Validation Report - animint2@2025.1.28
Context
This report is fully automated and builds on rhub/ref-image image. Documents the installation of this package on an open source R environment, focusing on:
- Installation environment description
- Testing coverage
It is limited to assess whether unit tests and documentation are present and can execute without error. An assessment would be required that the tests and documentation are meaningful.
Package animint2
Metric based risk assessment
The following metrics are derived from the riskmetric R package.
| has_news | 1 |
| news_current | TRUE |
| exported_namespace | 390 |
| has_vignettes | 0 |
| export_help | 390 |
| has_website | TRUE |
| has_maintainer | Toby Hocking toby.hocking@r-project.org |
| bugs_status | subscript out of bounds |
| size_codebase | 12355 |
| has_bug_reports_url | 1 |
| downloads_1yr | 7472 |
| reverse_dependencies | 1 |
| has_examples | 1 |
| dependencies | 13 |
| license | GPL-3 |
Package general assessment: Coverage, check results, size, download the last year, reverse dependencies and number of dependencies.
Dependencies
Overall the package has these dependencies:
| package | type | |
|---|---|---|
| 1 | servr | Imports |
| 2 | digest | Imports |
| 3 | RJSONIO | Imports |
| 4 | grid | Imports |
| 5 | gtable (>= 0.1.1) | Imports |
| 6 | MASS | Imports |
| 7 | plyr (>= 1.7.1) | Imports |
| 8 | reshape2 | Imports |
| 9 | scales (>= 0.4.1) | Imports |
| 10 | stats | Imports |
| 11 | knitr (>= 1.5.33) | Imports |
| 12 | data.table (>= 1.9.8) | Imports |
| 13 | methods | Imports |
Package dependencies
Reverse dependencies
Overall the package has 1 reverse dependencies:
mlr3resampling
Namespace
Overall the package has 390 exported objects. 388 are documented:
.pt .stroke %+%
TRUE TRUE FALSE
%+replace% a_scales_list aes
FALSE TRUE TRUE
aes_ aes_all aes_auto
TRUE TRUE TRUE
aes_q aes_string alpha
TRUE TRUE TRUE
animint animint2dir animint2pages
TRUE TRUE TRUE
animintOutput annotate annotation_custom
TRUE TRUE TRUE
annotation_logticks annotation_map annotation_raster
TRUE TRUE TRUE
arrow as_labeller autoplot
TRUE TRUE TRUE
benchplot borders calc_element
TRUE TRUE TRUE
continuous_scale Coord coord_cartesian
TRUE TRUE TRUE
coord_equal coord_fixed coord_flip
TRUE TRUE TRUE
coord_map coord_munch coord_polar
TRUE TRUE TRUE
coord_quickmap coord_trans CoordCartesian
TRUE TRUE TRUE
CoordFixed CoordFlip CoordMap
TRUE TRUE TRUE
CoordPolar CoordQuickmap CoordTrans
TRUE TRUE TRUE
cut_interval cut_number cut_width
TRUE TRUE TRUE
discrete_scale draw_key_abline draw_key_blank
TRUE TRUE TRUE
draw_key_crossbar draw_key_dotplot draw_key_label
TRUE TRUE TRUE
draw_key_path draw_key_point draw_key_pointrange
TRUE TRUE TRUE
draw_key_polygon draw_key_rect draw_key_smooth
TRUE TRUE TRUE
draw_key_text draw_key_vline draw_key_vpath
TRUE TRUE TRUE
element_blank element_grob element_line
TRUE TRUE TRUE
element_rect element_text expand_limits
TRUE TRUE TRUE
facet facet_grid facet_null
TRUE TRUE TRUE
facet_wrap fortify Geom
TRUE TRUE TRUE
geom_abline geom_area geom_bar
TRUE TRUE TRUE
geom_bin2d geom_blank geom_contour
TRUE TRUE TRUE
geom_count geom_crossbar geom_curve
TRUE TRUE TRUE
geom_density geom_density_2d geom_density2d
TRUE TRUE TRUE
geom_dotplot geom_errorbar geom_errorbarh
TRUE TRUE TRUE
geom_freqpoly geom_hex geom_histogram
TRUE TRUE TRUE
geom_hline geom_jitter geom_label
TRUE TRUE TRUE
geom_line geom_linerange geom_map
TRUE TRUE TRUE
geom_path geom_point geom_pointrange
TRUE TRUE TRUE
geom_polygon geom_qq geom_raster
TRUE TRUE TRUE
geom_rect geom_ribbon geom_rug
TRUE TRUE TRUE
geom_segment geom_smooth geom_spoke
TRUE TRUE TRUE
geom_step geom_tallrect geom_text
TRUE TRUE TRUE
geom_tile geom_violin geom_vline
TRUE TRUE TRUE
geom_widerect GeomAbline GeomAnnotationMap
TRUE TRUE TRUE
GeomArea GeomBar GeomBin2d
TRUE TRUE TRUE
GeomBlank GeomContour GeomCrossbar
TRUE TRUE TRUE
GeomCurve GeomCustomAnn GeomDensity
TRUE TRUE TRUE
GeomDensity2d GeomDotplot GeomErrorbar
TRUE TRUE TRUE
GeomErrorbarh GeomFreqpoly GeomHex
TRUE TRUE TRUE
GeomHline GeomLabel GeomLine
TRUE TRUE TRUE
GeomLinerange GeomLogticks GeomMap
TRUE TRUE TRUE
GeomPath GeomPoint GeomPointrange
TRUE TRUE TRUE
GeomPolygon GeomRaster GeomRasterAnn
TRUE TRUE TRUE
GeomRect GeomRibbon GeomRug
TRUE TRUE TRUE
GeomSegment GeomSmooth GeomSpoke
TRUE TRUE TRUE
GeomStep GeomTallRect GeomText
TRUE TRUE TRUE
GeomTile GeomViolin GeomVline
TRUE TRUE TRUE
GeomWideRect getLegendList gg_dep
TRUE TRUE TRUE
gganimintproto gganimintproto_parent ggplot
TRUE TRUE TRUE
ggplot_build ggplot_gtable ggplotGrob
TRUE TRUE TRUE
ggsave ggtitle guide_colorbar
TRUE TRUE TRUE
guide_colourbar guide_legend guides
TRUE TRUE TRUE
is.Coord is.facet is.gganimintproto
TRUE TRUE TRUE
is.ggplot is.rgb is.theme
TRUE TRUE TRUE
label_both label_bquote label_context
TRUE TRUE TRUE
label_parsed label_value label_wrap_gen
TRUE TRUE TRUE
labeller labs last_plot
TRUE TRUE TRUE
layer layer_data layer_grob
TRUE TRUE TRUE
layer_scales lims make_bar
TRUE TRUE TRUE
make_tallrect make_tallrect_or_widerect make_text
TRUE TRUE TRUE
make_widerect map_data margin
TRUE TRUE TRUE
mean_cl_boot mean_cl_normal mean_sdl
TRUE TRUE TRUE
mean_se median_hilow parsePlot
TRUE TRUE TRUE
Position position_dodge position_fill
TRUE TRUE TRUE
position_identity position_jitter position_jitterdodge
TRUE TRUE TRUE
position_nudge position_stack PositionDodge
TRUE TRUE TRUE
PositionFill PositionIdentity PositionJitter
TRUE TRUE TRUE
PositionJitterdodge PositionNudge PositionStack
TRUE TRUE TRUE
qplot quickplot rel
TRUE TRUE TRUE
remove_missing renderAnimint resolution
TRUE TRUE TRUE
Scale scale_alpha scale_alpha_continuous
TRUE TRUE TRUE
scale_alpha_discrete scale_alpha_identity scale_alpha_manual
TRUE TRUE TRUE
scale_color_brewer scale_color_continuous scale_color_discrete
TRUE TRUE TRUE
scale_color_distiller scale_color_gradient scale_color_gradient2
TRUE TRUE TRUE
scale_color_gradientn scale_color_grey scale_color_hue
TRUE TRUE TRUE
scale_color_identity scale_color_manual scale_colour_brewer
TRUE TRUE TRUE
scale_colour_continuous scale_colour_date scale_colour_datetime
TRUE TRUE TRUE
scale_colour_discrete scale_colour_distiller scale_colour_gradient
TRUE TRUE TRUE
scale_colour_gradient2 scale_colour_gradientn scale_colour_grey
TRUE TRUE TRUE
scale_colour_hue scale_colour_identity scale_colour_manual
TRUE TRUE TRUE
scale_fill_brewer scale_fill_continuous scale_fill_date
TRUE TRUE TRUE
scale_fill_datetime scale_fill_discrete scale_fill_distiller
TRUE TRUE TRUE
scale_fill_gradient scale_fill_gradient2 scale_fill_gradientn
TRUE TRUE TRUE
scale_fill_grey scale_fill_hue scale_fill_identity
TRUE TRUE TRUE
scale_fill_manual scale_linetype scale_linetype_continuous
TRUE TRUE TRUE
scale_linetype_discrete scale_linetype_identity scale_linetype_manual
TRUE TRUE TRUE
scale_radius scale_shape scale_shape_continuous
TRUE TRUE TRUE
scale_shape_discrete scale_shape_identity scale_shape_manual
TRUE TRUE TRUE
scale_size scale_size_animint scale_size_area
TRUE TRUE TRUE
scale_size_continuous scale_size_date scale_size_datetime
TRUE TRUE TRUE
scale_size_discrete scale_size_identity scale_size_manual
TRUE TRUE TRUE
scale_x_continuous scale_x_date scale_x_datetime
TRUE TRUE TRUE
scale_x_discrete scale_x_log10 scale_x_reverse
TRUE TRUE TRUE
scale_x_sqrt scale_y_continuous scale_y_date
TRUE TRUE TRUE
scale_y_datetime scale_y_discrete scale_y_log10
TRUE TRUE TRUE
scale_y_reverse scale_y_sqrt ScaleContinuous
TRUE TRUE TRUE
ScaleContinuousDate ScaleContinuousDatetime ScaleContinuousIdentity
TRUE TRUE TRUE
ScaleContinuousPosition ScaleDiscrete ScaleDiscreteIdentity
TRUE TRUE TRUE
ScaleDiscretePosition ScalesList should_stop
TRUE TRUE TRUE
Stat stat_bin stat_bin_2d
TRUE TRUE TRUE
stat_bin_hex stat_bin2d stat_binhex
TRUE TRUE TRUE
stat_contour stat_count stat_density
TRUE TRUE TRUE
stat_density_2d stat_density2d stat_ecdf
TRUE TRUE TRUE
stat_ellipse stat_function stat_identity
TRUE TRUE TRUE
stat_qq stat_smooth stat_spoke
TRUE TRUE TRUE
stat_sum stat_summary stat_summary_2d
TRUE TRUE TRUE
stat_summary_bin stat_summary_hex stat_summary2d
TRUE TRUE TRUE
stat_unique stat_ydensity StatBin
TRUE TRUE TRUE
StatBin2d StatBindot StatBinhex
TRUE TRUE TRUE
StatContour StatCount StatDensity
TRUE TRUE TRUE
StatDensity2d StatEcdf StatEllipse
TRUE TRUE TRUE
StatFunction StatIdentity StatQq
TRUE TRUE TRUE
StatSmooth StatSum StatSummary
TRUE TRUE TRUE
StatSummary2d StatSummaryBin StatSummaryHex
TRUE TRUE TRUE
StatUnique StatYdensity theme
TRUE TRUE TRUE
theme_animint theme_bw theme_classic
TRUE TRUE TRUE
theme_dark theme_get theme_gray
TRUE TRUE TRUE
theme_grey theme_light theme_linedraw
TRUE TRUE TRUE
theme_minimal theme_replace theme_set
TRUE TRUE TRUE
theme_update theme_void toRGB
TRUE TRUE TRUE
transform_position unit update_gallery
TRUE TRUE TRUE
update_geom_defaults update_labels update_stat_defaults
TRUE TRUE TRUE
waiver xlab xlim
TRUE TRUE TRUE
ylab ylim zeroGrob
TRUE TRUE TRUE Examples
There are 215 help pages with examples, from 215 (100.00 %).
NEWS
The package has NEWS file and it is current.
License
The package uses .
Installation environment
System Info
| Field | Value |
|---|---|
| Image | rhub/ref-image |
| OS | Ubuntu 24.04.1 LTS |
| Platform | x86_64-pc-linux-gnu |
| System | x86_64, linux-gnu |
| Execution Time | 2025-02-14 06:54:56 UTC |
System information. Table about the system used to check the package.
R Session Info
Information about the R environment and capabilities:
R version 4.4.2 (2024-10-31)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 24.04.1 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so; LAPACK version 3.12.0
locale:
[1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8
[4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8
[7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C
time zone: UTC
tzcode source: system (glibc)
attached base packages:
[1] tools stats graphics grDevices utils datasets methods
[8] base
loaded via a namespace (and not attached):
[1] riskreports_0.0.0.9003 compiler_4.4.2 fastmap_1.2.0
[4] cli_3.6.4 htmltools_0.5.8.1 yaml_2.3.10
[7] rmarkdown_2.29 knitr_1.49 jsonlite_1.8.9
[10] xfun_0.50 digest_0.6.37 rlang_1.1.5
[13] evaluate_1.0.3 Platform used:
OS.type file.sep dynlib.ext GUI endian pkgType path.sep
"unix" "/" ".so" "X11" "little" "source" ":"
r_arch
"" R’s capabilities:
jpeg png tiff tcltk X11 aqua
TRUE TRUE TRUE TRUE FALSE FALSE
http/ftp sockets libxml fifo cledit iconv
TRUE TRUE FALSE TRUE FALSE TRUE
NLS Rprof profmem cairo ICU long.double
TRUE TRUE TRUE TRUE TRUE TRUE
libcurl
TRUE External software:
zlib
"1.3"
bzlib
"1.0.8, 13-Jul-2019"
xz
"5.4.5"
libdeflate
"1.19"
PCRE
"10.42 2022-12-11"
ICU
"74.2"
TRE
"TRE 0.8.0 R_fixes (BSD)"
iconv
"glibc 2.39"
readline
"8.2"
BLAS
"/usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3" Graphics external software:
cairo cairoFT pango
"1.18.0" "" "1.52.1"
libpng jpeg libtiff
"1.6.43" "8.0" "LIBTIFF, Version 4.5.1" Numerical characteristics of the machine:
double.eps double.neg.eps double.xmin
2.220446e-16 1.110223e-16 2.225074e-308
double.xmax double.base double.digits
1.797693e+308 2.000000e+00 5.300000e+01
double.rounding double.guard double.ulp.digits
5.000000e+00 0.000000e+00 -5.200000e+01
double.neg.ulp.digits double.exponent double.min.exp
-5.300000e+01 1.100000e+01 -1.022000e+03
double.max.exp integer.max sizeof.long
1.024000e+03 2.147484e+09 8.000000e+00
sizeof.longlong sizeof.longdouble sizeof.pointer
8.000000e+00 1.600000e+01 8.000000e+00
sizeof.time_t longdouble.eps longdouble.neg.eps
8.000000e+00 1.084202e-19 5.421011e-20
longdouble.digits longdouble.rounding longdouble.guard
6.400000e+01 5.000000e+00 0.000000e+00
longdouble.ulp.digits longdouble.neg.ulp.digits longdouble.exponent
-6.300000e+01 -6.400000e+01 1.500000e+01
longdouble.min.exp longdouble.max.exp
-1.638200e+04 1.638400e+04 Random number generation process:
[1] "Mersenne-Twister" "Inversion" "Rejection" Information about the environment
Environmental and options variables affect how package checks and software in it might behave. Here is the environmental variables when running this report
_R_CHECK_SYSTEM_CLOCK_
FALSE
ACCEPT_EULA Y
ACTIONS_RUNNER_ACTION_ARCHIVE_CACHE
/opt/actionarchivecache
AGENT_TOOLSDIRECTORY /opt/hostedtoolcache
ANDROID_HOME /usr/local/lib/android/sdk
ANDROID_NDK /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_HOME /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_LATEST_HOME
/usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_ROOT /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_SDK_ROOT /usr/local/lib/android/sdk
ANT_HOME /usr/share/ant
AZURE_EXTENSION_DIR /opt/az/azcliextensions
BOOTSTRAP_HASKELL_NONINTERACTIVE
1
BUNDLE_EXT linux-amd64.deb
CHROME_BIN /usr/bin/google-chrome
CHROMEWEBDRIVER /usr/local/share/chromedriver-linux64
CI true
CONDA /usr/share/miniconda
DEBIAN_FRONTEND noninteractive
DENO_DOM_PLUGIN /opt/quarto/bin/tools/x86_64/deno_dom/libplugin.so
DENO_NO_UPDATE_CHECK 1
DENO_TLS_CA_STORE system,mozilla
DEPLOYMENT_BASEPATH /opt/runner
DOTNET_MULTILEVEL_LOOKUP
0
DOTNET_NOLOGO 1
DOTNET_SKIP_FIRST_TIME_EXPERIENCE
1
EDGEWEBDRIVER /usr/local/share/edge_driver
EDITOR vi
GECKOWEBDRIVER /usr/local/share/gecko_driver
GHCUP_INSTALL_BASE_PREFIX
/usr/local
GITHUB_ACTION __run
GITHUB_ACTION_REF
GITHUB_ACTION_REPOSITORY
GITHUB_ACTIONS true
GITHUB_ACTOR Gotfrid
GITHUB_ACTOR_ID 8464262
GITHUB_API_URL https://api.github.com
GITHUB_BASE_REF
GITHUB_ENV /home/runner/work/_temp/_runner_file_commands/set_env_f6c8d8cb-0607-4376-9ed1-89a505373e7d
GITHUB_EVENT_NAME workflow_dispatch
GITHUB_EVENT_PATH /home/runner/work/_temp/_github_workflow/event.json
GITHUB_GRAPHQL_URL https://api.github.com/graphql
GITHUB_HEAD_REF
GITHUB_JOB main
GITHUB_OUTPUT /home/runner/work/_temp/_runner_file_commands/set_output_f6c8d8cb-0607-4376-9ed1-89a505373e7d
GITHUB_PATH /home/runner/work/_temp/_runner_file_commands/add_path_f6c8d8cb-0607-4376-9ed1-89a505373e7d
GITHUB_REF refs/heads/main
GITHUB_REF_NAME main
GITHUB_REF_PROTECTED false
GITHUB_REF_TYPE branch
GITHUB_REPOSITORY pharmaR/pharmapkgs
GITHUB_REPOSITORY_ID 798326913
GITHUB_REPOSITORY_OWNER
pharmaR
GITHUB_REPOSITORY_OWNER_ID
42115094
GITHUB_RETENTION_DAYS 90
GITHUB_RUN_ATTEMPT 1
GITHUB_RUN_ID 13323516711
GITHUB_RUN_NUMBER 86
GITHUB_SERVER_URL https://github.com
GITHUB_SHA d790b87bd807399b7640c7bca6ec67a96a6b839e
GITHUB_STATE /home/runner/work/_temp/_runner_file_commands/save_state_f6c8d8cb-0607-4376-9ed1-89a505373e7d
GITHUB_STEP_SUMMARY /home/runner/work/_temp/_runner_file_commands/step_summary_f6c8d8cb-0607-4376-9ed1-89a505373e7d
GITHUB_TRIGGERING_ACTOR
Gotfrid
GITHUB_WORKFLOW Update package repositories
GITHUB_WORKFLOW_REF pharmaR/pharmapkgs/.github/workflows/update-repos.yml@refs/heads/main
GITHUB_WORKFLOW_SHA d790b87bd807399b7640c7bca6ec67a96a6b839e
GITHUB_WORKSPACE /home/runner/work/pharmapkgs/pharmapkgs
GOROOT_1_21_X64 /opt/hostedtoolcache/go/1.21.13/x64
GOROOT_1_22_X64 /opt/hostedtoolcache/go/1.22.12/x64
GOROOT_1_23_X64 /opt/hostedtoolcache/go/1.23.6/x64
GRADLE_HOME /usr/share/gradle-8.12.1
HOME /home/runner
HOMEBREW_CLEANUP_PERIODIC_FULL_DAYS
3650
HOMEBREW_NO_AUTO_UPDATE
1
ImageOS ubuntu24
ImageVersion 20250209.1.0
INVOCATION_ID 173b090202a445c984b291dd28076462
JAVA_HOME /usr/lib/jvm/temurin-17-jdk-amd64
JAVA_HOME_11_X64 /usr/lib/jvm/temurin-11-jdk-amd64
JAVA_HOME_17_X64 /usr/lib/jvm/temurin-17-jdk-amd64
JAVA_HOME_21_X64 /usr/lib/jvm/temurin-21-jdk-amd64
JAVA_HOME_8_X64 /usr/lib/jvm/temurin-8-jdk-amd64
JOURNAL_STREAM 8:7727
LANG C.UTF-8
LD_LIBRARY_PATH /opt/R/4.4.2/lib/R/lib:/usr/local/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/temurin-17-jdk-amd64/lib/server:/opt/R/4.4.2/lib/R/lib:/usr/local/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/temurin-17-jdk-amd64/lib/server
LN_S ln -s
LOGGER_LOG_LEVEL DEBUG
MAKE make
MEMORY_PRESSURE_WATCH /sys/fs/cgroup/system.slice/runner-provisioner.service/memory.pressure
MEMORY_PRESSURE_WRITE c29tZSAyMDAwMDAgMjAwMDAwMAA=
NOT_CRAN true
NVM_DIR /home/runner/.nvm
PAGER /usr/bin/pager
PATH /snap/bin:/home/runner/.local/bin:/opt/pipx_bin:/home/runner/.cargo/bin:/home/runner/.config/composer/vendor/bin:/usr/local/.ghcup/bin:/home/runner/.dotnet/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
PERFLOG_LOCATION_SETTING
RUNNER_PERFLOG
PHARMAPKGS_EXCLUDED_METRICS
assess_covr_coverage,assess_r_cmd_check
PHARMAPKGS_LIMIT 500
PHARMAPKGS_PLATFORM ubuntu-22.04
PHARMAPKGS_R_VERSION 4.4
PHARMAPKGS_REMOTE_REPO
https://cloud.r-project.org/
PIPX_BIN_DIR /opt/pipx_bin
PIPX_HOME /opt/pipx
PKGCACHE_HTTP_VERSION 2
PKGLOAD_PARENT_TEMPDIR
/tmp/RtmpBUYGbc
POWERSHELL_DISTRIBUTION_CHANNEL
GitHub-Actions-ubuntu24
PROCESSX_PS726d3c920bc0_1739516094
YES
PWD /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_BIN_PATH /opt/quarto/bin
QUARTO_DENO /opt/quarto/bin/tools/x86_64/deno
QUARTO_DOCUMENT_PATH /home/runner/work/pharmapkgs/pharmapkgs/inst/report
QUARTO_PROFILE
QUARTO_PROJECT_DIR /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_PROJECT_ROOT /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_ROOT /
QUARTO_SHARE_PATH /opt/quarto/share
R_ARCH
R_BROWSER xdg-open
R_BZIPCMD /usr/bin/bzip2
R_DOC_DIR /opt/R/4.4.2/lib/R/doc
R_GZIPCMD /usr/bin/gzip
R_HOME /opt/R/4.4.2/lib/R
R_INCLUDE_DIR /opt/R/4.4.2/lib/R/include
R_LIB_FOR_PAK /opt/R/4.4.2/lib/R/site-library
R_LIBS_SITE /opt/R/4.4.2/lib/R/site-library
R_LIBS_USER /home/runner/work/_temp/Library
R_PAPERSIZE letter
R_PAPERSIZE_USER letter
R_PDFVIEWER /usr/bin/xdg-open
R_PLATFORM x86_64-pc-linux-gnu
R_PRINTCMD /usr/bin/lpr
R_RD4PDF times,inconsolata,hyper
R_SESSION_TMPDIR /tmp/RtmpcKntAc
R_SHARE_DIR /opt/R/4.4.2/lib/R/share
R_STRIP_SHARED_LIB strip --strip-unneeded
R_STRIP_STATIC_LIB strip --strip-debug
R_TEXI2DVICMD /usr/bin/texi2dvi
R_UNZIPCMD /usr/bin/unzip
R_ZIPCMD /usr/bin/zip
RUNNER_ARCH X64
RUNNER_ENVIRONMENT github-hosted
RUNNER_NAME GitHub Actions 13
RUNNER_OS Linux
RUNNER_PERFLOG /home/runner/perflog
RUNNER_TEMP /home/runner/work/_temp
RUNNER_TOOL_CACHE /opt/hostedtoolcache
RUNNER_TRACKING_ID github_05609c14-ef8b-4640-9d49-0f5a08371745
RUNNER_USER runner
RUNNER_WORKSPACE /home/runner/work/pharmapkgs
SED /usr/bin/sed
SELENIUM_JAR_PATH /usr/share/java/selenium-server.jar
SGX_AESM_ADDR 1
SHLVL 1
STATS_D true
STATS_D_D true
STATS_D_TC true
STATS_EXT true
STATS_EXTP https://provjobdprod.z13.web.core.windows.net/settings/provjobdsettings-latest/provjobd.data
STATS_PIP false
STATS_RDCL true
STATS_TRP true
STATS_UE true
STATS_V3PS true
STATS_VMD true
STATS_VMFE true
SWIFT_PATH /usr/share/swift/usr/bin
SYSTEMD_EXEC_PID 831
TAR /usr/bin/tar
TZ UTC
USER runner
VCPKG_INSTALLATION_ROOT
/usr/local/share/vcpkg
XDG_CONFIG_HOME /home/runner/.config
XDG_RUNTIME_DIR /run/user/1001These are the options set to generate the report:
$add.smooth
[1] TRUE
$bitmapType
[1] "cairo"
$browser
[1] "xdg-open"
$browserNLdisabled
[1] FALSE
$callr.condition_handler_cli_message
function (msg)
{
custom_handler <- getOption("cli.default_handler")
if (is.function(custom_handler)) {
custom_handler(msg)
}
else {
cli_server_default(msg)
}
}
<bytecode: 0x55bb2959e910>
<environment: namespace:cli>
$catch.script.errors
[1] FALSE
$CBoundsCheck
[1] FALSE
$check.bounds
[1] FALSE
$citation.bibtex.max
[1] 1
$continue
[1] "+ "
$contrasts
unordered ordered
"contr.treatment" "contr.poly"
$covr.record_tests
[1] TRUE
$defaultPackages
[1] "datasets" "utils" "grDevices" "graphics" "stats" "methods"
$demo.ask
[1] "default"
$deparse.cutoff
[1] 60
$device
function (width = 7, height = 7, ...)
{
grDevices::pdf(NULL, width, height, ...)
}
<bytecode: 0x55bb2a6d6ea0>
<environment: namespace:knitr>
$device.ask.default
[1] FALSE
$digits
[1] 7
$dvipscmd
[1] "dvips"
$echo
[1] FALSE
$editor
[1] "vi"
$encoding
[1] "native.enc"
$example.ask
[1] "default"
$expressions
[1] 5000
$help.search.types
[1] "vignette" "demo" "help"
$help.try.all.packages
[1] FALSE
$htmltools.preserve.raw
[1] TRUE
$HTTPUserAgent
[1] "R/4.4.2 R (4.4.2 x86_64-pc-linux-gnu x86_64 linux-gnu) on GitHub Actions"
$internet.info
[1] 2
$keep.parse.data
[1] TRUE
$keep.parse.data.pkgs
[1] FALSE
$keep.source
[1] FALSE
$keep.source.pkgs
[1] FALSE
$knitr.in.progress
[1] TRUE
$locatorBell
[1] TRUE
$mailer
[1] "mailto"
$matprod
[1] "default"
$max.contour.segments
[1] 25000
$max.print
[1] 99999
$menu.graphics
[1] TRUE
$na.action
[1] "na.omit"
$Ncpus
[1] 1
$nwarnings
[1] 50
$OutDec
[1] "."
$pager
[1] "/opt/R/4.4.2/lib/R/bin/pager"
$papersize
[1] "letter"
$PCRE_limit_recursion
[1] NA
$PCRE_study
[1] FALSE
$PCRE_use_JIT
[1] TRUE
$pdfviewer
[1] "/usr/bin/xdg-open"
$pkgType
[1] "source"
$printcmd
[1] "/usr/bin/lpr"
$prompt
[1] "> "
$repos
CRAN
"https://cran.rstudio.com"
$rl_word_breaks
[1] " \t\n\"\\'`><=%;,|&{()}"
$rlang_trace_top_env
<environment: R_GlobalEnv>
$scipen
[1] 0
$show.coef.Pvalues
[1] TRUE
$show.error.messages
[1] TRUE
$show.signif.stars
[1] TRUE
$showErrorCalls
[1] TRUE
$showNCalls
[1] 50
$showWarnCalls
[1] FALSE
$str
$str$strict.width
[1] "no"
$str$digits.d
[1] 3
$str$vec.len
[1] 4
$str$list.len
[1] 99
$str$deparse.lines
NULL
$str$drop.deparse.attr
[1] TRUE
$str$formatNum
function (x, ...)
format(x, trim = TRUE, drop0trailing = TRUE, ...)
<environment: 0x55bb28a76520>
$str.dendrogram.last
[1] "`"
$texi2dvi
[1] "/usr/bin/texi2dvi"
$tikzMetricsDictionary
[1] "validation_report_animint2_v2025.1.28-tikzDictionary"
$timeout
[1] 60
$try.outFile
A connection with
description ""
class "file"
mode "w+b"
text "binary"
opened "opened"
can read "yes"
can write "yes"
$ts.eps
[1] 1e-05
$ts.S.compat
[1] FALSE
$unzip
[1] "/usr/bin/unzip"
$useFancyQuotes
[1] FALSE
$verbose
[1] FALSE
$warn
[1] 0
$warning.length
[1] 1000
$warnPartialMatchArgs
[1] FALSE
$warnPartialMatchAttr
[1] FALSE
$warnPartialMatchDollar
[1] FALSE
$width
[1] 80