Validation Report - ade4@1.7.22
Context
This report is fully automated and builds on rhub/ref-image image. Documents the installation of this package on an open source R environment, focusing on:
- Installation environment description
- Testing coverage
It is limited to assess whether unit tests and documentation are present and can execute without error. An assessment would be required that the tests and documentation are meaningful.
Package ade4
Metric based risk assessment
The following metrics are derived from the riskmetric R package.
| has_news | 0 |
| exported_namespace | 230 |
| has_vignettes | 0 |
| export_help | 230 |
| has_website | TRUE |
| has_maintainer | Aurélie Siberchicot aurelie.siberchicot@univ-lyon1.fr |
| bugs_status | subscript out of bounds |
| size_codebase | 20692 |
| has_bug_reports_url | 1 |
| downloads_1yr | 438921 |
| reverse_dependencies | 86 |
| has_examples | 0.989726 |
| dependencies | 11 |
| license | GPL (>= 2) |
Package general assessment: Coverage, check results, size, download the last year, reverse dependencies and number of dependencies.
Dependencies
Overall the package has these dependencies:
| package | type | |
|---|---|---|
| 1 | graphics | Imports |
| 2 | grDevices | Imports |
| 3 | methods | Imports |
| 4 | stats | Imports |
| 5 | utils | Imports |
| 6 | MASS | Imports |
| 7 | pixmap | Imports |
| 8 | sp | Imports |
| 9 | Rcpp | Imports |
| 10 | Rcpp | LinkingTo |
| 11 | RcppArmadillo | LinkingTo |
Package dependencies
Reverse dependencies
Overall the package has 86 reverse dependencies:
adductomicsR, ade4TkGUI, adegenet, adegraphics, adehabitatHR, adehabitatHS, adehabitatLT, adephylo, adespatial, adiv, ads, Autoplotprotein, BalanceCheck, berryFunctions, bikm1, bioregion, brainGraph, CAESAR.Suite, cati, clusterSim, corral, covRNA, dispRity, divent, DrBats, ecospat, ecostats, entropart, epimdr, epimdr2, explor, FactoClass, factoextra, FD, funrar, funspace, GDAtools, genoPlotR, glmmTMB, gSeg, gTests, gTestsMulti, Guerry, GUniFrac, hierfstat, hillR, iBBiG, kissDE, Laterality, LearnPCA, made4, memgene, metaprotr, mFD, mia, MiSPU, MorphoTools2, motifStack, multiblock, OGI, omicade4, packMBPLSDA, PBD, pctax, pez, phylobase, phyloseq, plotprotein, polysat, PopGenReport, poppr, ProcMod, revtools, rgTest, RVAideMemoire, SCGLR, Select, seqhandbook, seqinr, SPARTAAS, STEPCAM, symbolicDA, Thresher, treespace, virtualspecies, wallace
Namespace
Overall the package has 230 exported objects. 230 are documented:
acm.burt acm.disjonctif
TRUE TRUE
add.scatter add.scatter.eig
TRUE TRUE
adegraphicsLoaded amova
TRUE TRUE
apqe area.plot
TRUE TRUE
area2link area2poly
TRUE TRUE
as.dudi as.krandboot
TRUE TRUE
as.krandtest as.krandxval
TRUE TRUE
as.randboot as.randtest
TRUE TRUE
as.randxval as.taxo
TRUE TRUE
bca betweenvarCpp
TRUE TRUE
bicenter.wt bwca.dpcoa
TRUE TRUE
cailliez coinertia
TRUE TRUE
col.names col.names<-
TRUE TRUE
combine.4thcorner combine.randtest.rlq
TRUE TRUE
costatis costatis.randtest
TRUE TRUE
covfacwt covwt
TRUE TRUE
dagnelie.test disc
TRUE TRUE
discrimin discrimin.coa
TRUE TRUE
dist.binary dist.dudi
TRUE TRUE
dist.ktab dist.neig
TRUE TRUE
dist.prop dist.quant
TRUE TRUE
dist.taxo divc
TRUE TRUE
divcmax dotchart.phylog
TRUE TRUE
dotcircle dpcoa
TRUE TRUE
dudi.acm dudi.coa
TRUE TRUE
dudi.dec dudi.fca
TRUE TRUE
dudi.fpca dudi.hillsmith
TRUE TRUE
dudi.mix dudi.nsc
TRUE TRUE
dudi.pca dudi.pco
TRUE TRUE
dudi.type enum.phylog
TRUE TRUE
foucart fourthcorner
TRUE TRUE
fourthcorner.rlq fourthcorner2
TRUE TRUE
gearymoran gridrowcol
TRUE TRUE
haar2level hclust2phylog
TRUE TRUE
inerbetweenCpp inertia
TRUE TRUE
inertia.dudi is.dudi
TRUE TRUE
is.euclid is.ktab
TRUE TRUE
is.orthobasis kdist
TRUE TRUE
kdist.cor kdist2ktab
TRUE TRUE
kdisteuclid kplot
TRUE TRUE
kplotsepan.coa kplotX.mdpcoa
TRUE TRUE
ktab.data.frame ktab.list.df
TRUE TRUE
ktab.list.dudi ktab.match2ktabs
TRUE TRUE
ktab.within ldist.ktab
TRUE TRUE
lingoes loocv
TRUE TRUE
mantel.randtest mantel.rtest
TRUE TRUE
mantelkdist mbpcaiv
TRUE TRUE
mbpls mcoa
TRUE TRUE
mdpcoa meanfacwt
TRUE TRUE
mfa mld
TRUE TRUE
mstree multispati
TRUE TRUE
multispati.randtest multispati.rtest
TRUE TRUE
nb2neig neig
TRUE TRUE
neig2mat neig2nb
TRUE TRUE
newick2phylog niche
TRUE TRUE
niche.param nipals
TRUE TRUE
originality orthobasis.circ
TRUE TRUE
orthobasis.haar orthobasis.line
TRUE TRUE
orthobasis.mat orthobasis.neig
TRUE TRUE
p.adjust.4thcorner pcaiv
TRUE TRUE
pcaivortho pcoscaled
TRUE TRUE
phylog.extract phylog.permut
TRUE TRUE
PI2newick poly2area
TRUE TRUE
prep.binary prep.circular
TRUE TRUE
prep.fuzzy prep.fuzzy.var
TRUE TRUE
prep.mdpcoa procuste
TRUE TRUE
procuste.randtest procuste.rtest
TRUE TRUE
procusterandtestCpp pta
TRUE TRUE
quasieuclid radial.phylog
TRUE TRUE
randboot randtest
TRUE TRUE
reciprocal.coa reconst
TRUE TRUE
redo.dudi rlq
TRUE TRUE
rtest RV.randtest
TRUE TRUE
RV.rtest RVdist.randtest
TRUE TRUE
RVintra.randtest RVintrarandtestCpp
TRUE TRUE
RVkdist RVrandtestCpp
TRUE TRUE
s.arrow s.chull
TRUE TRUE
s.class s.corcircle
TRUE TRUE
s.distri s.hist
TRUE TRUE
s.image s.kde2d
TRUE TRUE
s.label s.logo
TRUE TRUE
s.match s.match.class
TRUE TRUE
s.multinom s.traject
TRUE TRUE
s.value scalefacwt
TRUE TRUE
scalewt scatter
TRUE TRUE
scatterutil.base scatterutil.chull
TRUE TRUE
scatterutil.convrot90 scatterutil.eigen
TRUE TRUE
scatterutil.ellipse scatterutil.eti
TRUE TRUE
scatterutil.eti.circ scatterutil.grid
TRUE TRUE
scatterutil.legend.bw.square scatterutil.legend.square.grey
TRUE TRUE
scatterutil.legendgris scatterutil.logo
TRUE TRUE
scatterutil.scaling scatterutil.sco
TRUE TRUE
scatterutil.star scatterutil.sub
TRUE TRUE
sco.boxplot sco.class
TRUE TRUE
sco.distri sco.gauss
TRUE TRUE
sco.label sco.match
TRUE TRUE
sco.quant score
TRUE TRUE
scores.neig sepan
TRUE TRUE
statico statico.krandtest
TRUE TRUE
statis supcol
TRUE TRUE
supdist suprow
TRUE TRUE
symbols.phylog tab.names
TRUE TRUE
tab.names<- table.cont
TRUE TRUE
table.dist table.paint
TRUE TRUE
table.phylog table.value
TRUE TRUE
taxo2phylog testdim
TRUE TRUE
testdiscriminCpp testertraceCpp
TRUE TRUE
testertracenubisCpp testertracenuCpp
TRUE TRUE
testinterCpp testmantelCpp
TRUE TRUE
triangle.biplot triangle.class
TRUE TRUE
triangle.plot uniquewt.df
TRUE TRUE
varfacwt variance.phylog
TRUE TRUE
varipart varwt
TRUE TRUE
wca withinpca
TRUE TRUE
witwit.coa witwitsepan
TRUE TRUE Examples
There are 289 help pages with examples, from 292 (98.97 %).
NEWS
The package has NEWS file and it is current.
License
The package uses .
Installation environment
System Info
| Field | Value |
|---|---|
| Image | rhub/ref-image |
| OS | Ubuntu 24.04.1 LTS |
| Platform | x86_64-pc-linux-gnu |
| System | x86_64, linux-gnu |
| Execution Time | 2025-02-14 06:36:20 UTC |
System information. Table about the system used to check the package.
R Session Info
Information about the R environment and capabilities:
R version 4.4.2 (2024-10-31)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 24.04.1 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so; LAPACK version 3.12.0
locale:
[1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8
[4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8
[7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C
time zone: UTC
tzcode source: system (glibc)
attached base packages:
[1] tools stats graphics grDevices utils datasets methods
[8] base
loaded via a namespace (and not attached):
[1] riskreports_0.0.0.9003 compiler_4.4.2 fastmap_1.2.0
[4] cli_3.6.4 htmltools_0.5.8.1 yaml_2.3.10
[7] rmarkdown_2.29 knitr_1.49 jsonlite_1.8.9
[10] xfun_0.50 digest_0.6.37 rlang_1.1.5
[13] evaluate_1.0.3 Platform used:
OS.type file.sep dynlib.ext GUI endian pkgType path.sep
"unix" "/" ".so" "X11" "little" "source" ":"
r_arch
"" R’s capabilities:
jpeg png tiff tcltk X11 aqua
TRUE TRUE TRUE TRUE FALSE FALSE
http/ftp sockets libxml fifo cledit iconv
TRUE TRUE FALSE TRUE FALSE TRUE
NLS Rprof profmem cairo ICU long.double
TRUE TRUE TRUE TRUE TRUE TRUE
libcurl
TRUE External software:
zlib
"1.3"
bzlib
"1.0.8, 13-Jul-2019"
xz
"5.4.5"
libdeflate
"1.19"
PCRE
"10.42 2022-12-11"
ICU
"74.2"
TRE
"TRE 0.8.0 R_fixes (BSD)"
iconv
"glibc 2.39"
readline
"8.2"
BLAS
"/usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3" Graphics external software:
cairo cairoFT pango
"1.18.0" "" "1.52.1"
libpng jpeg libtiff
"1.6.43" "8.0" "LIBTIFF, Version 4.5.1" Numerical characteristics of the machine:
double.eps double.neg.eps double.xmin
2.220446e-16 1.110223e-16 2.225074e-308
double.xmax double.base double.digits
1.797693e+308 2.000000e+00 5.300000e+01
double.rounding double.guard double.ulp.digits
5.000000e+00 0.000000e+00 -5.200000e+01
double.neg.ulp.digits double.exponent double.min.exp
-5.300000e+01 1.100000e+01 -1.022000e+03
double.max.exp integer.max sizeof.long
1.024000e+03 2.147484e+09 8.000000e+00
sizeof.longlong sizeof.longdouble sizeof.pointer
8.000000e+00 1.600000e+01 8.000000e+00
sizeof.time_t longdouble.eps longdouble.neg.eps
8.000000e+00 1.084202e-19 5.421011e-20
longdouble.digits longdouble.rounding longdouble.guard
6.400000e+01 5.000000e+00 0.000000e+00
longdouble.ulp.digits longdouble.neg.ulp.digits longdouble.exponent
-6.300000e+01 -6.400000e+01 1.500000e+01
longdouble.min.exp longdouble.max.exp
-1.638200e+04 1.638400e+04 Random number generation process:
[1] "Mersenne-Twister" "Inversion" "Rejection" Information about the environment
Environmental and options variables affect how package checks and software in it might behave. Here is the environmental variables when running this report
_R_CHECK_SYSTEM_CLOCK_
FALSE
ACCEPT_EULA Y
ACTIONS_RUNNER_ACTION_ARCHIVE_CACHE
/opt/actionarchivecache
AGENT_TOOLSDIRECTORY /opt/hostedtoolcache
ANDROID_HOME /usr/local/lib/android/sdk
ANDROID_NDK /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_HOME /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_LATEST_HOME
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ANDROID_NDK_ROOT /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_SDK_ROOT /usr/local/lib/android/sdk
ANT_HOME /usr/share/ant
AZURE_EXTENSION_DIR /opt/az/azcliextensions
BOOTSTRAP_HASKELL_NONINTERACTIVE
1
BUNDLE_EXT linux-amd64.deb
CHROME_BIN /usr/bin/google-chrome
CHROMEWEBDRIVER /usr/local/share/chromedriver-linux64
CI true
CONDA /usr/share/miniconda
DEBIAN_FRONTEND noninteractive
DENO_DOM_PLUGIN /opt/quarto/bin/tools/x86_64/deno_dom/libplugin.so
DENO_NO_UPDATE_CHECK 1
DENO_TLS_CA_STORE system,mozilla
DEPLOYMENT_BASEPATH /opt/runner
DOTNET_MULTILEVEL_LOOKUP
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DOTNET_NOLOGO 1
DOTNET_SKIP_FIRST_TIME_EXPERIENCE
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EDGEWEBDRIVER /usr/local/share/edge_driver
EDITOR vi
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GHCUP_INSTALL_BASE_PREFIX
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GITHUB_ACTION __run
GITHUB_ACTION_REF
GITHUB_ACTION_REPOSITORY
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GITHUB_ACTOR Gotfrid
GITHUB_ACTOR_ID 8464262
GITHUB_API_URL https://api.github.com
GITHUB_BASE_REF
GITHUB_ENV /home/runner/work/_temp/_runner_file_commands/set_env_f6c8d8cb-0607-4376-9ed1-89a505373e7d
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GITHUB_GRAPHQL_URL https://api.github.com/graphql
GITHUB_HEAD_REF
GITHUB_JOB main
GITHUB_OUTPUT /home/runner/work/_temp/_runner_file_commands/set_output_f6c8d8cb-0607-4376-9ed1-89a505373e7d
GITHUB_PATH /home/runner/work/_temp/_runner_file_commands/add_path_f6c8d8cb-0607-4376-9ed1-89a505373e7d
GITHUB_REF refs/heads/main
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GITHUB_REF_PROTECTED false
GITHUB_REF_TYPE branch
GITHUB_REPOSITORY pharmaR/pharmapkgs
GITHUB_REPOSITORY_ID 798326913
GITHUB_REPOSITORY_OWNER
pharmaR
GITHUB_REPOSITORY_OWNER_ID
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GITHUB_RETENTION_DAYS 90
GITHUB_RUN_ATTEMPT 1
GITHUB_RUN_ID 13323516711
GITHUB_RUN_NUMBER 86
GITHUB_SERVER_URL https://github.com
GITHUB_SHA d790b87bd807399b7640c7bca6ec67a96a6b839e
GITHUB_STATE /home/runner/work/_temp/_runner_file_commands/save_state_f6c8d8cb-0607-4376-9ed1-89a505373e7d
GITHUB_STEP_SUMMARY /home/runner/work/_temp/_runner_file_commands/step_summary_f6c8d8cb-0607-4376-9ed1-89a505373e7d
GITHUB_TRIGGERING_ACTOR
Gotfrid
GITHUB_WORKFLOW Update package repositories
GITHUB_WORKFLOW_REF pharmaR/pharmapkgs/.github/workflows/update-repos.yml@refs/heads/main
GITHUB_WORKFLOW_SHA d790b87bd807399b7640c7bca6ec67a96a6b839e
GITHUB_WORKSPACE /home/runner/work/pharmapkgs/pharmapkgs
GOROOT_1_21_X64 /opt/hostedtoolcache/go/1.21.13/x64
GOROOT_1_22_X64 /opt/hostedtoolcache/go/1.22.12/x64
GOROOT_1_23_X64 /opt/hostedtoolcache/go/1.23.6/x64
GRADLE_HOME /usr/share/gradle-8.12.1
HOME /home/runner
HOMEBREW_CLEANUP_PERIODIC_FULL_DAYS
3650
HOMEBREW_NO_AUTO_UPDATE
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ImageOS ubuntu24
ImageVersion 20250209.1.0
INVOCATION_ID 173b090202a445c984b291dd28076462
JAVA_HOME /usr/lib/jvm/temurin-17-jdk-amd64
JAVA_HOME_11_X64 /usr/lib/jvm/temurin-11-jdk-amd64
JAVA_HOME_17_X64 /usr/lib/jvm/temurin-17-jdk-amd64
JAVA_HOME_21_X64 /usr/lib/jvm/temurin-21-jdk-amd64
JAVA_HOME_8_X64 /usr/lib/jvm/temurin-8-jdk-amd64
JOURNAL_STREAM 8:7727
LANG C.UTF-8
LD_LIBRARY_PATH /opt/R/4.4.2/lib/R/lib:/usr/local/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/temurin-17-jdk-amd64/lib/server:/opt/R/4.4.2/lib/R/lib:/usr/local/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/temurin-17-jdk-amd64/lib/server
LN_S ln -s
LOGGER_LOG_LEVEL DEBUG
MAKE make
MEMORY_PRESSURE_WATCH /sys/fs/cgroup/system.slice/runner-provisioner.service/memory.pressure
MEMORY_PRESSURE_WRITE c29tZSAyMDAwMDAgMjAwMDAwMAA=
NOT_CRAN true
NVM_DIR /home/runner/.nvm
PAGER /usr/bin/pager
PATH /snap/bin:/home/runner/.local/bin:/opt/pipx_bin:/home/runner/.cargo/bin:/home/runner/.config/composer/vendor/bin:/usr/local/.ghcup/bin:/home/runner/.dotnet/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
PERFLOG_LOCATION_SETTING
RUNNER_PERFLOG
PHARMAPKGS_EXCLUDED_METRICS
assess_covr_coverage,assess_r_cmd_check
PHARMAPKGS_LIMIT 500
PHARMAPKGS_PLATFORM ubuntu-22.04
PHARMAPKGS_R_VERSION 4.4
PHARMAPKGS_REMOTE_REPO
https://cloud.r-project.org/
PIPX_BIN_DIR /opt/pipx_bin
PIPX_HOME /opt/pipx
PKGCACHE_HTTP_VERSION 2
PKGLOAD_PARENT_TEMPDIR
/tmp/RtmpBUYGbc
POWERSHELL_DISTRIBUTION_CHANNEL
GitHub-Actions-ubuntu24
PROCESSX_PS726d50c399b_1739514977
YES
PWD /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_BIN_PATH /opt/quarto/bin
QUARTO_DENO /opt/quarto/bin/tools/x86_64/deno
QUARTO_DOCUMENT_PATH /home/runner/work/pharmapkgs/pharmapkgs/inst/report
QUARTO_PROFILE
QUARTO_PROJECT_DIR /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_PROJECT_ROOT /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_ROOT /
QUARTO_SHARE_PATH /opt/quarto/share
R_ARCH
R_BROWSER xdg-open
R_BZIPCMD /usr/bin/bzip2
R_DOC_DIR /opt/R/4.4.2/lib/R/doc
R_GZIPCMD /usr/bin/gzip
R_HOME /opt/R/4.4.2/lib/R
R_INCLUDE_DIR /opt/R/4.4.2/lib/R/include
R_LIB_FOR_PAK /opt/R/4.4.2/lib/R/site-library
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R_LIBS_USER /home/runner/work/_temp/Library
R_PAPERSIZE letter
R_PAPERSIZE_USER letter
R_PDFVIEWER /usr/bin/xdg-open
R_PLATFORM x86_64-pc-linux-gnu
R_PRINTCMD /usr/bin/lpr
R_RD4PDF times,inconsolata,hyper
R_SESSION_TMPDIR /tmp/Rtmp8UgRN8
R_SHARE_DIR /opt/R/4.4.2/lib/R/share
R_STRIP_SHARED_LIB strip --strip-unneeded
R_STRIP_STATIC_LIB strip --strip-debug
R_TEXI2DVICMD /usr/bin/texi2dvi
R_UNZIPCMD /usr/bin/unzip
R_ZIPCMD /usr/bin/zip
RUNNER_ARCH X64
RUNNER_ENVIRONMENT github-hosted
RUNNER_NAME GitHub Actions 13
RUNNER_OS Linux
RUNNER_PERFLOG /home/runner/perflog
RUNNER_TEMP /home/runner/work/_temp
RUNNER_TOOL_CACHE /opt/hostedtoolcache
RUNNER_TRACKING_ID github_05609c14-ef8b-4640-9d49-0f5a08371745
RUNNER_USER runner
RUNNER_WORKSPACE /home/runner/work/pharmapkgs
SED /usr/bin/sed
SELENIUM_JAR_PATH /usr/share/java/selenium-server.jar
SGX_AESM_ADDR 1
SHLVL 1
STATS_D true
STATS_D_D true
STATS_D_TC true
STATS_EXT true
STATS_EXTP https://provjobdprod.z13.web.core.windows.net/settings/provjobdsettings-latest/provjobd.data
STATS_PIP false
STATS_RDCL true
STATS_TRP true
STATS_UE true
STATS_V3PS true
STATS_VMD true
STATS_VMFE true
SWIFT_PATH /usr/share/swift/usr/bin
SYSTEMD_EXEC_PID 831
TAR /usr/bin/tar
TZ UTC
USER runner
VCPKG_INSTALLATION_ROOT
/usr/local/share/vcpkg
XDG_CONFIG_HOME /home/runner/.config
XDG_RUNTIME_DIR /run/user/1001These are the options set to generate the report:
$add.smooth
[1] TRUE
$bitmapType
[1] "cairo"
$browser
[1] "xdg-open"
$browserNLdisabled
[1] FALSE
$callr.condition_handler_cli_message
function (msg)
{
custom_handler <- getOption("cli.default_handler")
if (is.function(custom_handler)) {
custom_handler(msg)
}
else {
cli_server_default(msg)
}
}
<bytecode: 0x556a4236b910>
<environment: namespace:cli>
$catch.script.errors
[1] FALSE
$CBoundsCheck
[1] FALSE
$check.bounds
[1] FALSE
$citation.bibtex.max
[1] 1
$continue
[1] "+ "
$contrasts
unordered ordered
"contr.treatment" "contr.poly"
$covr.record_tests
[1] TRUE
$defaultPackages
[1] "datasets" "utils" "grDevices" "graphics" "stats" "methods"
$demo.ask
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$deparse.cutoff
[1] 60
$device
function (width = 7, height = 7, ...)
{
grDevices::pdf(NULL, width, height, ...)
}
<bytecode: 0x556a434a3ea0>
<environment: namespace:knitr>
$device.ask.default
[1] FALSE
$digits
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$dvipscmd
[1] "dvips"
$echo
[1] FALSE
$editor
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$encoding
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$example.ask
[1] "default"
$expressions
[1] 5000
$help.search.types
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$help.try.all.packages
[1] FALSE
$htmltools.preserve.raw
[1] TRUE
$HTTPUserAgent
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$internet.info
[1] 2
$keep.parse.data
[1] TRUE
$keep.parse.data.pkgs
[1] FALSE
$keep.source
[1] FALSE
$keep.source.pkgs
[1] FALSE
$knitr.in.progress
[1] TRUE
$locatorBell
[1] TRUE
$mailer
[1] "mailto"
$matprod
[1] "default"
$max.contour.segments
[1] 25000
$max.print
[1] 99999
$menu.graphics
[1] TRUE
$na.action
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$Ncpus
[1] 1
$nwarnings
[1] 50
$OutDec
[1] "."
$pager
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$papersize
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$PCRE_limit_recursion
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$PCRE_study
[1] FALSE
$PCRE_use_JIT
[1] TRUE
$pdfviewer
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$pkgType
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$printcmd
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$prompt
[1] "> "
$repos
CRAN
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$rl_word_breaks
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$rlang_trace_top_env
<environment: R_GlobalEnv>
$scipen
[1] 0
$show.coef.Pvalues
[1] TRUE
$show.error.messages
[1] TRUE
$show.signif.stars
[1] TRUE
$showErrorCalls
[1] TRUE
$showNCalls
[1] 50
$showWarnCalls
[1] FALSE
$str
$str$strict.width
[1] "no"
$str$digits.d
[1] 3
$str$vec.len
[1] 4
$str$list.len
[1] 99
$str$deparse.lines
NULL
$str$drop.deparse.attr
[1] TRUE
$str$formatNum
function (x, ...)
format(x, trim = TRUE, drop0trailing = TRUE, ...)
<environment: 0x556a41843520>
$str.dendrogram.last
[1] "`"
$texi2dvi
[1] "/usr/bin/texi2dvi"
$tikzMetricsDictionary
[1] "validation_report_ade4_v1.7.22-tikzDictionary"
$timeout
[1] 60
$try.outFile
A connection with
description ""
class "file"
mode "w+b"
text "binary"
opened "opened"
can read "yes"
can write "yes"
$ts.eps
[1] 1e-05
$ts.S.compat
[1] FALSE
$unzip
[1] "/usr/bin/unzip"
$useFancyQuotes
[1] FALSE
$verbose
[1] FALSE
$warn
[1] 0
$warning.length
[1] 1000
$warnPartialMatchArgs
[1] FALSE
$warnPartialMatchAttr
[1] FALSE
$warnPartialMatchDollar
[1] FALSE
$width
[1] 80