Validation Report - aqp@2.2
Context
This report is fully automated and builds on rhub/ref-image image. Documents the installation of this package on an open source R environment, focusing on:
- Installation environment description
- Testing coverage
It is limited to assess whether unit tests and documentation are present and can execute without error. An assessment would be required that the tests and documentation are meaningful.
Package aqp
Metric based risk assessment
The following metrics are derived from the riskmetric R package.
| has_news | 1 |
| news_current | TRUE |
| exported_namespace | 165 |
| has_vignettes | 14 |
| export_help | 241 |
| has_website | TRUE |
| has_maintainer | Dylan Beaudette dylan.beaudette@usda.gov |
| bugs_status | 0.8 |
| has_source_control | https://github.com/ncss-tech/aqp |
| has_bug_reports_url | 1 |
| downloads_1yr | 26530 |
| reverse_dependencies | 2 |
| has_examples | 1 |
| dependencies | 14 |
| license | GPL (>= 3) |
Package general assessment: Coverage, check results, size, download the last year, reverse dependencies and number of dependencies.
Dependencies
Overall the package has these dependencies:
| package | type | |
|---|---|---|
| 1 | grDevices | Imports |
| 2 | graphics | Imports |
| 3 | stats | Imports |
| 4 | utils | Imports |
| 5 | methods | Imports |
| 6 | grid | Imports |
| 7 | lattice | Imports |
| 8 | cluster | Imports |
| 9 | stringr | Imports |
| 10 | data.table | Imports |
| 11 | farver | Imports |
| 12 | digest | Imports |
| 13 | colorspace | Imports |
| 14 | ape | Imports |
Package dependencies
Reverse dependencies
Overall the package has 2 reverse dependencies:
soilassessment, soilDB
Namespace
Overall the package has 165 exported objects. 236 are documented:
accumulateDepths addBracket
TRUE TRUE
addDiagnosticBracket addVolumeFraction
TRUE TRUE
aggregateColor aggregateColorPlot
TRUE TRUE
aggregateSoilDepth alignTransect
TRUE TRUE
allocate aqp.env
TRUE TRUE
argillic.clay.increase.depth barron.torrent.redness.LAB
TRUE TRUE
bootstrapSoilTexture brierScore
TRUE TRUE
buntley.westin.index checkHzDepthLogic
TRUE TRUE
checkSPC col2Munsell
TRUE TRUE
collapseHz colorChart
TRUE TRUE
colorContrast colorContrastPlot
TRUE TRUE
colorQuantiles compareSites
TRUE TRUE
compositeSPC confusionIndex
TRUE TRUE
contrastChart contrastClass
TRUE TRUE
correctAWC crit.clay.argillic
TRUE TRUE
denormalize depthOf
TRUE TRUE
depthWeights dissolve_hz
TRUE TRUE
duplicate electroStatics_1D
TRUE TRUE
equivalentMunsellChips estimateAWC
TRUE TRUE
estimatePSCS estimateSoilColor
TRUE TRUE
estimateSoilDepth evalGenHZ
TRUE TRUE
evalMissingData explainPlotSPC
TRUE TRUE
fillHzGaps findOverlap
TRUE TRUE
fixOverlap flagOverlappingHz
TRUE TRUE
fragmentClasses fragmentSieve
TRUE TRUE
fragvol_to_texmod generalize.hz
TRUE TRUE
genhzTableToAdjMat genSlabLabels
TRUE TRUE
get.increase.depths get.increase.matrix
TRUE TRUE
get.ml.hz get.slice
TRUE TRUE
getArgillicBounds getCambicBounds
TRUE TRUE
getClosestMunsellChip getLastHorizonID
TRUE TRUE
getMineralSoilSurfaceDepth getPlowLayerDepth
TRUE TRUE
getSoilDepthClass getSurfaceHorizonDepth
TRUE TRUE
glom glomApply
TRUE TRUE
grepSPC groupedProfilePlot
TRUE TRUE
groupSPC guessGenHzLevels
TRUE TRUE
guessHzAttrName guessHzDesgnName
TRUE TRUE
guessHzTexClName harden.melanization
TRUE TRUE
harden.rubification hasDarkColors
TRUE TRUE
horizonColorIndices huePosition
TRUE TRUE
huePositionCircle hurst.redness
TRUE TRUE
hz_dissolve hz_intersect
TRUE TRUE
hz_lag hz_segment
TRUE TRUE
hz_to_taxpartsize hzAbove
TRUE TRUE
hzBelow HzDepthLogicSubset
TRUE TRUE
hzDepthTests hzDistinctnessCodeToOffset
TRUE TRUE
hzOffset hzTopographyCodeToLineType
TRUE TRUE
hzTopographyCodeToOffset hzTransitionProbabilities
TRUE TRUE
invertLabelColor L1_profiles
TRUE TRUE
lookup_taxpartsize lunique
TRUE TRUE
maxDepthOf minDepthOf
TRUE TRUE
missingDataGrid mixMunsell
TRUE TRUE
mollic.thickness.requirement mostLikelyHzSequence
TRUE TRUE
munsell2rgb mutate_profile
TRUE TRUE
mutate_profile_raw NCSP
TRUE TRUE
overlapMetrics panel.depth_function
TRUE TRUE
parseMunsell pbindlist
TRUE TRUE
perturb ph_to_rxnclass
TRUE TRUE
plot_distance_graph plotColorMixture
TRUE TRUE
plotColorQuantiles plotMultipleSPC
TRUE TRUE
plotProfileDendrogram plotSPC
TRUE TRUE
prepanel.depth_function previewColors
TRUE TRUE
profileGroupLabels profileInformationIndex
TRUE TRUE
quickSPC random_profile
TRUE TRUE
ReactionClassLevels rebuildSPC
TRUE TRUE
reduceSPC repairMissingHzDepths
TRUE TRUE
rgb2munsell rxnclass_to_ph
TRUE TRUE
SANN_1D segment
TRUE TRUE
shannonEntropy sim
TRUE TRUE
simulateColor slab_function
TRUE TRUE
slice.fast slicedHSD
TRUE TRUE
soilColorSignature soilPalette
TRUE TRUE
SoilProfileCollection soilTextureColorPal
TRUE TRUE
SoilTextureLevels spc_in_sync
TRUE TRUE
spec2Munsell splitLogicErrors
TRUE TRUE
ssc_to_texcl subApply
TRUE TRUE
summarizeSPC summaryTauW
TRUE TRUE
tauW texcl_to_ssc
TRUE TRUE
texmod_to_fragvoltot texture_to_taxpartsize
TRUE TRUE
texture_to_texmod textureTriangleSummary
TRUE TRUE
thicknessOf thompson.bell.darkness
TRUE TRUE
unroll warpHorizons
TRUE TRUE
xtableTauW
TRUE Examples
There are 215 help pages with examples, from 215 (100.00 %).
NEWS
The package has NEWS file and it is current.
License
The package uses .
Installation environment
System Info
| Field | Value |
|---|---|
| Image | rhub/ref-image |
| OS | Ubuntu 24.04.1 LTS |
| Platform | x86_64-pc-linux-gnu |
| System | x86_64, linux-gnu |
| Execution Time | 2025-02-16 03:31:30 UTC |
System information. Table about the system used to check the package.
R Session Info
Information about the R environment and capabilities:
R version 4.4.2 (2024-10-31)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 24.04.1 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so; LAPACK version 3.12.0
locale:
[1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8
[4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8
[7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C
time zone: UTC
tzcode source: system (glibc)
attached base packages:
[1] tools stats graphics grDevices utils datasets methods
[8] base
loaded via a namespace (and not attached):
[1] riskreports_0.0.0.9003 compiler_4.4.2 fastmap_1.2.0
[4] cli_3.6.4 htmltools_0.5.8.1 yaml_2.3.10
[7] rmarkdown_2.29 knitr_1.49 jsonlite_1.8.9
[10] xfun_0.50 digest_0.6.37 rlang_1.1.5
[13] evaluate_1.0.3 Platform used:
OS.type file.sep dynlib.ext GUI endian pkgType path.sep
"unix" "/" ".so" "X11" "little" "source" ":"
r_arch
"" R’s capabilities:
jpeg png tiff tcltk X11 aqua
TRUE TRUE TRUE TRUE FALSE FALSE
http/ftp sockets libxml fifo cledit iconv
TRUE TRUE FALSE TRUE FALSE TRUE
NLS Rprof profmem cairo ICU long.double
TRUE TRUE TRUE TRUE TRUE TRUE
libcurl
TRUE External software:
zlib
"1.3"
bzlib
"1.0.8, 13-Jul-2019"
xz
"5.4.5"
libdeflate
"1.19"
PCRE
"10.42 2022-12-11"
ICU
"74.2"
TRE
"TRE 0.8.0 R_fixes (BSD)"
iconv
"glibc 2.39"
readline
"8.2"
BLAS
"/usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3" Graphics external software:
cairo cairoFT pango
"1.18.0" "" "1.52.1"
libpng jpeg libtiff
"1.6.43" "8.0" "LIBTIFF, Version 4.5.1" Numerical characteristics of the machine:
double.eps double.neg.eps double.xmin
2.220446e-16 1.110223e-16 2.225074e-308
double.xmax double.base double.digits
1.797693e+308 2.000000e+00 5.300000e+01
double.rounding double.guard double.ulp.digits
5.000000e+00 0.000000e+00 -5.200000e+01
double.neg.ulp.digits double.exponent double.min.exp
-5.300000e+01 1.100000e+01 -1.022000e+03
double.max.exp integer.max sizeof.long
1.024000e+03 2.147484e+09 8.000000e+00
sizeof.longlong sizeof.longdouble sizeof.pointer
8.000000e+00 1.600000e+01 8.000000e+00
sizeof.time_t longdouble.eps longdouble.neg.eps
8.000000e+00 1.084202e-19 5.421011e-20
longdouble.digits longdouble.rounding longdouble.guard
6.400000e+01 5.000000e+00 0.000000e+00
longdouble.ulp.digits longdouble.neg.ulp.digits longdouble.exponent
-6.300000e+01 -6.400000e+01 1.500000e+01
longdouble.min.exp longdouble.max.exp
-1.638200e+04 1.638400e+04 Random number generation process:
[1] "Mersenne-Twister" "Inversion" "Rejection" Information about the environment
Environmental and options variables affect how package checks and software in it might behave. Here is the environmental variables when running this report
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RUNNER_PERFLOG
PHARMAPKGS_EXCLUDED_METRICS
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TZ UTC
USER runner
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$bitmapType
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$browser
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$callr.condition_handler_cli_message
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<bytecode: 0x56498c69c910>
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