sizeof.time_t            longdouble.eps        longdouble.neg.eps 
             8.000000e+00              1.084202e-19              5.421011e-20 
        longdouble.digits       longdouble.rounding          longdouble.guard 
             6.400000e+01              5.000000e+00              0.000000e+00 
    longdouble.ulp.digits longdouble.neg.ulp.digits       longdouble.exponent 
            -6.300000e+01             -6.400000e+01              1.500000e+01 
       longdouble.min.exp        longdouble.max.exp 
            -1.638200e+04              1.638400e+04 

Random number generation process:

[1] "Mersenne-Twister" "Inversion"        "Rejection"       

Information about the environment

Environmental and options variables affect how package checks and software in it might behave. Here is the environmental variables when running this report

_R_CHECK_SYSTEM_CLOCK_
                        FALSE
ACCEPT_EULA             Y
ACTIONS_RUNNER_ACTION_ARCHIVE_CACHE
                        /opt/actionarchivecache
AGENT_TOOLSDIRECTORY    /opt/hostedtoolcache
ANDROID_HOME            /usr/local/lib/android/sdk
ANDROID_NDK             /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_HOME        /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_LATEST_HOME
                        /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_ROOT        /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_SDK_ROOT        /usr/local/lib/android/sdk
ANT_HOME                /usr/share/ant
AZURE_EXTENSION_DIR     /opt/az/azcliextensions
BOOTSTRAP_HASKELL_NONINTERACTIVE
                        1
BUNDLE_EXT              linux-amd64.deb
CHROME_BIN              /usr/bin/google-chrome
CHROMEWEBDRIVER         /usr/local/share/chromedriver-linux64
CI                      true
CONDA                   /usr/share/miniconda
DEBIAN_FRONTEND         noninteractive
DENO_DOM_PLUGIN         /opt/quarto/bin/tools/x86_64/deno_dom/libplugin.so
DENO_NO_UPDATE_CHECK    1
DENO_TLS_CA_STORE       system,mozilla
DEPLOYMENT_BASEPATH     /opt/runner
DOTNET_MULTILEVEL_LOOKUP
                        0
DOTNET_NOLOGO           1
DOTNET_SKIP_FIRST_TIME_EXPERIENCE
                        1
EDGEWEBDRIVER           /usr/local/share/edge_driver
EDITOR                  vi
GECKOWEBDRIVER          /usr/local/share/gecko_driver
GHCUP_INSTALL_BASE_PREFIX
                        /usr/local
GITHUB_ACTION           __run
GITHUB_ACTION_REF       
GITHUB_ACTION_REPOSITORY
                        
GITHUB_ACTIONS          true
GITHUB_ACTOR            llrs-roche
GITHUB_ACTOR_ID         185338939
GITHUB_API_URL          https://api.github.com
GITHUB_BASE_REF         
GITHUB_ENV              /home/runner/work/_temp/_runner_file_commands/set_env_f8c509ad-0cb5-478b-b30f-5ae6b6902174
GITHUB_EVENT_NAME       schedule
GITHUB_EVENT_PATH       /home/runner/work/_temp/_github_workflow/event.json
GITHUB_GRAPHQL_URL      https://api.github.com/graphql
GITHUB_HEAD_REF         
GITHUB_JOB              main
GITHUB_OUTPUT           /home/runner/work/_temp/_runner_file_commands/set_output_f8c509ad-0cb5-478b-b30f-5ae6b6902174
GITHUB_PATH             /home/runner/work/_temp/_runner_file_commands/add_path_f8c509ad-0cb5-478b-b30f-5ae6b6902174
GITHUB_REF              refs/heads/main
GITHUB_REF_NAME         main
GITHUB_REF_PROTECTED    false
GITHUB_REF_TYPE         branch
GITHUB_REPOSITORY       pharmaR/pharmapkgs
GITHUB_REPOSITORY_ID    798326913
GITHUB_REPOSITORY_OWNER
                        pharmaR
GITHUB_REPOSITORY_OWNER_ID
                        42115094
GITHUB_RETENTION_DAYS   90
GITHUB_RUN_ATTEMPT      1
GITHUB_RUN_ID           13341233413
GITHUB_RUN_NUMBER       92
GITHUB_SERVER_URL       https://github.com
GITHUB_SHA              0c0fc0bc0d98c42191882830260da9dad887eea6
GITHUB_STATE            /home/runner/work/_temp/_runner_file_commands/save_state_f8c509ad-0cb5-478b-b30f-5ae6b6902174
GITHUB_STEP_SUMMARY     /home/runner/work/_temp/_runner_file_commands/step_summary_f8c509ad-0cb5-478b-b30f-5ae6b6902174
GITHUB_TRIGGERING_ACTOR
                        llrs-roche
GITHUB_WORKFLOW         Update package repositories
GITHUB_WORKFLOW_REF     pharmaR/pharmapkgs/.github/workflows/update-repos.yml@refs/heads/main
GITHUB_WORKFLOW_SHA     0c0fc0bc0d98c42191882830260da9dad887eea6
GITHUB_WORKSPACE        /home/runner/work/pharmapkgs/pharmapkgs
GOROOT_1_21_X64         /opt/hostedtoolcache/go/1.21.13/x64
GOROOT_1_22_X64         /opt/hostedtoolcache/go/1.22.12/x64
GOROOT_1_23_X64         /opt/hostedtoolcache/go/1.23.6/x64
GRADLE_HOME             /usr/share/gradle-8.12.1
HOME                    /home/runner
HOMEBREW_CLEANUP_PERIODIC_FULL_DAYS
                        3650
HOMEBREW_NO_AUTO_UPDATE
                        1
ImageOS                 ubuntu24
ImageVersion            20250209.1.0
INVOCATION_ID           5c7bed78c97148e29cb0b195c5a78088
JAVA_HOME               /usr/lib/jvm/temurin-17-jdk-amd64
JAVA_HOME_11_X64        /usr/lib/jvm/temurin-11-jdk-amd64
JAVA_HOME_17_X64        /usr/lib/jvm/temurin-17-jdk-amd64
JAVA_HOME_21_X64        /usr/lib/jvm/temurin-21-jdk-amd64
JAVA_HOME_8_X64         /usr/lib/jvm/temurin-8-jdk-amd64
JOURNAL_STREAM          8:8239
LANG                    C.UTF-8
LD_LIBRARY_PATH         /opt/R/4.4.2/lib/R/lib:/usr/local/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/temurin-17-jdk-amd64/lib/server:/opt/R/4.4.2/lib/R/lib:/usr/local/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/temurin-17-jdk-amd64/lib/server
LN_S                    ln -s
LOGGER_LOG_LEVEL        DEBUG
MAKE                    make
MEMORY_PRESSURE_WATCH   /sys/fs/cgroup/system.slice/runner-provisioner.service/memory.pressure
MEMORY_PRESSURE_WRITE   c29tZSAyMDAwMDAgMjAwMDAwMAA=
NOT_CRAN                true
NVM_DIR                 /home/runner/.nvm
PAGER                   /usr/bin/pager
PATH                    /snap/bin:/home/runner/.local/bin:/opt/pipx_bin:/home/runner/.cargo/bin:/home/runner/.config/composer/vendor/bin:/usr/local/.ghcup/bin:/home/runner/.dotnet/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
PERFLOG_LOCATION_SETTING
                        RUNNER_PERFLOG
PHARMAPKGS_EXCLUDED_METRICS
                        assess_covr_coverage,assess_r_cmd_check
PHARMAPKGS_LIMIT        1000
PHARMAPKGS_PLATFORM     ubuntu-22.04
PHARMAPKGS_R_VERSION    4.4
PHARMAPKGS_REMOTE_REPO
                        https://cloud.r-project.org/
PIPX_BIN_DIR            /opt/pipx_bin
PIPX_HOME               /opt/pipx
PKGCACHE_HTTP_VERSION   2
PKGLOAD_PARENT_TEMPDIR
                        /tmp/Rtmpxlc1zI
POWERSHELL_DISTRIBUTION_CHANNEL
                        GitHub-Actions-ubuntu24
PROCESSX_PS1ccd5af4d1e0_1739594629
                        YES
PWD                     /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_BIN_PATH         /opt/quarto/bin
QUARTO_DENO             /opt/quarto/bin/tools/x86_64/deno
QUARTO_DOCUMENT_PATH    /home/runner/work/pharmapkgs/pharmapkgs/inst/report
QUARTO_PROFILE          
QUARTO_PROJECT_DIR      /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_PROJECT_ROOT     /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_ROOT             /
QUARTO_SHARE_PATH       /opt/quarto/share
R_ARCH                  
R_BROWSER               xdg-open
R_BZIPCMD               /usr/bin/bzip2
R_DOC_DIR               /opt/R/4.4.2/lib/R/doc
R_GZIPCMD               /usr/bin/gzip
R_HOME                  /opt/R/4.4.2/lib/R
R_INCLUDE_DIR           /opt/R/4.4.2/lib/R/include
R_LIB_FOR_PAK           /opt/R/4.4.2/lib/R/site-library
R_LIBS_SITE             /opt/R/4.4.2/lib/R/site-library
R_LIBS_USER             /home/runner/work/_temp/Library
R_PAPERSIZE             letter
R_PAPERSIZE_USER        letter
R_PDFVIEWER             /usr/bin/xdg-open
R_PLATFORM              x86_64-pc-linux-gnu
R_PRINTCMD              /usr/bin/lpr
R_RD4PDF                times,inconsolata,hyper
R_SESSION_TMPDIR        /tmp/Rtmp5yrHwQ
R_SHARE_DIR             /opt/R/4.4.2/lib/R/share
R_STRIP_SHARED_LIB      strip --strip-unneeded
R_STRIP_STATIC_LIB      strip --strip-debug
R_TEXI2DVICMD           /usr/bin/texi2dvi
R_UNZIPCMD              /usr/bin/unzip
R_ZIPCMD                /usr/bin/zip
RUNNER_ARCH             X64
RUNNER_ENVIRONMENT      github-hosted
RUNNER_NAME             GitHub Actions 8
RUNNER_OS               Linux
RUNNER_PERFLOG          /home/runner/perflog
RUNNER_TEMP             /home/runner/work/_temp
RUNNER_TOOL_CACHE       /opt/hostedtoolcache
RUNNER_TRACKING_ID      github_4fe491a9-475c-47ca-863f-ba9d90fd5980
RUNNER_USER             runner
RUNNER_WORKSPACE        /home/runner/work/pharmapkgs
SED                     /usr/bin/sed
SELENIUM_JAR_PATH       /usr/share/java/selenium-server.jar
SGX_AESM_ADDR           1
SHLVL                   1
STATS_D                 true
STATS_D_D               true
STATS_D_TC              true
STATS_EXT               true
STATS_EXTP              https://provjobdprod.z13.web.core.windows.net/settings/provjobdsettings-latest/provjobd.data
STATS_PIP               false
STATS_RDCL              true
STATS_TRP               true
STATS_UE                true
STATS_V3PS              true
STATS_VMD               true
STATS_VMFE              true
SWIFT_PATH              /usr/share/swift/usr/bin
SYSTEMD_EXEC_PID        830
TAR                     /usr/bin/tar
TZ                      UTC
USER                    runner
VCPKG_INSTALLATION_ROOT
                        /usr/local/share/vcpkg
XDG_CONFIG_HOME         /home/runner/.config
XDG_RUNTIME_DIR         /run/user/1001

These are the options set to generate the report:

$add.smooth
[1] TRUE

$bitmapType
[1] "cairo"

$browser
[1] "xdg-open"

$browserNLdisabled
[1] FALSE

$callr.condition_handler_cli_message
function (msg) 
{
    custom_handler <- getOption("cli.default_handler")
    if (is.function(custom_handler)) {
        custom_handler(msg)
    }
    else {
        cli_server_default(msg)
    }
}
<bytecode: 0x558f1d83d910>
<environment: namespace:cli>

$catch.script.errors
[1] FALSE

$CBoundsCheck
[1] FALSE

$check.bounds
[1] FALSE

$citation.bibtex.max
[1] 1

$continue
[1] "+ "

$contrasts
        unordered           ordered 
"contr.treatment"      "contr.poly" 

$covr.record_tests
[1] TRUE

$defaultPackages
[1] "datasets"  "utils"     "grDevices" "graphics"  "stats"     "methods"  

$demo.ask
[1] "default"

$deparse.cutoff
[1] 60

$device
function (width = 7, height = 7, ...) 
{
    grDevices::pdf(NULL, width, height, ...)
}
<bytecode: 0x558f1d841120>
<environment: namespace:knitr>

$device.ask.default
[1] FALSE

$digits
[1] 7

$dvipscmd
[1] "dvips"

$echo
[1] FALSE

$editor
[1] "vi"

$encoding
[1] "native.enc"

$example.ask
[1] "default"

$expressions
[1] 5000

$help.search.types
[1] "vignette" "demo"     "help"    

$help.try.all.packages
[1] FALSE

$htmltools.preserve.raw
[1] TRUE

$HTTPUserAgent
[1] "R/4.4.2 R (4.4.2 x86_64-pc-linux-gnu x86_64 linux-gnu) on GitHub Actions"

$internet.info
[1] 2

$keep.parse.data
[1] TRUE

$keep.parse.data.pkgs
[1] FALSE

$keep.source
[1] FALSE

$keep.source.pkgs
[1] FALSE

$knitr.in.progress
[1] TRUE

$locatorBell
[1] TRUE

$mailer
[1] "mailto"

$matprod
[1] "default"

$max.contour.segments
[1] 25000

$max.print
[1] 99999

$menu.graphics
[1] TRUE

$na.action
[1] "na.omit"

$Ncpus
[1] 1

$nwarnings
[1] 50

$OutDec
[1] "."

$pager
[1] "/opt/R/4.4.2/lib/R/bin/pager"

$papersize
[1] "letter"

$PCRE_limit_recursion
[1] NA

$PCRE_study
[1] FALSE

$PCRE_use_JIT
[1] TRUE

$pdfviewer
[1] "/usr/bin/xdg-open"

$pkgType
[1] "source"

$printcmd
[1] "/usr/bin/lpr"

$prompt
[1] "> "

$repos
                      CRAN 
"https://cran.rstudio.com" 

$rl_word_breaks
[1] " \t\n\"\\'`><=%;,|&{()}"

$rlang_trace_top_env
<environment: R_GlobalEnv>

$scipen
[1] 0

$show.coef.Pvalues
[1] TRUE

$show.error.messages
[1] TRUE

$show.signif.stars
[1] TRUE

$showErrorCalls
[1] TRUE

$showNCalls
[1] 50

$showWarnCalls
[1] FALSE

$str
$str$strict.width
[1] "no"

$str$digits.d
[1] 3

$str$vec.len
[1] 4

$str$list.len
[1] 99

$str$deparse.lines
NULL

$str$drop.deparse.attr
[1] TRUE

$str$formatNum
function (x, ...) 
format(x, trim = TRUE, drop0trailing = TRUE, ...)
<environment: 0x558f1cd15520>


$str.dendrogram.last
[1] "`"

$texi2dvi
[1] "/usr/bin/texi2dvi"

$tikzMetricsDictionary
[1] "validation_report_brickster_v0.2.6-tikzDictionary"

$timeout
[1] 60

$try.outFile
A connection with                    
description ""      
class       "file"  
mode        "w+b"   
text        "binary"
opened      "opened"
can read    "yes"   
can write   "yes"   

$ts.eps
[1] 1e-05

$ts.S.compat
[1] FALSE

$unzip
[1] "/usr/bin/unzip"

$useFancyQuotes
[1] FALSE

$verbose
[1] FALSE

$warn
[1] 0

$warning.length
[1] 1000

$warnPartialMatchArgs
[1] FALSE

$warnPartialMatchAttr
[1] FALSE

$warnPartialMatchDollar
[1] FALSE

$width
[1] 80