Validation Report - DescTools@0.99.59
Context
This report is fully automated and builds on rhub/ref-image image. Documents the installation of this package on an open source R environment, focusing on:
- Installation environment description
- Testing coverage
It is limited to assess whether unit tests and documentation are present and can execute without error. An assessment would be required that the tests and documentation are meaningful.
Package DescTools
Metric based risk assessment
The following metrics are derived from the riskmetric R package.
| has_news | 0 |
| exported_namespace | 624 |
| has_vignettes | 9 |
| export_help | 624 |
| has_website | TRUE |
| has_maintainer | Andri Signorell andri@signorell.net |
| bugs_status | subscript out of bounds |
| has_source_control | https://github.com/AndriSignorell/DescTools/ |
| has_bug_reports_url | 1 |
| downloads_1yr | 822234 |
| reverse_dependencies | 98 |
| has_examples | 1 |
| dependencies | 21 |
| license | GPL (>= 2) |
Package general assessment: Coverage, check results, size, download the last year, reverse dependencies and number of dependencies.
Dependencies
Overall the package has these dependencies:
| package | type | |
|---|---|---|
| 1 | base | Depends |
| 2 | stats | Depends |
| 3 | graphics | Imports |
| 4 | grDevices | Imports |
| 5 | methods | Imports |
| 6 | MASS | Imports |
| 7 | utils | Imports |
| 8 | boot | Imports |
| 9 | mvtnorm | Imports |
| 10 | expm | Imports |
| 11 | Rcpp (>= 0.12.10) | Imports |
| 12 | rstudioapi | Imports |
| 13 | Exact | Imports |
| 14 | gld | Imports |
| 15 | data.table | Imports |
| 16 | readxl | Imports |
| 17 | haven | Imports |
| 18 | httr | Imports |
| 19 | withr | Imports |
| 20 | cli | Imports |
| 21 | Rcpp | LinkingTo |
Package dependencies
Reverse dependencies
Overall the package has 98 reverse dependencies:
afdx, ANCOMBC, ANOVAShiny, ANOVAShiny2, AntibodyTiters, ARTool, atable, bfsMaps, bullseye, CAESAR.Suite, catfun, CGPfunctions, ClusTCR2, covalchemy, cryptography, dad, DanielBiostatistics10th, DescrTab2, DescToolsAddIns, DGEAR, drugprepr, DynForest, Ecfun, epifitter, EQUALrepeat, EQUALSTATS, FRESA.CAD, FSA, FunChisq, geosimilarity, gerbil, giniCI, giniVarCI, gmGeostats, GNOSIS, gosset, gpuMagic, HLAtools, iasva, IFAA, ILoReg, InteRD, jack, LorMe, maicplus, MAnorm2, matRiks, mcradds, metalite.ae, meteo, miceRanger, mlmts, ModTools, morphomap, mrbayes, MRMCbinary, MUS, ndi, negligible, nmrrr, npcurePK, parTimeROC, pbANOVA, pointRes, popstudy, ProAE, qspray, rcompanion, retrofit, RGMM, rifi, rifiComparative, robin, RobRegression, rties, sageR, samplesizeCMH, SARC, SCOPE, SEIRfansy, Semblance, sendigR, sevenbridges2, SGCP, smvgraph, SSHAARP, ssMRCD, tabxplor, tidyrules, TipDatingBeast, Toothnroll, transx, tspredit, vannstats, vvdoctor, WaverideR, wrappedtools, xgxr
Namespace
Overall the package has 624 exported objects. 607 are documented:
%::% %:% %()%
FALSE FALSE FALSE
%(]% %)(% %)[%
FALSE FALSE FALSE
%[)% %[]% %](%
FALSE FALSE FALSE
%][% %^% %c%
FALSE FALSE FALSE
%like any% %like% %nin%
FALSE FALSE FALSE
%overlaps% ABCCoords Abind
FALSE TRUE TRUE
Abstract AddMonths Agree
TRUE TRUE TRUE
AllDuplicated AllIdentical AndersonDarlingTest
TRUE TRUE TRUE
aovlDetails aovlErrorTerms Append
TRUE TRUE TRUE
AppendRowNames as.CDateFmt as.fmt
TRUE TRUE TRUE
as.matrix.xtabs as.ym AscToChar
TRUE TRUE TRUE
Asp Assocs Atkinson
TRUE TRUE TRUE
AUC AxisBreak axTicks.Date
TRUE TRUE TRUE
axTicks.POSIXct BarnardTest BartelsRankTest
TRUE TRUE TRUE
BarText Bg BhapkarTest
TRUE TRUE TRUE
BinomCI BinomCIn BinomDiffCI
TRUE TRUE TRUE
BinomRatioCI BinToDec BinTree
FALSE TRUE TRUE
BlankIfNA BootCI BoxCox
TRUE TRUE TRUE
BoxCoxInv BoxCoxLambda BoxedText
TRUE TRUE TRUE
BreslowDayTest BreuschGodfreyTest BrierScore
TRUE TRUE TRUE
BrierScoreCI BrierScoreCI BubbleLegend
TRUE TRUE TRUE
Canvas CartToPol CartToSph
TRUE TRUE TRUE
CatTable CCC CharToAsc
TRUE TRUE TRUE
Clockwise Closest CmToPts
TRUE TRUE TRUE
CmykToCmy CmykToRgb CmyToCmyk
TRUE TRUE TRUE
Coalesce CochranArmitageTest CochranQTest
TRUE TRUE TRUE
CoefVar CoefVarCI CohenD
TRUE TRUE TRUE
CohenKappa CollapseTable ColorLegend
TRUE TRUE TRUE
ColToGray ColToGrey ColToHex
TRUE TRUE TRUE
ColToHsv ColToOpaque ColToRgb
TRUE TRUE TRUE
ColumnWrap CombN CombPairs
TRUE TRUE TRUE
CombSet CompleteColumns ConDisPairs
TRUE TRUE TRUE
Conf ConnLines ConoverTest
TRUE TRUE TRUE
ContCoef Contrasts ConvUnit
TRUE TRUE TRUE
Cor CorCI CorPart
TRUE TRUE TRUE
CorPolychor CountCompCases CountWorkDays
TRUE TRUE TRUE
CourseData Cov CramerV
TRUE TRUE TRUE
CramerVonMisesTest createCOMReference CronbachAlpha
TRUE TRUE TRUE
Cross CrossN Cstat
TRUE TRUE TRUE
CstatCI CutAge CutGen
TRUE TRUE TRUE
CutQ Day Day<-
TRUE TRUE TRUE
DB dBenf DecToBin
TRUE TRUE TRUE
DecToHex DecToOct DegToRad
TRUE TRUE TRUE
Desc DescToolsOptions dExtrVal
TRUE TRUE TRUE
dFrechet dGenExtrVal dGenPareto
TRUE TRUE TRUE
dGompertz dGumbel DiffDays360
TRUE TRUE TRUE
DigitSum DivCoef DivCoefMax
TRUE TRUE TRUE
Divisors dNegWeibull DoBy
TRUE TRUE TRUE
DoCall dOrder Dot
TRUE TRUE TRUE
DrawArc DrawBand DrawBezier
TRUE TRUE TRUE
DrawCircle DrawEllipse DrawRegPolygon
TRUE TRUE TRUE
dRevGumbel dRevWeibull dTri
TRUE TRUE TRUE
Dummy DunnettTest DunnTest
TRUE TRUE TRUE
DurbinWatsonTest Entropy Eps
TRUE TRUE TRUE
ErrBars EtaSq EX
TRUE TRUE TRUE
ExpFreq Factorize Fade
TRUE TRUE TRUE
FctArgs Fibonacci FindColor
TRUE TRUE TRUE
FindCorr FindRProfile FisherZ
TRUE TRUE TRUE
FisherZInv FixToTable Flags
TRUE TRUE TRUE
Fmt Format Frac
TRUE TRUE TRUE
Freq Freq2D GCD
TRUE TRUE TRUE
GenRandGroups GeomSn GeomTrans
TRUE TRUE TRUE
GetCalls GetCurrPP GetCurrWrd
TRUE TRUE TRUE
GetCurrXL GetNewPP GetNewWrd
TRUE TRUE TRUE
GetNewXL Gini GiniDeltas
TRUE TRUE TRUE
GiniSimpson Gmean GoodmanKruskalGamma
TRUE TRUE TRUE
GoodmanKruskalTau Gsd GTest
TRUE TRUE TRUE
Herfindahl HexToCol HexToDec
TRUE TRUE TRUE
HexToRgb HighLow Hmean
TRUE TRUE TRUE
HmsToMinute HmsToMinute HmsToSec
TRUE TRUE TRUE
HodgesLehmann HoeffD HosmerLemeshowTest
TRUE TRUE TRUE
HotellingsT2Test Hour HuberM
TRUE TRUE TRUE
HunterGaston ICC identify.formula
TRUE TRUE TRUE
IdentifyA Impute ImputeKnn
TRUE TRUE TRUE
InDots Interval IPMT
TRUE TRUE TRUE
IQRw IRR IsDate
TRUE TRUE TRUE
IsDichotomous IsEuclid IsLeapYear
TRUE TRUE TRUE
IsNumeric IsOdd IsPrime
TRUE TRUE TRUE
IsValidHwnd IsWeekend IsWhole
TRUE TRUE TRUE
IsZero JarqueBeraTest JonckheereTerpstraTest
TRUE TRUE TRUE
KappaM KendallTauA KendallTauB
TRUE TRUE TRUE
KendallW Keywords KrippAlpha
TRUE TRUE TRUE
Kurt Label Label<-
TRUE TRUE TRUE
Labels Labels<- Lambda
TRUE TRUE TRUE
Large LastDayOfMonth Lc
TRUE TRUE TRUE
LCM LehmacherTest LeveneTest
TRUE TRUE TRUE
LillieTest lines.Lc lines.lm
TRUE TRUE TRUE
lines.loess lines.smooth.spline lines.SmoothSpline
TRUE TRUE TRUE
LineToUser LinScale LOCF
TRUE TRUE TRUE
LOF Logit LogitInv
TRUE TRUE TRUE
LogSt LogStInv LongToRgb
TRUE TRUE TRUE
LsFct LsObj MAD
TRUE TRUE TRUE
MADCI MAE MAPE
TRUE TRUE TRUE
Mar Margins MaxDigits
TRUE TRUE TRUE
Mean MeanAD MeanCI
TRUE TRUE TRUE
MeanCIn MeanDiffCI MeanSE
TRUE TRUE TRUE
Median MedianCI Mgp
TRUE TRUE TRUE
Mgsub MHChisqTest Midx
TRUE TRUE TRUE
Minute MixColor Mode
TRUE TRUE TRUE
ModSummary Month MonthDays
TRUE TRUE TRUE
MosesTest MoveAvg MSE
TRUE TRUE TRUE
MultinomCI MultMerge MutInf
TRUE TRUE TRUE
N NAIf NAIfBlank
TRUE TRUE TRUE
NAIfZero NALevel Ndec
TRUE TRUE TRUE
NemenyiTest Nf NMAE
TRUE TRUE TRUE
NMSE Now NPV
TRUE TRUE TRUE
NPVFixBond NZ OctToDec
TRUE TRUE TRUE
OddsRatio OPR OrderMixed
TRUE TRUE TRUE
ORToRelRisk Outlier Overlap
TRUE TRUE TRUE
PageTest PairApply Pal
TRUE TRUE TRUE
ParseFormula ParseSASDatalines PartialSD
TRUE TRUE TRUE
PasswordDlg pBenf PDFManual
TRUE TRUE TRUE
PearsonTest PercentRank PercTable
TRUE TRUE TRUE
Permn pExtrVal pFrechet
TRUE TRUE TRUE
pGenExtrVal pGenPareto pGompertz
TRUE TRUE TRUE
pGumbel Phi Phrase
TRUE TRUE TRUE
plot.bagplot plot.Conf plot.Lc
TRUE TRUE TRUE
plot.Lclist plot.palette plot.PostHocTest
TRUE TRUE TRUE
PlotACF PlotArea PlotBag
TRUE TRUE TRUE
PlotBagPairs PlotBinTree PlotBubble
TRUE TRUE TRUE
PlotCandlestick PlotCashFlow PlotCirc
TRUE TRUE TRUE
PlotConDens PlotCorr PlotDot
TRUE TRUE TRUE
PlotDotCI PlotECDF PlotFaces
TRUE TRUE TRUE
PlotFdist PlotFun PlotGACF
TRUE TRUE TRUE
PlotLinesA PlotLog PlotMarDens
TRUE TRUE TRUE
PlotMiss PlotMonth PlotMosaic
TRUE TRUE TRUE
PlotMultiDens PlotPairs PlotPolar
TRUE TRUE TRUE
PlotProbDist PlotPyramid PlotQQ
TRUE TRUE TRUE
PlotTernary PlotTreemap PlotVenn
TRUE TRUE TRUE
PlotViolin PlotWeb PMT
TRUE TRUE TRUE
pNegWeibull PoissonCI PolarGrid
TRUE TRUE TRUE
PolToCart pOrder PostHocTest
TRUE TRUE TRUE
power.chisq.test PpAddSlide PPMT
TRUE TRUE TRUE
PpPlot PpText Prec
TRUE TRUE TRUE
pRevGumbel pRevWeibull Primes
TRUE TRUE TRUE
print.Assocs print.Conf print.CorPolychor
TRUE TRUE TRUE
print.DunnTest print.Freq print.HoeffD
TRUE TRUE TRUE
print.ICC print.mtest print.PercTable
TRUE TRUE TRUE
print.PostHocTest PseudoR2 PtInPoly
TRUE TRUE TRUE
pTri PtsToCm qBenf
TRUE TRUE TRUE
qExtrVal qFrechet qGenExtrVal
TRUE TRUE TRUE
qGenPareto qGompertz qGumbel
TRUE TRUE TRUE
qNegWeibull qRevGumbel qRevGumbelExp
TRUE TRUE TRUE
qRevWeibull qTri Quantile
TRUE TRUE TRUE
QuantileCI Quarter Quot
TRUE TRUE TRUE
RadToDeg Range Rank
TRUE TRUE TRUE
RBAL rBenf ReadSPSS
TRUE TRUE TRUE
Recode Recycle RelRisk
TRUE TRUE TRUE
Rename reorder.factor Rev
TRUE TRUE TRUE
RevCode rExtrVal rFrechet
TRUE TRUE TRUE
RgbToCmy RgbToCol RgbToHex
TRUE TRUE TRUE
RgbToLong rGenExtrVal rGenPareto
TRUE TRUE TRUE
rGompertz rGumbel RMSE
TRUE TRUE TRUE
RndPairs RndWord rNegWeibull
TRUE TRUE TRUE
RobScale RomanToInt rOrder
TRUE TRUE TRUE
Rosenbluth Rotate RoundTo
TRUE TRUE TRUE
rRevGumbel rRevWeibull RSessionAlive
TRUE TRUE TRUE
RSqCI rSum21 RTempdirAlive
TRUE TRUE TRUE
rTri RunsTest Sample
TRUE TRUE TRUE
SampleTwins SaveAs ScheffeTest
TRUE TRUE TRUE
SD SDN Second
TRUE TRUE TRUE
SecToHms SendOutlookMail Sens
TRUE TRUE TRUE
SetAlpha SetAttr SetNames
TRUE TRUE TRUE
Shade ShapiroFranciaTest SiegelTukeyRank
TRUE TRUE TRUE
SiegelTukeyTest SignTest Skew
TRUE TRUE TRUE
SLN Small SMAPE
TRUE TRUE TRUE
SmoothSpline Some SomersDelta
TRUE TRUE TRUE
Sort SortMixed SpearmanRho
TRUE TRUE TRUE
Spec SphToCart split.formula
TRUE TRUE TRUE
SplitAt SplitPath SplitToCol
TRUE TRUE TRUE
SplitToDummy SpreadOut Stamp
TRUE TRUE TRUE
StdCoef Str StrAbbr
TRUE TRUE TRUE
StrAlign Strata StrCap
TRUE TRUE TRUE
StrChop StrCountW StrDist
TRUE TRUE TRUE
StrExtract StrExtractBetween StripAttr
TRUE TRUE TRUE
StrIsNumeric StrLeft StrPad
TRUE TRUE TRUE
StrPos StrRev StrRight
TRUE TRUE TRUE
StrSpell StrSplit StrTrim
TRUE TRUE TRUE
StrTrunc StrVal StuartMaxwellTest
TRUE TRUE TRUE
StuartTauC SumCI SYD
TRUE TRUE TRUE
SysInfo TextContrastColor TextToTable
TRUE TRUE TRUE
TheilU Timezone TitleRect
TRUE TRUE TRUE
TMod Today ToLong
TRUE TRUE TRUE
TOne ToWide ToWrd
TRUE TRUE TRUE
ToWrdB ToWrdPlot ToXL
TRUE TRUE TRUE
Trim TschuprowT TTestA
TRUE TRUE TRUE
TukeyBiweight TwoGroups UncertCoef
TRUE TRUE TRUE
UnirootAll Unit Unit<-
TRUE TRUE TRUE
Untable Unwhich VanWaerdenTest
TRUE TRUE TRUE
Var VarCI VarN
TRUE TRUE TRUE
VarTest VarX VecRot
TRUE TRUE TRUE
VecShift VIF Vigenere
TRUE TRUE TRUE
VonNeumannTest Week Weekday
TRUE TRUE TRUE
Winsorize WithOptions WoolfTest
TRUE TRUE TRUE
WrdBookmark WrdCaption WrdCellRange
TRUE TRUE TRUE
WrdDeleteBookmark WrdFont WrdFont<-
TRUE TRUE TRUE
WrdFormatCells WrdGoto WrdInsertBookmark
TRUE TRUE TRUE
WrdKill WrdMergeCells WrdOpenFile
TRUE TRUE TRUE
WrdPageBreak WrdParagraphFormat WrdParagraphFormat<-
TRUE TRUE TRUE
WrdPlot WrdSaveAs WrdStyle
TRUE TRUE TRUE
WrdStyle<- WrdTable WrdTableBorders
TRUE TRUE TRUE
WrdTableHeading WrdUpdateBookmark XLCurrReg
TRUE TRUE TRUE
XLDateToPOSIXct XLGetRange XLGetWorkbook
TRUE TRUE TRUE
XLKill XLNamedReg XLSaveAs
TRUE TRUE TRUE
XLView Year YearDay
TRUE TRUE TRUE
YearDays YearMonth YTM
TRUE TRUE TRUE
YuenTTest YuleQ YuleY
TRUE TRUE TRUE
ZeroIfNA Zodiac ZTest
TRUE TRUE TRUE Examples
There are 415 help pages with examples, from 415 (100.00 %).
NEWS
The package has NEWS file and it is current.
License
The package uses .
Installation environment
System Info
| Field | Value |
|---|---|
| Image | rhub/ref-image |
| OS | Ubuntu 24.04.1 LTS |
| Platform | x86_64-pc-linux-gnu |
| System | x86_64, linux-gnu |
| Execution Time | 2025-02-18 03:47:29 UTC |
System information. Table about the system used to check the package.
R Session Info
Information about the R environment and capabilities:
R version 4.4.2 (2024-10-31)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 24.04.1 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so; LAPACK version 3.12.0
locale:
[1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8
[4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8
[7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C
time zone: UTC
tzcode source: system (glibc)
attached base packages:
[1] tools stats graphics grDevices utils datasets methods
[8] base
loaded via a namespace (and not attached):
[1] riskreports_0.0.0.9003 compiler_4.4.2 fastmap_1.2.0
[4] cli_3.6.4 htmltools_0.5.8.1 yaml_2.3.10
[7] rmarkdown_2.29 knitr_1.49 jsonlite_1.8.9
[10] xfun_0.50 digest_0.6.37 rlang_1.1.5
[13] evaluate_1.0.3 Platform used:
OS.type file.sep dynlib.ext GUI endian pkgType path.sep
"unix" "/" ".so" "X11" "little" "source" ":"
r_arch
"" R’s capabilities:
jpeg png tiff tcltk X11 aqua
TRUE TRUE TRUE TRUE FALSE FALSE
http/ftp sockets libxml fifo cledit iconv
TRUE TRUE FALSE TRUE FALSE TRUE
NLS Rprof profmem cairo ICU long.double
TRUE TRUE TRUE TRUE TRUE TRUE
libcurl
TRUE External software:
zlib
"1.3"
bzlib
"1.0.8, 13-Jul-2019"
xz
"5.4.5"
libdeflate
"1.19"
PCRE
"10.42 2022-12-11"
ICU
"74.2"
TRE
"TRE 0.8.0 R_fixes (BSD)"
iconv
"glibc 2.39"
readline
"8.2"
BLAS
"/usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3" Graphics external software:
cairo cairoFT pango
"1.18.0" "" "1.52.1"
libpng jpeg libtiff
"1.6.43" "8.0" "LIBTIFF, Version 4.5.1" Numerical characteristics of the machine:
double.eps double.neg.eps double.xmin
2.220446e-16 1.110223e-16 2.225074e-308
double.xmax double.base double.digits
1.797693e+308 2.000000e+00 5.300000e+01
double.rounding double.guard double.ulp.digits
5.000000e+00 0.000000e+00 -5.200000e+01
double.neg.ulp.digits double.exponent double.min.exp
-5.300000e+01 1.100000e+01 -1.022000e+03
double.max.exp integer.max sizeof.long
1.024000e+03 2.147484e+09 8.000000e+00
sizeof.longlong sizeof.longdouble sizeof.pointer
8.000000e+00 1.600000e+01 8.000000e+00
sizeof.time_t longdouble.eps longdouble.neg.eps
8.000000e+00 1.084202e-19 5.421011e-20
longdouble.digits longdouble.rounding longdouble.guard
6.400000e+01 5.000000e+00 0.000000e+00
longdouble.ulp.digits longdouble.neg.ulp.digits longdouble.exponent
-6.300000e+01 -6.400000e+01 1.500000e+01
longdouble.min.exp longdouble.max.exp
-1.638200e+04 1.638400e+04 Random number generation process:
[1] "Mersenne-Twister" "Inversion" "Rejection" Information about the environment
Environmental and options variables affect how package checks and software in it might behave. Here is the environmental variables when running this report
_R_CHECK_SYSTEM_CLOCK_
FALSE
ACCEPT_EULA Y
ACTIONS_RUNNER_ACTION_ARCHIVE_CACHE
/opt/actionarchivecache
AGENT_TOOLSDIRECTORY /opt/hostedtoolcache
ANDROID_HOME /usr/local/lib/android/sdk
ANDROID_NDK /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_HOME /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_LATEST_HOME
/usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_ROOT /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_SDK_ROOT /usr/local/lib/android/sdk
ANT_HOME /usr/share/ant
AZURE_EXTENSION_DIR /opt/az/azcliextensions
BOOTSTRAP_HASKELL_NONINTERACTIVE
1
BUNDLE_EXT linux-amd64.deb
CHROME_BIN /usr/bin/google-chrome
CHROMEWEBDRIVER /usr/local/share/chromedriver-linux64
CI true
CONDA /usr/share/miniconda
DEBIAN_FRONTEND noninteractive
DENO_DOM_PLUGIN /opt/quarto/bin/tools/x86_64/deno_dom/libplugin.so
DENO_NO_UPDATE_CHECK 1
DENO_TLS_CA_STORE system,mozilla
DEPLOYMENT_BASEPATH /opt/runner
DOTNET_MULTILEVEL_LOOKUP
0
DOTNET_NOLOGO 1
DOTNET_SKIP_FIRST_TIME_EXPERIENCE
1
EDGEWEBDRIVER /usr/local/share/edge_driver
EDITOR vi
GECKOWEBDRIVER /usr/local/share/gecko_driver
GHCUP_INSTALL_BASE_PREFIX
/usr/local
GITHUB_ACTION __run
GITHUB_ACTION_REF
GITHUB_ACTION_REPOSITORY
GITHUB_ACTIONS true
GITHUB_ACTOR llrs-roche
GITHUB_ACTOR_ID 185338939
GITHUB_API_URL https://api.github.com
GITHUB_BASE_REF
GITHUB_ENV /home/runner/work/_temp/_runner_file_commands/set_env_b4db8720-2381-4f5c-84c9-546b4603e3d5
GITHUB_EVENT_NAME schedule
GITHUB_EVENT_PATH /home/runner/work/_temp/_github_workflow/event.json
GITHUB_GRAPHQL_URL https://api.github.com/graphql
GITHUB_HEAD_REF
GITHUB_JOB main
GITHUB_OUTPUT /home/runner/work/_temp/_runner_file_commands/set_output_b4db8720-2381-4f5c-84c9-546b4603e3d5
GITHUB_PATH /home/runner/work/_temp/_runner_file_commands/add_path_b4db8720-2381-4f5c-84c9-546b4603e3d5
GITHUB_REF refs/heads/main
GITHUB_REF_NAME main
GITHUB_REF_PROTECTED false
GITHUB_REF_TYPE branch
GITHUB_REPOSITORY pharmaR/pharmapkgs
GITHUB_REPOSITORY_ID 798326913
GITHUB_REPOSITORY_OWNER
pharmaR
GITHUB_REPOSITORY_OWNER_ID
42115094
GITHUB_RETENTION_DAYS 90
GITHUB_RUN_ATTEMPT 1
GITHUB_RUN_ID 13382492418
GITHUB_RUN_NUMBER 95
GITHUB_SERVER_URL https://github.com
GITHUB_SHA 157fff498035c254c88cbf9e2cfd3aeb384ab8f5
GITHUB_STATE /home/runner/work/_temp/_runner_file_commands/save_state_b4db8720-2381-4f5c-84c9-546b4603e3d5
GITHUB_STEP_SUMMARY /home/runner/work/_temp/_runner_file_commands/step_summary_b4db8720-2381-4f5c-84c9-546b4603e3d5
GITHUB_TRIGGERING_ACTOR
llrs-roche
GITHUB_WORKFLOW Update package repositories
GITHUB_WORKFLOW_REF pharmaR/pharmapkgs/.github/workflows/update-repos.yml@refs/heads/main
GITHUB_WORKFLOW_SHA 157fff498035c254c88cbf9e2cfd3aeb384ab8f5
GITHUB_WORKSPACE /home/runner/work/pharmapkgs/pharmapkgs
GOROOT_1_21_X64 /opt/hostedtoolcache/go/1.21.13/x64
GOROOT_1_22_X64 /opt/hostedtoolcache/go/1.22.12/x64
GOROOT_1_23_X64 /opt/hostedtoolcache/go/1.23.6/x64
GRADLE_HOME /usr/share/gradle-8.12.1
HOME /home/runner
HOMEBREW_CLEANUP_PERIODIC_FULL_DAYS
3650
HOMEBREW_NO_AUTO_UPDATE
1
ImageOS ubuntu24
ImageVersion 20250209.1.0
INVOCATION_ID bc1187a89ae54556a37eda746d0322c1
JAVA_HOME /usr/lib/jvm/temurin-17-jdk-amd64
JAVA_HOME_11_X64 /usr/lib/jvm/temurin-11-jdk-amd64
JAVA_HOME_17_X64 /usr/lib/jvm/temurin-17-jdk-amd64
JAVA_HOME_21_X64 /usr/lib/jvm/temurin-21-jdk-amd64
JAVA_HOME_8_X64 /usr/lib/jvm/temurin-8-jdk-amd64
JOURNAL_STREAM 8:8324
LANG C.UTF-8
LD_LIBRARY_PATH /opt/R/4.4.2/lib/R/lib:/usr/local/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/temurin-17-jdk-amd64/lib/server:/opt/R/4.4.2/lib/R/lib:/usr/local/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/temurin-17-jdk-amd64/lib/server
LN_S ln -s
LOGGER_LOG_LEVEL DEBUG
MAKE make
MEMORY_PRESSURE_WATCH /sys/fs/cgroup/system.slice/runner-provisioner.service/memory.pressure
MEMORY_PRESSURE_WRITE c29tZSAyMDAwMDAgMjAwMDAwMAA=
NOT_CRAN true
NVM_DIR /home/runner/.nvm
PAGER /usr/bin/pager
PATH /snap/bin:/home/runner/.local/bin:/opt/pipx_bin:/home/runner/.cargo/bin:/home/runner/.config/composer/vendor/bin:/usr/local/.ghcup/bin:/home/runner/.dotnet/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
PERFLOG_LOCATION_SETTING
RUNNER_PERFLOG
PHARMAPKGS_EXCLUDED_METRICS
assess_covr_coverage,assess_r_cmd_check
PHARMAPKGS_LIMIT 1000
PHARMAPKGS_PLATFORM ubuntu-22.04
PHARMAPKGS_R_VERSION 4.4
PHARMAPKGS_REMOTE_REPO
https://cloud.r-project.org/
PIPX_BIN_DIR /opt/pipx_bin
PIPX_HOME /opt/pipx
PKGCACHE_HTTP_VERSION 2
PKGLOAD_PARENT_TEMPDIR
/tmp/RtmpqWpBI2
POWERSHELL_DISTRIBUTION_CHANNEL
GitHub-Actions-ubuntu24
PROCESSX_PS1bb4156704b9_1739850443
YES
PWD /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_BIN_PATH /opt/quarto/bin
QUARTO_DENO /opt/quarto/bin/tools/x86_64/deno
QUARTO_DOCUMENT_PATH /home/runner/work/pharmapkgs/pharmapkgs/inst/report
QUARTO_PROFILE
QUARTO_PROJECT_DIR /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_PROJECT_ROOT /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_ROOT /
QUARTO_SHARE_PATH /opt/quarto/share
R_ARCH
R_BROWSER xdg-open
R_BZIPCMD /usr/bin/bzip2
R_DOC_DIR /opt/R/4.4.2/lib/R/doc
R_GZIPCMD /usr/bin/gzip
R_HOME /opt/R/4.4.2/lib/R
R_INCLUDE_DIR /opt/R/4.4.2/lib/R/include
R_LIB_FOR_PAK /opt/R/4.4.2/lib/R/site-library
R_LIBS_SITE /opt/R/4.4.2/lib/R/site-library
R_LIBS_USER /home/runner/work/_temp/Library
R_PAPERSIZE letter
R_PAPERSIZE_USER letter
R_PDFVIEWER /usr/bin/xdg-open
R_PLATFORM x86_64-pc-linux-gnu
R_PRINTCMD /usr/bin/lpr
R_RD4PDF times,inconsolata,hyper
R_SESSION_TMPDIR /tmp/Rtmp47x3uI
R_SHARE_DIR /opt/R/4.4.2/lib/R/share
R_STRIP_SHARED_LIB strip --strip-unneeded
R_STRIP_STATIC_LIB strip --strip-debug
R_TEXI2DVICMD /usr/bin/texi2dvi
R_UNZIPCMD /usr/bin/unzip
R_ZIPCMD /usr/bin/zip
RUNNER_ARCH X64
RUNNER_ENVIRONMENT github-hosted
RUNNER_NAME GitHub Actions 17
RUNNER_OS Linux
RUNNER_PERFLOG /home/runner/perflog
RUNNER_TEMP /home/runner/work/_temp
RUNNER_TOOL_CACHE /opt/hostedtoolcache
RUNNER_TRACKING_ID github_c8a03d70-50b4-4e41-a95e-f8c1a5765170
RUNNER_USER runner
RUNNER_WORKSPACE /home/runner/work/pharmapkgs
SED /usr/bin/sed
SELENIUM_JAR_PATH /usr/share/java/selenium-server.jar
SGX_AESM_ADDR 1
SHLVL 1
STATS_D true
STATS_D_D true
STATS_D_TC true
STATS_EXT true
STATS_EXTP https://provjobdprod.z13.web.core.windows.net/settings/provjobdsettings-latest/provjobd.data
STATS_PIP false
STATS_RDCL true
STATS_TRP true
STATS_UE true
STATS_V3PS true
STATS_VMD true
STATS_VMFE true
SWIFT_PATH /usr/share/swift/usr/bin
SYSTEMD_EXEC_PID 830
TAR /usr/bin/tar
TZ UTC
USER runner
VCPKG_INSTALLATION_ROOT
/usr/local/share/vcpkg
XDG_CONFIG_HOME /home/runner/.config
XDG_RUNTIME_DIR /run/user/1001These are the options set to generate the report:
$add.smooth
[1] TRUE
$bitmapType
[1] "cairo"
$browser
[1] "xdg-open"
$browserNLdisabled
[1] FALSE
$callr.condition_handler_cli_message
function (msg)
{
custom_handler <- getOption("cli.default_handler")
if (is.function(custom_handler)) {
custom_handler(msg)
}
else {
cli_server_default(msg)
}
}
<bytecode: 0x561ee5935910>
<environment: namespace:cli>
$catch.script.errors
[1] FALSE
$CBoundsCheck
[1] FALSE
$check.bounds
[1] FALSE
$citation.bibtex.max
[1] 1
$continue
[1] "+ "
$contrasts
unordered ordered
"contr.treatment" "contr.poly"
$covr.record_tests
[1] TRUE
$defaultPackages
[1] "datasets" "utils" "grDevices" "graphics" "stats" "methods"
$demo.ask
[1] "default"
$deparse.cutoff
[1] 60
$device
function (width = 7, height = 7, ...)
{
grDevices::pdf(NULL, width, height, ...)
}
<bytecode: 0x561ee4ff3308>
<environment: namespace:knitr>
$device.ask.default
[1] FALSE
$digits
[1] 7
$dvipscmd
[1] "dvips"
$echo
[1] FALSE
$editor
[1] "vi"
$encoding
[1] "native.enc"
$example.ask
[1] "default"
$expressions
[1] 5000
$help.search.types
[1] "vignette" "demo" "help"
$help.try.all.packages
[1] FALSE
$htmltools.preserve.raw
[1] TRUE
$HTTPUserAgent
[1] "R/4.4.2 R (4.4.2 x86_64-pc-linux-gnu x86_64 linux-gnu) on GitHub Actions"
$internet.info
[1] 2
$keep.parse.data
[1] TRUE
$keep.parse.data.pkgs
[1] FALSE
$keep.source
[1] FALSE
$keep.source.pkgs
[1] FALSE
$knitr.in.progress
[1] TRUE
$locatorBell
[1] TRUE
$mailer
[1] "mailto"
$matprod
[1] "default"
$max.contour.segments
[1] 25000
$max.print
[1] 99999
$menu.graphics
[1] TRUE
$na.action
[1] "na.omit"
$Ncpus
[1] 1
$nwarnings
[1] 50
$OutDec
[1] "."
$pager
[1] "/opt/R/4.4.2/lib/R/bin/pager"
$papersize
[1] "letter"
$PCRE_limit_recursion
[1] NA
$PCRE_study
[1] FALSE
$PCRE_use_JIT
[1] TRUE
$pdfviewer
[1] "/usr/bin/xdg-open"
$pkgType
[1] "source"
$printcmd
[1] "/usr/bin/lpr"
$prompt
[1] "> "
$repos
CRAN
"https://cran.rstudio.com"
$rl_word_breaks
[1] " \t\n\"\\'`><=%;,|&{()}"
$rlang_trace_top_env
<environment: R_GlobalEnv>
$scipen
[1] 0
$show.coef.Pvalues
[1] TRUE
$show.error.messages
[1] TRUE
$show.signif.stars
[1] TRUE
$showErrorCalls
[1] TRUE
$showNCalls
[1] 50
$showWarnCalls
[1] FALSE
$str
$str$strict.width
[1] "no"
$str$digits.d
[1] 3
$str$vec.len
[1] 4
$str$list.len
[1] 99
$str$deparse.lines
NULL
$str$drop.deparse.attr
[1] TRUE
$str$formatNum
function (x, ...)
format(x, trim = TRUE, drop0trailing = TRUE, ...)
<environment: 0x561ee4e0d520>
$str.dendrogram.last
[1] "`"
$texi2dvi
[1] "/usr/bin/texi2dvi"
$tikzMetricsDictionary
[1] "validation_report_DescTools_v0.99.59-tikzDictionary"
$timeout
[1] 60
$try.outFile
A connection with
description ""
class "file"
mode "w+b"
text "binary"
opened "opened"
can read "yes"
can write "yes"
$ts.eps
[1] 1e-05
$ts.S.compat
[1] FALSE
$unzip
[1] "/usr/bin/unzip"
$useFancyQuotes
[1] FALSE
$verbose
[1] FALSE
$warn
[1] 0
$warning.length
[1] 1000
$warnPartialMatchArgs
[1] FALSE
$warnPartialMatchAttr
[1] FALSE
$warnPartialMatchDollar
[1] FALSE
$width
[1] 80