Validation Report - adehabitatLT@0.3.28
Context
This report is fully automated and builds on rhub/ref-image image. Documents the installation of this package on an open source R environment, focusing on:
- Installation environment description
- Testing coverage
It is limited to assess whether unit tests and documentation are present and can execute without error. An assessment would be required that the tests and documentation are meaningful.
Package adehabitatLT
Metric based risk assessment
The following metrics are derived from the riskmetric R package.
| has_news | 0 |
| exported_namespace | 94 |
| has_vignettes | 6 |
| export_help | 94 |
| has_website | FALSE |
| has_maintainer | Clement Calenge clement.calenge@ofb.gouv.fr |
| bugs_status | package DESCRIPTION does not have a BugReports field |
| size_codebase | 3637 |
| has_bug_reports_url | 0 |
| downloads_1yr | 56865 |
| reverse_dependencies | 14 |
| has_examples | 1 |
| dependencies | 9 |
| license | GPL (>= 2) |
Package general assessment: Coverage, check results, size, download the last year, reverse dependencies and number of dependencies.
Dependencies
Overall the package has these dependencies:
| package | type | |
|---|---|---|
| 1 | sp | Depends |
| 2 | methods | Depends |
| 3 | ade4 | Depends |
| 4 | adehabitatMA | Depends |
| 5 | CircStats | Depends |
| 6 | stats | Depends |
| 7 | graphics | Imports |
| 8 | grDevices | Imports |
| 9 | utils | Imports |
Package dependencies
Reverse dependencies
Overall the package has 14 reverse dependencies:
adehabitatHR, amt, DEPONS2R, m2b, move, segclust2d, sftrack, SiMRiv, spacetime, track2KBA, trackdf, trajectories, trip, wildlifeDI
Namespace
Overall the package has 94 exported objects. 94 are documented:
[.ltraj [<-.ltraj acfang.ltraj
TRUE TRUE TRUE
acfdist.ltraj as.ltraj bestpartmod
TRUE TRUE TRUE
bindltraj burst burst<-
TRUE TRUE TRUE
c.ltraj chooseseg cutltraj
TRUE TRUE TRUE
dchi dl findpath
TRUE TRUE TRUE
fpt gdltraj hbrown
TRUE TRUE TRUE
hist.ltraj id id<-
TRUE TRUE TRUE
indmove indmove.detail infolocs
TRUE TRUE TRUE
infolocs<- is.regular is.sd
TRUE TRUE TRUE
lavielle lavielle.default lavielle.ltraj
TRUE TRUE TRUE
ld ltraj2sldf ltraj2spdf
TRUE TRUE TRUE
meanfpt mindistkeep modpartltraj
TRUE TRUE TRUE
na.omit.ltraj NMs.CRW NMs.randomCRW
TRUE TRUE TRUE
NMs.randomCs NMs.randomShiftRotation NMs2NMm
TRUE TRUE TRUE
offsetdate partmod.ltraj pchi
TRUE TRUE TRUE
plot.fipati plot.ltraj plot.partltraj
TRUE TRUE TRUE
plot.resiti plotltr plotNAltraj
TRUE TRUE TRUE
print.lavielle print.ltraj print.modpartltraj
TRUE TRUE TRUE
print.NMm print.NMs print.partltraj
TRUE TRUE TRUE
print.resiti qchi qqchi
TRUE TRUE TRUE
qqchi.default qqchi.ltraj qqnorm.ltraj
TRUE TRUE TRUE
rasterize.ltraj rchi rec
TRUE TRUE TRUE
redisltraj removeinfo residenceTime
TRUE TRUE TRUE
runsNAltraj sd2df set.limits
TRUE TRUE TRUE
setNA sett0 simm.bb
TRUE TRUE TRUE
simm.brown simm.crw simm.levy
TRUE TRUE TRUE
simm.mba simm.mou sliwinltr
TRUE TRUE TRUE
subsample summary.ltraj summaryNAltraj
TRUE TRUE TRUE
testang.ltraj testdist.ltraj testNM
TRUE TRUE TRUE
trajdyn typeII2typeI varlogfpt
TRUE TRUE TRUE
wawotest wawotest.default wawotest.ltraj
TRUE TRUE TRUE
which.ltraj
TRUE Examples
There are 58 help pages with examples, from 58 (100.00 %).
NEWS
The package has NEWS file and it is current.
License
The package uses .
Installation environment
System Info
| Field | Value |
|---|---|
| Image | rhub/ref-image |
| OS | Ubuntu 24.04.1 LTS |
| Platform | x86_64-pc-linux-gnu |
| System | x86_64, linux-gnu |
| Execution Time | 2025-02-14 06:36:42 UTC |
System information. Table about the system used to check the package.
R Session Info
Information about the R environment and capabilities:
R version 4.4.2 (2024-10-31)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 24.04.1 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so; LAPACK version 3.12.0
locale:
[1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8
[4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8
[7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C
time zone: UTC
tzcode source: system (glibc)
attached base packages:
[1] tools stats graphics grDevices utils datasets methods
[8] base
loaded via a namespace (and not attached):
[1] riskreports_0.0.0.9003 compiler_4.4.2 fastmap_1.2.0
[4] cli_3.6.4 htmltools_0.5.8.1 yaml_2.3.10
[7] rmarkdown_2.29 knitr_1.49 jsonlite_1.8.9
[10] xfun_0.50 digest_0.6.37 rlang_1.1.5
[13] evaluate_1.0.3 Platform used:
OS.type file.sep dynlib.ext GUI endian pkgType path.sep
"unix" "/" ".so" "X11" "little" "source" ":"
r_arch
"" R’s capabilities:
jpeg png tiff tcltk X11 aqua
TRUE TRUE TRUE TRUE FALSE FALSE
http/ftp sockets libxml fifo cledit iconv
TRUE TRUE FALSE TRUE FALSE TRUE
NLS Rprof profmem cairo ICU long.double
TRUE TRUE TRUE TRUE TRUE TRUE
libcurl
TRUE External software:
zlib
"1.3"
bzlib
"1.0.8, 13-Jul-2019"
xz
"5.4.5"
libdeflate
"1.19"
PCRE
"10.42 2022-12-11"
ICU
"74.2"
TRE
"TRE 0.8.0 R_fixes (BSD)"
iconv
"glibc 2.39"
readline
"8.2"
BLAS
"/usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3" Graphics external software:
cairo cairoFT pango
"1.18.0" "" "1.52.1"
libpng jpeg libtiff
"1.6.43" "8.0" "LIBTIFF, Version 4.5.1" Numerical characteristics of the machine:
double.eps double.neg.eps double.xmin
2.220446e-16 1.110223e-16 2.225074e-308
double.xmax double.base double.digits
1.797693e+308 2.000000e+00 5.300000e+01
double.rounding double.guard double.ulp.digits
5.000000e+00 0.000000e+00 -5.200000e+01
double.neg.ulp.digits double.exponent double.min.exp
-5.300000e+01 1.100000e+01 -1.022000e+03
double.max.exp integer.max sizeof.long
1.024000e+03 2.147484e+09 8.000000e+00
sizeof.longlong sizeof.longdouble sizeof.pointer
8.000000e+00 1.600000e+01 8.000000e+00
sizeof.time_t longdouble.eps longdouble.neg.eps
8.000000e+00 1.084202e-19 5.421011e-20
longdouble.digits longdouble.rounding longdouble.guard
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longdouble.ulp.digits longdouble.neg.ulp.digits longdouble.exponent
-6.300000e+01 -6.400000e+01 1.500000e+01
longdouble.min.exp longdouble.max.exp
-1.638200e+04 1.638400e+04 Random number generation process:
[1] "Mersenne-Twister" "Inversion" "Rejection" Information about the environment
Environmental and options variables affect how package checks and software in it might behave. Here is the environmental variables when running this report
_R_CHECK_SYSTEM_CLOCK_
FALSE
ACCEPT_EULA Y
ACTIONS_RUNNER_ACTION_ARCHIVE_CACHE
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ANT_HOME /usr/share/ant
AZURE_EXTENSION_DIR /opt/az/azcliextensions
BOOTSTRAP_HASKELL_NONINTERACTIVE
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GITHUB_TRIGGERING_ACTOR
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HOME /home/runner
HOMEBREW_CLEANUP_PERIODIC_FULL_DAYS
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HOMEBREW_NO_AUTO_UPDATE
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LANG C.UTF-8
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LN_S ln -s
LOGGER_LOG_LEVEL DEBUG
MAKE make
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PERFLOG_LOCATION_SETTING
RUNNER_PERFLOG
PHARMAPKGS_EXCLUDED_METRICS
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PHARMAPKGS_LIMIT 500
PHARMAPKGS_PLATFORM ubuntu-22.04
PHARMAPKGS_R_VERSION 4.4
PHARMAPKGS_REMOTE_REPO
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PKGCACHE_HTTP_VERSION 2
PKGLOAD_PARENT_TEMPDIR
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POWERSHELL_DISTRIBUTION_CHANNEL
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PWD /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_BIN_PATH /opt/quarto/bin
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QUARTO_PROFILE
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R_PLATFORM x86_64-pc-linux-gnu
R_PRINTCMD /usr/bin/lpr
R_RD4PDF times,inconsolata,hyper
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TZ UTC
USER runner
VCPKG_INSTALLATION_ROOT
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XDG_CONFIG_HOME /home/runner/.config
XDG_RUNTIME_DIR /run/user/1001These are the options set to generate the report:
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$bitmapType
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$browser
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$callr.condition_handler_cli_message
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<bytecode: 0x55d279ee3910>
<environment: namespace:cli>
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$rl_word_breaks
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$rlang_trace_top_env
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$scipen
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$str$formatNum
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