Validation Report - apollo@0.3.5
Context
This report is fully automated and builds on rhub/ref-image image. Documents the installation of this package on an open source R environment, focusing on:
- Installation environment description
- Testing coverage
It is limited to assess whether unit tests and documentation are present and can execute without error. An assessment would be required that the tests and documentation are meaningful.
Package apollo
Metric based risk assessment
The following metrics are derived from the riskmetric R package.
| has_news | 0 |
| exported_namespace | 96 |
| has_vignettes | 2 |
| export_help | 96 |
| has_website | TRUE |
| has_maintainer | Stephane Hess S.Hess@leeds.ac.uk |
| bugs_status | scraping bug reports fromm BugReports host ‘apollochoicemodelling’ not implemented |
| assess_size_codebase | 16280 |
| has_bug_reports_url | 1 |
| downloads_1yr | 28345 |
| reverse_dependencies | 2 |
| has_examples | 1 |
| dependencies | 23 |
| license | GPL-2 |
Package general assessment: Coverage, check results, size, download the last year, reverse dependencies and number of dependencies.
Dependencies
Overall the package has these dependencies:
| package | type | |
|---|---|---|
| 1 | stats | Depends |
| 2 | utils | Depends |
| 3 | Rcpp (>= 1.0.0) | Imports |
| 4 | maxLik | Imports |
| 5 | mnormt | Imports |
| 6 | mvtnorm | Imports |
| 7 | graphics | Imports |
| 8 | randtoolbox | Imports |
| 9 | numDeriv | Imports |
| 10 | parallel | Imports |
| 11 | Deriv | Imports |
| 12 | matrixStats | Imports |
| 13 | RSGHB | Imports |
| 14 | coda | Imports |
| 15 | tibble | Imports |
| 16 | stringr | Imports |
| 17 | bgw (>= 0.1.3) | Imports |
| 18 | cli | Imports |
| 19 | Rsolnp | Imports |
| 20 | rstudioapi | Imports |
| 21 | Rcpp | LinkingTo |
| 22 | RcppArmadillo | LinkingTo |
| 23 | RcppEigen | LinkingTo |
Package dependencies
Reverse dependencies
Overall the package has 2 reverse dependencies:
logitr, support.BWS
Namespace
Overall the package has 96 exported objects. 96 are documented:
apollo_addCovariance apollo_attach
TRUE TRUE
apollo_avgInterDraws apollo_avgIntraDraws
TRUE TRUE
apollo_basTest apollo_bootstrap
TRUE TRUE
apollo_checkArguments apollo_choiceAnalysis
TRUE TRUE
apollo_classAlloc apollo_cnl
TRUE TRUE
apollo_cnl2 apollo_combineModels
TRUE TRUE
apollo_combineResults apollo_compareInputs
TRUE TRUE
apollo_conditionals apollo_deltaMethod
TRUE TRUE
apollo_detach apollo_dft
TRUE TRUE
apollo_diagnostics apollo_dVdB
TRUE TRUE
apollo_dVdBOld apollo_el
TRUE TRUE
apollo_emdc apollo_emdc1
TRUE TRUE
apollo_emdc2 apollo_estimate
TRUE TRUE
apollo_estimateHB apollo_expandLoop
TRUE TRUE
apollo_firstRow apollo_fitsTest
TRUE TRUE
apollo_fmnl apollo_fnl
TRUE TRUE
apollo_initialise apollo_insertComponentName
TRUE TRUE
apollo_insertFunc apollo_insertOLList
TRUE TRUE
apollo_insertRows apollo_insertRRMQuotes
TRUE TRUE
apollo_insertScaling apollo_keepRows
TRUE TRUE
apollo_lc apollo_lcConditionals
TRUE TRUE
apollo_lcEM apollo_lcUnconditionals
TRUE TRUE
apollo_llCalc apollo_loadModel
TRUE TRUE
apollo_longToWide apollo_lrTest
TRUE TRUE
apollo_makeCluster apollo_makeDraws
TRUE TRUE
apollo_makeGrad apollo_makeHessian
TRUE TRUE
apollo_makeLogLike apollo_mdcev
TRUE TRUE
apollo_mdcev2 apollo_mdcnev
TRUE TRUE
apollo_mixConditionals apollo_mixEM
TRUE TRUE
apollo_mixUnconditionals apollo_mlhs
TRUE TRUE
apollo_mnl apollo_modelOutput
TRUE TRUE
apollo_modifyUserDefFunc apollo_nl
TRUE TRUE
apollo_normalDensity apollo_ol
TRUE TRUE
apollo_op apollo_outOfSample
TRUE TRUE
apollo_ownModel apollo_panelProd
TRUE TRUE
apollo_prediction apollo_prepareProb
TRUE TRUE
apollo_preprocess apollo_print
TRUE TRUE
apollo_readBeta apollo_rrm
TRUE TRUE
apollo_saveOutput apollo_searchStart
TRUE TRUE
apollo_setRows apollo_setWorkDir
TRUE TRUE
apollo_sharesTest apollo_sink
TRUE TRUE
apollo_speedTest apollo_tobit
TRUE TRUE
apollo_unconditionals apollo_validate
TRUE TRUE
apollo_validateControl apollo_validateData
TRUE TRUE
apollo_validateHBControl apollo_validateInputs
TRUE TRUE
apollo_varcov apollo_varList
TRUE TRUE
apollo_weighting apollo_writeF12
TRUE TRUE
apollo_writeTheta aux_validateRows
TRUE TRUE Examples
There are 103 help pages with examples, from 103 (100.00 %).
NEWS
The package has NEWS file and it is current.
License
The package uses .
Installation environment
System Info
| Field | Value |
|---|---|
| Image | rhub/ref-image |
| OS | Ubuntu 24.04.2 LTS |
| Platform | x86_64-pc-linux-gnu |
| System | x86_64, linux-gnu |
| Execution Time | 2025-03-14 03:26:19 UTC |
System information. Table about the system used to check the package.
R Session Info
Information about the R environment and capabilities:
R version 4.4.3 (2025-02-28)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 24.04.2 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so; LAPACK version 3.12.0
locale:
[1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8
[4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8
[7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C
time zone: UTC
tzcode source: system (glibc)
attached base packages:
[1] tools stats graphics grDevices utils datasets methods
[8] base
loaded via a namespace (and not attached):
[1] riskreports_0.0.0.9003 compiler_4.4.3 fastmap_1.2.0
[4] cli_3.6.4 htmltools_0.5.8.1 yaml_2.3.10
[7] rmarkdown_2.29 knitr_1.49 jsonlite_1.9.1
[10] xfun_0.51 digest_0.6.37 rlang_1.1.5
[13] evaluate_1.0.3 Platform used:
OS.type file.sep dynlib.ext GUI endian pkgType path.sep
"unix" "/" ".so" "X11" "little" "source" ":"
r_arch
"" R’s capabilities:
jpeg png tiff tcltk X11 aqua
TRUE TRUE TRUE TRUE FALSE FALSE
http/ftp sockets libxml fifo cledit iconv
TRUE TRUE FALSE TRUE FALSE TRUE
NLS Rprof profmem cairo ICU long.double
TRUE TRUE TRUE TRUE TRUE TRUE
libcurl
TRUE External software:
zlib
"1.3"
bzlib
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xz
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libdeflate
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PCRE
"10.42 2022-12-11"
ICU
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TRE
"TRE 0.8.0 R_fixes (BSD)"
iconv
"glibc 2.39"
readline
"8.2"
BLAS
"/usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3" Graphics external software:
cairo cairoFT pango
"1.18.0" "" "1.52.1"
libpng jpeg libtiff
"1.6.43" "8.0" "LIBTIFF, Version 4.5.1" Numerical characteristics of the machine:
double.eps double.neg.eps double.xmin
2.220446e-16 1.110223e-16 2.225074e-308
double.xmax double.base double.digits
1.797693e+308 2.000000e+00 5.300000e+01
double.rounding double.guard double.ulp.digits
5.000000e+00 0.000000e+00 -5.200000e+01
double.neg.ulp.digits double.exponent double.min.exp
-5.300000e+01 1.100000e+01 -1.022000e+03
double.max.exp integer.max sizeof.long
1.024000e+03 2.147484e+09 8.000000e+00
sizeof.longlong sizeof.longdouble sizeof.pointer
8.000000e+00 1.600000e+01 8.000000e+00
sizeof.time_t longdouble.eps longdouble.neg.eps
8.000000e+00 1.084202e-19 5.421011e-20
longdouble.digits longdouble.rounding longdouble.guard
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longdouble.ulp.digits longdouble.neg.ulp.digits longdouble.exponent
-6.300000e+01 -6.400000e+01 1.500000e+01
longdouble.min.exp longdouble.max.exp
-1.638200e+04 1.638400e+04 Random number generation process:
[1] "Mersenne-Twister" "Inversion" "Rejection" Information about the environment
Environmental and options variables affect how package checks and software in it might behave. Here is the environmental variables when running this report
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PHARMAPKGS_EXCLUDED_METRICS
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