Validation Report - DiagrammeR@1.0.11
Context
This report is fully automated and builds on rhub/ref-image image. Documents the installation of this package on an open source R environment, focusing on:
- Installation environment description
- Testing coverage
It is limited to assess whether unit tests and documentation are present and can execute without error. An assessment would be required that the tests and documentation are meaningful.
Package DiagrammeR
Metric based risk assessment
The following metrics are derived from the riskmetric R package.
| has_news | 1 |
| news_current | TRUE |
| exported_namespace | 241 |
| has_vignettes | 0 |
| export_help | 241 |
| has_website | TRUE |
| has_maintainer | Richard Iannone riannone@me.com |
| bugs_status | subscript out of bounds |
| has_source_control | https://github.com/rich-iannone/DiagrammeR |
| has_bug_reports_url | 1 |
| downloads_1yr | 410344 |
| reverse_dependencies | 130 |
| has_examples | 0.9959677 |
| dependencies | 18 |
| license | MIT + file LICENSE |
Package general assessment: Coverage, check results, size, download the last year, reverse dependencies and number of dependencies.
Dependencies
Overall the package has these dependencies:
| package | type | |
|---|---|---|
| 1 | dplyr (>= 1.0.7) | Imports |
| 2 | glue (>= 1.5.0) | Imports |
| 3 | htmltools (>= 0.5.2) | Imports |
| 4 | htmlwidgets (>= 1.5) | Imports |
| 5 | igraph (>= 1.4.0) | Imports |
| 6 | magrittr (>= 1.5) | Imports |
| 7 | purrr (>= 0.3.4) | Imports |
| 8 | RColorBrewer (>= 1.1-2) | Imports |
| 9 | readr (>= 2.1.1) | Imports |
| 10 | rlang (>= 1.1.0) | Imports |
| 11 | cli | Imports |
| 12 | rstudioapi (>= 0.7) | Imports |
| 13 | scales (>= 1.1) | Imports |
| 14 | stringr (>= 1.4) | Imports |
| 15 | tibble (>= 3.1) | Imports |
| 16 | tidyr (>= 1.1) | Imports |
| 17 | viridisLite (>= 0.4.2) | Imports |
| 18 | visNetwork (>= 2.1.0) | Imports |
Package dependencies
Reverse dependencies
Overall the package has 130 reverse dependencies:
actel, aides, AutoWMM, behaviorchange, bioCancer, BiocPkgTools, bpmnR, causact, causalHyperGraph, changepoints, CohortCharacteristics, CohortConstructor, cohorttools, CondCopulas, consort, consortr, constructive, criticalpath, critpath, csquares, data.tree, dendroNetwork, denim, distill, dm, dosearch, drf, epicmodel, ERDbuilder, escalation, FAIRmaterials, fishdata, gap, GE, genetic.algo.optimizeR, geogenr, GeRnika, GNET2, grainscape, greta, grf, grPipe, hablar, heuristicsmineR, holiglm, inlabru, inldata, integr, irboost, irg, irtrees, isotree, JAGStree, justifier, lavaanPlot, LearnVizLMM, m2b, maestro, mapping, markovchain, mlms, muir, multitool, netSEM, nullranges, ODT, oldr, OmicsMLRepoR, OmopViewer, oncomsm, optimall, pacta.multi.loanbook, PaRe, Path.Analysis, pedMermaid, petrinetR, PhenotypeR, piecewiseSEM, pillar, PKbioanalysis, pkgGraphR, planr, policytree, poolfstat, primer, PRISMA2020, prismadiagramR, processanimateR, processmapR, profile, psidread, psyverse, pTITAN2, public.ctn0094data, qlcData, radiant.model, Rage, randomForestSRC, RavenR, Rcwl, Rgff, robotoolbox, rock, rocTree, rolap, rolog, sbfc, sem, seminr, sewage, simmer.plot, simona, sits, slca, smiles, SpaDES.core, srppp, stratEst, tibble, TidyConsultant, trialr, ttgsea, umx, VAExprs, ViSEAGO, vtree, WARDEN, when, xgboost, xpose.xtras
Namespace
Overall the package has 241 exported objects. 240 are documented:
%>% add_balanced_tree
FALSE TRUE
add_cycle add_edge
TRUE TRUE
add_edge_clone add_edge_df
TRUE TRUE
add_edges_from_table add_edges_w_string
TRUE TRUE
add_forward_edges_ws add_full_graph
TRUE TRUE
add_global_graph_attrs add_gnm_graph
TRUE TRUE
add_gnp_graph add_graph_action
TRUE TRUE
add_graph_to_graph_series add_grid_2d
TRUE TRUE
add_grid_3d add_growing_graph
TRUE TRUE
add_islands_graph add_mathjax
TRUE TRUE
add_n_node_clones add_n_nodes
TRUE TRUE
add_n_nodes_ws add_node
TRUE TRUE
add_node_clones_ws add_node_df
TRUE TRUE
add_nodes_from_df_cols add_nodes_from_table
TRUE TRUE
add_pa_graph add_path
TRUE TRUE
add_prism add_reverse_edges_ws
TRUE TRUE
add_smallworld_graph add_star
TRUE TRUE
clear_selection colorize_edge_attrs
TRUE TRUE
colorize_node_attrs combine_edfs
TRUE TRUE
combine_graphs combine_ndfs
TRUE TRUE
copy_edge_attrs copy_node_attrs
TRUE TRUE
count_asymmetric_node_pairs count_automorphisms
TRUE TRUE
count_edges count_graphs_in_graph_series
TRUE TRUE
count_loop_edges count_mutual_node_pairs
TRUE TRUE
count_nodes count_s_connected_cmpts
TRUE TRUE
count_unconnected_node_pairs count_unconnected_nodes
TRUE TRUE
count_w_connected_cmpts create_edge_df
TRUE TRUE
create_graph create_graph_series
TRUE TRUE
create_node_df delete_cache
TRUE TRUE
delete_edge delete_edges_ws
TRUE TRUE
delete_global_graph_attrs delete_graph_actions
TRUE TRUE
delete_loop_edges_ws delete_node
TRUE TRUE
delete_nodes_ws deselect_edges
TRUE TRUE
deselect_nodes DiagrammeR
TRUE TRUE
DiagrammeROutput display_metagraph
TRUE TRUE
do_bfs do_dfs
TRUE TRUE
drop_edge_attrs drop_node_attrs
TRUE TRUE
edge_aes edge_data
TRUE TRUE
export_csv export_graph
TRUE TRUE
filter_graph_series from_adj_matrix
TRUE TRUE
from_igraph fully_connect_nodes_ws
TRUE TRUE
fully_disconnect_nodes_ws generate_dot
TRUE TRUE
get_adhesion get_agg_degree_in
TRUE TRUE
get_agg_degree_out get_agg_degree_total
TRUE TRUE
get_all_connected_nodes get_alpha_centrality
TRUE TRUE
get_articulation_points get_authority_centrality
TRUE TRUE
get_betweenness get_cache
TRUE TRUE
get_closeness get_closeness_vitality
TRUE TRUE
get_cmty_edge_btwns get_cmty_fast_greedy
TRUE TRUE
get_cmty_l_eigenvec get_cmty_louvain
TRUE TRUE
get_cmty_walktrap get_common_nbrs
TRUE TRUE
get_coreness get_degree_distribution
TRUE TRUE
get_degree_histogram get_degree_in
TRUE TRUE
get_degree_out get_degree_total
TRUE TRUE
get_dice_similarity get_eccentricity
TRUE TRUE
get_edge_attrs get_edge_attrs_ws
TRUE TRUE
get_edge_count_w_multiedge get_edge_df
TRUE TRUE
get_edge_df_ws get_edge_ids
TRUE TRUE
get_edge_info get_edges
TRUE TRUE
get_eigen_centrality get_girth
TRUE TRUE
get_global_graph_attr_info get_graph_actions
TRUE TRUE
get_graph_from_graph_series get_graph_info
TRUE TRUE
get_graph_log get_graph_name
TRUE TRUE
get_graph_series_info get_graph_time
TRUE TRUE
get_jaccard_similarity get_last_edges_created
TRUE TRUE
get_last_nodes_created get_leverage_centrality
TRUE TRUE
get_max_eccentricity get_mean_distance
TRUE TRUE
get_min_cut_between get_min_eccentricity
TRUE TRUE
get_multiedge_count get_nbrs
TRUE TRUE
get_node_attrs get_node_attrs_ws
TRUE TRUE
get_node_df get_node_df_ws
TRUE TRUE
get_node_ids get_node_info
TRUE TRUE
get_non_nbrs get_pagerank
TRUE TRUE
get_paths get_periphery
TRUE TRUE
get_predecessors get_radiality
TRUE TRUE
get_reciprocity get_s_connected_cmpts
TRUE TRUE
get_selection get_similar_nbrs
TRUE TRUE
get_successors get_w_connected_cmpts
TRUE TRUE
grViz grVizOutput
TRUE TRUE
import_graph invert_selection
TRUE TRUE
is_edge_loop is_edge_multiple
TRUE TRUE
is_edge_mutual is_edge_present
TRUE TRUE
is_graph_connected is_graph_dag
TRUE TRUE
is_graph_directed is_graph_empty
TRUE TRUE
is_graph_simple is_graph_undirected
TRUE TRUE
is_graph_weighted is_node_present
TRUE TRUE
is_property_graph join_edge_attrs
TRUE TRUE
join_node_attrs layout_nodes_w_string
TRUE TRUE
mermaid mutate_edge_attrs
TRUE TRUE
mutate_edge_attrs_ws mutate_node_attrs
TRUE TRUE
mutate_node_attrs_ws node_aes
TRUE TRUE
node_data nudge_node_positions_ws
TRUE TRUE
open_graph recode_edge_attrs
TRUE TRUE
recode_node_attrs remove_graph_from_graph_series
TRUE TRUE
rename_edge_attrs rename_node_attrs
TRUE TRUE
render_graph render_graph_from_graph_series
TRUE TRUE
renderDiagrammeR renderGrViz
TRUE TRUE
reorder_graph_actions replace_in_spec
TRUE TRUE
rescale_edge_attrs rescale_node_attrs
TRUE TRUE
rev_edge_dir rev_edge_dir_ws
TRUE TRUE
save_graph select_edges
TRUE TRUE
select_edges_by_edge_id select_edges_by_node_id
TRUE TRUE
select_last_edges_created select_last_nodes_created
TRUE TRUE
select_nodes select_nodes_by_degree
TRUE TRUE
select_nodes_by_id select_nodes_in_neighborhood
TRUE TRUE
set_cache set_edge_attr_to_display
TRUE TRUE
set_edge_attrs set_edge_attrs_ws
TRUE TRUE
set_graph_directed set_graph_name
TRUE TRUE
set_graph_time set_graph_undirected
TRUE TRUE
set_node_attr_to_display set_node_attr_w_fcn
TRUE TRUE
set_node_attrs set_node_attrs_ws
TRUE TRUE
set_node_position to_igraph
TRUE TRUE
transform_to_complement_graph transform_to_min_spanning_tree
TRUE TRUE
transform_to_subgraph_ws trav_both
TRUE TRUE
trav_both_edge trav_in
TRUE TRUE
trav_in_edge trav_in_node
TRUE TRUE
trav_in_until trav_out
TRUE TRUE
trav_out_edge trav_out_node
TRUE TRUE
trav_out_until trav_reverse_edge
TRUE TRUE
trigger_graph_actions visnetwork
TRUE TRUE
x11_hex
TRUE Examples
There are 247 help pages with examples, from 248 (99.60 %).
NEWS
The package has NEWS file and it is current.
License
The package uses .
Installation environment
System Info
| Field | Value |
|---|---|
| Image | rhub/ref-image |
| OS | Ubuntu 24.04.1 LTS |
| Platform | x86_64-pc-linux-gnu |
| System | x86_64, linux-gnu |
| Execution Time | 2025-02-18 03:58:35 UTC |
System information. Table about the system used to check the package.
R Session Info
Information about the R environment and capabilities:
R version 4.4.2 (2024-10-31)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 24.04.1 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so; LAPACK version 3.12.0
locale:
[1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8
[4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8
[7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C
time zone: UTC
tzcode source: system (glibc)
attached base packages:
[1] tools stats graphics grDevices utils datasets methods
[8] base
loaded via a namespace (and not attached):
[1] riskreports_0.0.0.9003 compiler_4.4.2 fastmap_1.2.0
[4] cli_3.6.4 htmltools_0.5.8.1 yaml_2.3.10
[7] rmarkdown_2.29 knitr_1.49 jsonlite_1.8.9
[10] xfun_0.50 digest_0.6.37 rlang_1.1.5
[13] evaluate_1.0.3 Platform used:
OS.type file.sep dynlib.ext GUI endian pkgType path.sep
"unix" "/" ".so" "X11" "little" "source" ":"
r_arch
"" R’s capabilities:
jpeg png tiff tcltk X11 aqua
TRUE TRUE TRUE TRUE FALSE FALSE
http/ftp sockets libxml fifo cledit iconv
TRUE TRUE FALSE TRUE FALSE TRUE
NLS Rprof profmem cairo ICU long.double
TRUE TRUE TRUE TRUE TRUE TRUE
libcurl
TRUE External software:
zlib
"1.3"
bzlib
"1.0.8, 13-Jul-2019"
xz
"5.4.5"
libdeflate
"1.19"
PCRE
"10.42 2022-12-11"
ICU
"74.2"
TRE
"TRE 0.8.0 R_fixes (BSD)"
iconv
"glibc 2.39"
readline
"8.2"
BLAS
"/usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3" Graphics external software:
cairo cairoFT pango
"1.18.0" "" "1.52.1"
libpng jpeg libtiff
"1.6.43" "8.0" "LIBTIFF, Version 4.5.1" Numerical characteristics of the machine:
double.eps double.neg.eps double.xmin
2.220446e-16 1.110223e-16 2.225074e-308
double.xmax double.base double.digits
1.797693e+308 2.000000e+00 5.300000e+01
double.rounding double.guard double.ulp.digits
5.000000e+00 0.000000e+00 -5.200000e+01
double.neg.ulp.digits double.exponent double.min.exp
-5.300000e+01 1.100000e+01 -1.022000e+03
double.max.exp integer.max sizeof.long
1.024000e+03 2.147484e+09 8.000000e+00
sizeof.longlong sizeof.longdouble sizeof.pointer
8.000000e+00 1.600000e+01 8.000000e+00
sizeof.time_t longdouble.eps longdouble.neg.eps
8.000000e+00 1.084202e-19 5.421011e-20
longdouble.digits longdouble.rounding longdouble.guard
6.400000e+01 5.000000e+00 0.000000e+00
longdouble.ulp.digits longdouble.neg.ulp.digits longdouble.exponent
-6.300000e+01 -6.400000e+01 1.500000e+01
longdouble.min.exp longdouble.max.exp
-1.638200e+04 1.638400e+04 Random number generation process:
[1] "Mersenne-Twister" "Inversion" "Rejection" Information about the environment
Environmental and options variables affect how package checks and software in it might behave. Here is the environmental variables when running this report
_R_CHECK_SYSTEM_CLOCK_
FALSE
ACCEPT_EULA Y
ACTIONS_RUNNER_ACTION_ARCHIVE_CACHE
/opt/actionarchivecache
AGENT_TOOLSDIRECTORY /opt/hostedtoolcache
ANDROID_HOME /usr/local/lib/android/sdk
ANDROID_NDK /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_HOME /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_LATEST_HOME
/usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_ROOT /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_SDK_ROOT /usr/local/lib/android/sdk
ANT_HOME /usr/share/ant
AZURE_EXTENSION_DIR /opt/az/azcliextensions
BOOTSTRAP_HASKELL_NONINTERACTIVE
1
BUNDLE_EXT linux-amd64.deb
CHROME_BIN /usr/bin/google-chrome
CHROMEWEBDRIVER /usr/local/share/chromedriver-linux64
CI true
CONDA /usr/share/miniconda
DEBIAN_FRONTEND noninteractive
DENO_DOM_PLUGIN /opt/quarto/bin/tools/x86_64/deno_dom/libplugin.so
DENO_NO_UPDATE_CHECK 1
DENO_TLS_CA_STORE system,mozilla
DEPLOYMENT_BASEPATH /opt/runner
DOTNET_MULTILEVEL_LOOKUP
0
DOTNET_NOLOGO 1
DOTNET_SKIP_FIRST_TIME_EXPERIENCE
1
EDGEWEBDRIVER /usr/local/share/edge_driver
EDITOR vi
GECKOWEBDRIVER /usr/local/share/gecko_driver
GHCUP_INSTALL_BASE_PREFIX
/usr/local
GITHUB_ACTION __run
GITHUB_ACTION_REF
GITHUB_ACTION_REPOSITORY
GITHUB_ACTIONS true
GITHUB_ACTOR llrs-roche
GITHUB_ACTOR_ID 185338939
GITHUB_API_URL https://api.github.com
GITHUB_BASE_REF
GITHUB_ENV /home/runner/work/_temp/_runner_file_commands/set_env_b4db8720-2381-4f5c-84c9-546b4603e3d5
GITHUB_EVENT_NAME schedule
GITHUB_EVENT_PATH /home/runner/work/_temp/_github_workflow/event.json
GITHUB_GRAPHQL_URL https://api.github.com/graphql
GITHUB_HEAD_REF
GITHUB_JOB main
GITHUB_OUTPUT /home/runner/work/_temp/_runner_file_commands/set_output_b4db8720-2381-4f5c-84c9-546b4603e3d5
GITHUB_PATH /home/runner/work/_temp/_runner_file_commands/add_path_b4db8720-2381-4f5c-84c9-546b4603e3d5
GITHUB_REF refs/heads/main
GITHUB_REF_NAME main
GITHUB_REF_PROTECTED false
GITHUB_REF_TYPE branch
GITHUB_REPOSITORY pharmaR/pharmapkgs
GITHUB_REPOSITORY_ID 798326913
GITHUB_REPOSITORY_OWNER
pharmaR
GITHUB_REPOSITORY_OWNER_ID
42115094
GITHUB_RETENTION_DAYS 90
GITHUB_RUN_ATTEMPT 1
GITHUB_RUN_ID 13382492418
GITHUB_RUN_NUMBER 95
GITHUB_SERVER_URL https://github.com
GITHUB_SHA 157fff498035c254c88cbf9e2cfd3aeb384ab8f5
GITHUB_STATE /home/runner/work/_temp/_runner_file_commands/save_state_b4db8720-2381-4f5c-84c9-546b4603e3d5
GITHUB_STEP_SUMMARY /home/runner/work/_temp/_runner_file_commands/step_summary_b4db8720-2381-4f5c-84c9-546b4603e3d5
GITHUB_TRIGGERING_ACTOR
llrs-roche
GITHUB_WORKFLOW Update package repositories
GITHUB_WORKFLOW_REF pharmaR/pharmapkgs/.github/workflows/update-repos.yml@refs/heads/main
GITHUB_WORKFLOW_SHA 157fff498035c254c88cbf9e2cfd3aeb384ab8f5
GITHUB_WORKSPACE /home/runner/work/pharmapkgs/pharmapkgs
GOROOT_1_21_X64 /opt/hostedtoolcache/go/1.21.13/x64
GOROOT_1_22_X64 /opt/hostedtoolcache/go/1.22.12/x64
GOROOT_1_23_X64 /opt/hostedtoolcache/go/1.23.6/x64
GRADLE_HOME /usr/share/gradle-8.12.1
HOME /home/runner
HOMEBREW_CLEANUP_PERIODIC_FULL_DAYS
3650
HOMEBREW_NO_AUTO_UPDATE
1
ImageOS ubuntu24
ImageVersion 20250209.1.0
INVOCATION_ID bc1187a89ae54556a37eda746d0322c1
JAVA_HOME /usr/lib/jvm/temurin-17-jdk-amd64
JAVA_HOME_11_X64 /usr/lib/jvm/temurin-11-jdk-amd64
JAVA_HOME_17_X64 /usr/lib/jvm/temurin-17-jdk-amd64
JAVA_HOME_21_X64 /usr/lib/jvm/temurin-21-jdk-amd64
JAVA_HOME_8_X64 /usr/lib/jvm/temurin-8-jdk-amd64
JOURNAL_STREAM 8:8324
LANG C.UTF-8
LD_LIBRARY_PATH /opt/R/4.4.2/lib/R/lib:/usr/local/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/temurin-17-jdk-amd64/lib/server:/opt/R/4.4.2/lib/R/lib:/usr/local/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/temurin-17-jdk-amd64/lib/server
LN_S ln -s
LOGGER_LOG_LEVEL DEBUG
MAKE make
MEMORY_PRESSURE_WATCH /sys/fs/cgroup/system.slice/runner-provisioner.service/memory.pressure
MEMORY_PRESSURE_WRITE c29tZSAyMDAwMDAgMjAwMDAwMAA=
NOT_CRAN true
NVM_DIR /home/runner/.nvm
PAGER /usr/bin/pager
PATH /snap/bin:/home/runner/.local/bin:/opt/pipx_bin:/home/runner/.cargo/bin:/home/runner/.config/composer/vendor/bin:/usr/local/.ghcup/bin:/home/runner/.dotnet/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
PERFLOG_LOCATION_SETTING
RUNNER_PERFLOG
PHARMAPKGS_EXCLUDED_METRICS
assess_covr_coverage,assess_r_cmd_check
PHARMAPKGS_LIMIT 1000
PHARMAPKGS_PLATFORM ubuntu-22.04
PHARMAPKGS_R_VERSION 4.4
PHARMAPKGS_REMOTE_REPO
https://cloud.r-project.org/
PIPX_BIN_DIR /opt/pipx_bin
PIPX_HOME /opt/pipx
PKGCACHE_HTTP_VERSION 2
PKGLOAD_PARENT_TEMPDIR
/tmp/RtmpqWpBI2
POWERSHELL_DISTRIBUTION_CHANNEL
GitHub-Actions-ubuntu24
PROCESSX_PS1bb4436fa346_1739851109
YES
PWD /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_BIN_PATH /opt/quarto/bin
QUARTO_DENO /opt/quarto/bin/tools/x86_64/deno
QUARTO_DOCUMENT_PATH /home/runner/work/pharmapkgs/pharmapkgs/inst/report
QUARTO_PROFILE
QUARTO_PROJECT_DIR /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_PROJECT_ROOT /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_ROOT /
QUARTO_SHARE_PATH /opt/quarto/share
R_ARCH
R_BROWSER xdg-open
R_BZIPCMD /usr/bin/bzip2
R_DOC_DIR /opt/R/4.4.2/lib/R/doc
R_GZIPCMD /usr/bin/gzip
R_HOME /opt/R/4.4.2/lib/R
R_INCLUDE_DIR /opt/R/4.4.2/lib/R/include
R_LIB_FOR_PAK /opt/R/4.4.2/lib/R/site-library
R_LIBS_SITE /opt/R/4.4.2/lib/R/site-library
R_LIBS_USER /home/runner/work/_temp/Library
R_PAPERSIZE letter
R_PAPERSIZE_USER letter
R_PDFVIEWER /usr/bin/xdg-open
R_PLATFORM x86_64-pc-linux-gnu
R_PRINTCMD /usr/bin/lpr
R_RD4PDF times,inconsolata,hyper
R_SESSION_TMPDIR /tmp/RtmpyRD5bR
R_SHARE_DIR /opt/R/4.4.2/lib/R/share
R_STRIP_SHARED_LIB strip --strip-unneeded
R_STRIP_STATIC_LIB strip --strip-debug
R_TEXI2DVICMD /usr/bin/texi2dvi
R_UNZIPCMD /usr/bin/unzip
R_ZIPCMD /usr/bin/zip
RUNNER_ARCH X64
RUNNER_ENVIRONMENT github-hosted
RUNNER_NAME GitHub Actions 17
RUNNER_OS Linux
RUNNER_PERFLOG /home/runner/perflog
RUNNER_TEMP /home/runner/work/_temp
RUNNER_TOOL_CACHE /opt/hostedtoolcache
RUNNER_TRACKING_ID github_c8a03d70-50b4-4e41-a95e-f8c1a5765170
RUNNER_USER runner
RUNNER_WORKSPACE /home/runner/work/pharmapkgs
SED /usr/bin/sed
SELENIUM_JAR_PATH /usr/share/java/selenium-server.jar
SGX_AESM_ADDR 1
SHLVL 1
STATS_D true
STATS_D_D true
STATS_D_TC true
STATS_EXT true
STATS_EXTP https://provjobdprod.z13.web.core.windows.net/settings/provjobdsettings-latest/provjobd.data
STATS_PIP false
STATS_RDCL true
STATS_TRP true
STATS_UE true
STATS_V3PS true
STATS_VMD true
STATS_VMFE true
SWIFT_PATH /usr/share/swift/usr/bin
SYSTEMD_EXEC_PID 830
TAR /usr/bin/tar
TZ UTC
USER runner
VCPKG_INSTALLATION_ROOT
/usr/local/share/vcpkg
XDG_CONFIG_HOME /home/runner/.config
XDG_RUNTIME_DIR /run/user/1001These are the options set to generate the report:
$add.smooth
[1] TRUE
$bitmapType
[1] "cairo"
$browser
[1] "xdg-open"
$browserNLdisabled
[1] FALSE
$callr.condition_handler_cli_message
function (msg)
{
custom_handler <- getOption("cli.default_handler")
if (is.function(custom_handler)) {
custom_handler(msg)
}
else {
cli_server_default(msg)
}
}
<bytecode: 0x55c7596ed910>
<environment: namespace:cli>
$catch.script.errors
[1] FALSE
$CBoundsCheck
[1] FALSE
$check.bounds
[1] FALSE
$citation.bibtex.max
[1] 1
$continue
[1] "+ "
$contrasts
unordered ordered
"contr.treatment" "contr.poly"
$covr.record_tests
[1] TRUE
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[1] "datasets" "utils" "grDevices" "graphics" "stats" "methods"
$demo.ask
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$deparse.cutoff
[1] 60
$device
function (width = 7, height = 7, ...)
{
grDevices::pdf(NULL, width, height, ...)
}
<bytecode: 0x55c758da68c0>
<environment: namespace:knitr>
$device.ask.default
[1] FALSE
$digits
[1] 7
$dvipscmd
[1] "dvips"
$echo
[1] FALSE
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[1] "vi"
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[1] "native.enc"
$example.ask
[1] "default"
$expressions
[1] 5000
$help.search.types
[1] "vignette" "demo" "help"
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[1] FALSE
$htmltools.preserve.raw
[1] TRUE
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[1] 2
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[1] TRUE
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[1] FALSE
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[1] FALSE
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[1] FALSE
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[1] TRUE
$locatorBell
[1] TRUE
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[1] "mailto"
$matprod
[1] "default"
$max.contour.segments
[1] 25000
$max.print
[1] 99999
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[1] TRUE
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[1] 1
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[1] 50
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[1] TRUE
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[1] "/usr/bin/lpr"
$prompt
[1] "> "
$repos
CRAN
"https://cran.rstudio.com"
$rl_word_breaks
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$rlang_trace_top_env
<environment: R_GlobalEnv>
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[1] 0
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[1] TRUE
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[1] TRUE
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[1] TRUE
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[1] TRUE
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[1] 50
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[1] FALSE
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$str$strict.width
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$str$list.len
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NULL
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function (x, ...)
format(x, trim = TRUE, drop0trailing = TRUE, ...)
<environment: 0x55c758bc5520>
$str.dendrogram.last
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[1] "/usr/bin/texi2dvi"
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$try.outFile
A connection with
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mode "w+b"
text "binary"
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can read "yes"
can write "yes"
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[1] 1e-05
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[1] FALSE
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[1] FALSE
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