Validation Report - CNAIM@2.1.4

Context

This report is fully automated and builds on rhub/ref-image image. Documents the installation of this package on an open source R environment, focusing on:

  • Installation environment description
  • Testing coverage

It is limited to assess whether unit tests and documentation are present and can execute without error. An assessment would be required that the tests and documentation are meaningful.

Package CNAIM

Metric based risk assessment

The following metrics are derived from the riskmetric R package.

has_news 0
exported_namespace 204
has_vignettes 4
export_help 204
has_website TRUE
has_maintainer Mohsin Vindhani
bugs_status subscript out of bounds
has_bug_reports_url 1
downloads_1yr 3229
reverse_dependencies 0
has_examples 1
dependencies 8
license MIT + file LICENSE

Package general assessment: Coverage, check results, size, download the last year, reverse dependencies and number of dependencies.

Dependencies

Overall the package has these dependencies:

package type
1 plyr Imports
2 dplyr Imports
3 jsonlite Imports
4 magrittr Imports
5 r2d3 Imports
6 ggplot2 Imports
7 stringr Imports
8 tibble Imports

Package dependencies

Reverse dependencies

Overall the package has 0 reverse dependencies:

Namespace

Overall the package has 204 exported objects. 204 are documented:

                                      beta_1 
                                        TRUE 
                                      beta_2 
                                        TRUE 
                                         cof 
                                        TRUE 
                     cof_transformer_04_10kv 
                                        TRUE 
                        cof_transformer_11kv 
                                        TRUE 
                              current_health 
                                        TRUE 
                           dga_test_modifier 
                                        TRUE 
                          duty_factor_cables 
                                        TRUE 
             duty_factor_transformer_11_20kv 
                                        TRUE 
             duty_factor_transformer_33_66kv 
                                        TRUE 
                                    e_cof_tf 
                                        TRUE 
                environmental_cof_board_04kv 
                                        TRUE 
            environmental_cof_cables_04_10kv 
                                        TRUE 
            environmental_cof_cables_60_30kv 
                                        TRUE 
                environmental_cof_ehv_cables 
                                        TRUE 
              environmental_cof_ehv_fittings 
                                        TRUE 
            environmental_cof_ehv_switchgear 
                                        TRUE 
environmental_cof_hv_switchgear_distribution 
                                        TRUE 
     environmental_cof_hv_switchgear_primary 
                                        TRUE 
   environmental_cof_lv_switchgear_and_other 
                                        TRUE 
                    environmental_cof_lv_ugb 
                                        TRUE 
                  environmental_cof_ohl_cond 
                                        TRUE 
             environmental_cof_ohl_cond_50kv 
                                        TRUE 
         environmental_cof_ohl_fittings_50kv 
                                        TRUE 
               environmental_cof_pillar_04kv 
                                        TRUE 
                     environmental_cof_poles 
                                        TRUE 
    environmental_cof_poles_ohl_support_50kv 
                                        TRUE 
                     environmental_cof_relay 
                                        TRUE 
               environmental_cof_serviceline 
                                        TRUE 
                environmental_cof_sub_cables 
                                        TRUE 
            environmental_cof_submarine_10kv 
                                        TRUE 
         environmental_cof_submarine_30_60kv 
                                        TRUE 
        environmental_cof_switchgear_30_60kv 
                                        TRUE 
   environmental_cof_switchgear_primary_10kv 
                                        TRUE 
 environmental_cof_switchgear_secondary_10kv 
                                        TRUE 
    environmental_cof_tower_ohl_support_50kv 
                                        TRUE 
                    environmental_cof_towers 
                                        TRUE 
       environmental_cof_transformer_30_60kv 
                                        TRUE 
              environmental_cof_transformers 
                                        TRUE 
                               expected_life 
                                        TRUE 
                      f_cof_transformer_11kv 
                                        TRUE 
                           ffa_test_modifier 
                                        TRUE 
                    financial_cof_board_04kv 
                                        TRUE 
                financial_cof_cables_04_10kv 
                                        TRUE 
                financial_cof_cables_60_30kv 
                                        TRUE 
                    financial_cof_ehv_cables 
                                        TRUE 
                  financial_cof_ehv_fittings 
                                        TRUE 
                financial_cof_ehv_switchgear 
                                        TRUE 
    financial_cof_hv_switchgear_distribution 
                                        TRUE 
         financial_cof_hv_switchgear_primary 
                                        TRUE 
       financial_cof_lv_switchgear_and_other 
                                        TRUE 
                        financial_cof_lv_ugb 
                                        TRUE 
                      financial_cof_ohl_cond 
                                        TRUE 
                 financial_cof_ohl_cond_50kv 
                                        TRUE 
             financial_cof_ohl_fittings_50kv 
                                        TRUE 
                   financial_cof_pillar_04kv 
                                        TRUE 
                         financial_cof_poles 
                                        TRUE 
        financial_cof_poles_ohl_support_50kv 
                                        TRUE 
                         financial_cof_relay 
                                        TRUE 
                   financial_cof_serviceline 
                                        TRUE 
                    financial_cof_sub_cables 
                                        TRUE 
         financial_cof_submarine_cables_10kv 
                                        TRUE 
      financial_cof_submarine_cables_30_60kv 
                                        TRUE 
            financial_cof_switchgear_30_60kv 
                                        TRUE 
       financial_cof_switchgear_primary_10kv 
                                        TRUE 
     financial_cof_switchgear_secondary_10kv 
                                        TRUE 
        financial_cof_tower_ohl_support_50kv 
                                        TRUE 
                        financial_cof_towers 
                                        TRUE 
           financial_cof_transformer_30_60kv 
                                        TRUE 
                  financial_cof_transformers 
                                        TRUE 
              health_score_excl_ehv_132kv_tf 
                                        TRUE 
                              initial_health 
                                        TRUE 
                             location_factor 
                                        TRUE 
                         location_factor_sub 
                                        TRUE 
                     matrix_adjusted_circles 
                                        TRUE 
                   matrix_adjusted_intervals 
                                        TRUE 
                                         mmi 
                                        TRUE 
                     n_cof_excl_ehv_132kv_tf 
                                        TRUE 
                      network_cof_board_04kv 
                                        TRUE 
                  network_cof_cables_04_10kv 
                                        TRUE 
                  network_cof_cables_60_30kv 
                                        TRUE 
                      network_cof_ehv_cables 
                                        TRUE 
                    network_cof_ehv_fittings 
                                        TRUE 
                        network_cof_ehv_pole 
                                        TRUE 
                   network_cof_ehv_sub_cable 
                                        TRUE 
                  network_cof_ehv_switchgear 
                                        TRUE 
                     network_cof_hv_lv_poles 
                                        TRUE 
                   network_cof_hv_sub_cables 
                                        TRUE 
      network_cof_hv_switchgear_distribution 
                                        TRUE 
           network_cof_hv_switchgear_primary 
                                        TRUE 
         network_cof_lv_switchgear_and_other 
                                        TRUE 
                          network_cof_lv_ugb 
                                        TRUE 
                        network_cof_ohl_cond 
                                        TRUE 
                   network_cof_ohl_cond_50kv 
                                        TRUE 
               network_cof_ohl_fittings_50kv 
                                        TRUE 
                     network_cof_pillar_04kv 
                                        TRUE 
          network_cof_poles_ohl_support_50kv 
                                        TRUE 
                           network_cof_relay 
                                        TRUE 
                     network_cof_serviceline 
                                        TRUE 
           network_cof_submarine_cables_10kv 
                                        TRUE 
        network_cof_submarine_cables_30_60kv 
                                        TRUE 
              network_cof_switchgear_30_60kv 
                                        TRUE 
         network_cof_switchgear_primary_10kv 
                                        TRUE 
       network_cof_switchgear_secondary_10kv 
                                        TRUE 
                           network_cof_tower 
                                        TRUE 
          network_cof_tower_ohl_support_50kv 
                                        TRUE 
             network_cof_transformer_30_60kv 
                                        TRUE 
                    network_cof_transformers 
                                        TRUE 
                           oil_test_modifier 
                                        TRUE 
                                pof_132kv_cb 
                                        TRUE 
                              pof_board_04kv 
                                        TRUE 
                                pof_building 
                                        TRUE 
                         pof_cables_04kv_pex 
                                        TRUE 
                         pof_cables_10kv_oil 
                                        TRUE 
                         pof_cables_10kv_pex 
                                        TRUE 
                            pof_cables_132kv 
                                        TRUE 
                          pof_cables_60_30kv 
                                        TRUE 
                          pof_cables_66_33kv 
                                        TRUE 
                            pof_ehv_fittings 
                                        TRUE 
                          pof_ehv_switchgear 
                                        TRUE 
                       pof_future_board_04kv 
                                        TRUE 
                         pof_future_building 
                                        TRUE 
                  pof_future_cables_04kv_pex 
                                        TRUE 
                  pof_future_cables_10kv_oil 
                                        TRUE 
                  pof_future_cables_10kv_pex 
                                        TRUE 
                     pof_future_cables_132kv 
                                        TRUE 
                   pof_future_cables_60_30kv 
                                        TRUE 
                   pof_future_cables_66_33kv 
                                        TRUE 
                            pof_future_meter 
                                        TRUE 
             pof_future_ohl_cond_132_66_33kv 
                                        TRUE 
                    pof_future_ohl_cond_50kv 
                                        TRUE 
                pof_future_ohl_fittings_50kv 
                                        TRUE 
                      pof_future_pillar_04kv 
                                        TRUE 
                            pof_future_poles 
                                        TRUE 
           pof_future_poles_ohl_support_50kv 
                                        TRUE 
                            pof_future_relay 
                                        TRUE 
                              pof_future_rtu 
                                        TRUE 
                      pof_future_serviceline 
                                        TRUE 
                 pof_future_submarine_cables 
                                        TRUE 
        pof_future_submarine_cables_10kv_oil 
                                        TRUE 
        pof_future_submarine_cables_10kv_pex 
                                        TRUE 
     pof_future_submarine_cables_30_60kv_oil 
                                        TRUE 
     pof_future_submarine_cables_30_60kv_pex 
                                        TRUE 
               pof_future_switchgear_30_60kv 
                                        TRUE 
          pof_future_switchgear_primary_10kv 
                                        TRUE 
        pof_future_switchgear_secondary_10kv 
                                        TRUE 
              pof_future_transformer_04_10kv 
                                        TRUE 
              pof_future_transformer_11_20kv 
                                        TRUE 
                pof_future_transformer_132kv 
                                        TRUE 
              pof_future_transformer_30_60kv 
                                        TRUE 
              pof_future_transformer_33_66kv 
                                        TRUE 
              pof_hv_switchgear_distribution 
                                        TRUE 
                   pof_hv_switchgear_primary 
                                        TRUE 
                 pof_lv_switchgear_and_other 
                                        TRUE 
                                  pof_lv_ugb 
                                        TRUE 
                                   pof_meter 
                                        TRUE 
                    pof_ohl_cond_132_66_33kv 
                                        TRUE 
                                   pof_poles 
                                        TRUE 
                        pof_submarine_cables 
                                        TRUE 
                 pof_switchgear_primary_10kv 
                                        TRUE 
               pof_switchgear_secondary_10kV 
                                        TRUE 
                  pof_tower_ohl_support_50kv 
                                        TRUE 
                                  pof_towers 
                                        TRUE 
                     pof_transformer_04_10kv 
                                        TRUE 
                     pof_transformer_11_20kv 
                                        TRUE 
                       pof_transformer_132kv 
                                        TRUE 
                     pof_transformer_30_60kv 
                                        TRUE 
                     pof_transformer_33_66kv 
                                        TRUE 
                       predict_weibull_model 
                                        TRUE 
                   present_value_future_risk 
                                        TRUE 
                            risk_calculation 
                                        TRUE 
                     risk_matrix_points_plot 
                                        TRUE 
                       risk_matrix_structure 
                                        TRUE 
                    risk_matrix_summary_plot 
                                        TRUE 
                            s_cof_swg_tf_ohl 
                                        TRUE 
                       safety_cof_board_04kv 
                                        TRUE 
                   safety_cof_cables_04_10kv 
                                        TRUE 
                   safety_cof_cables_60_30kv 
                                        TRUE 
                       safety_cof_ehv_cables 
                                        TRUE 
                     safety_cof_ehv_fittings 
                                        TRUE 
                   safety_cof_ehv_switchgear 
                                        TRUE 
       safety_cof_hv_switchgear_distribution 
                                        TRUE 
            safety_cof_hv_switchgear_primary 
                                        TRUE 
          safety_cof_lv_switchgear_and_other 
                                        TRUE 
                           safety_cof_lv_ugb 
                                        TRUE 
                         safety_cof_ohl_cond 
                                        TRUE 
                    safety_cof_ohl_cond_50kv 
                                        TRUE 
                safety_cof_ohl_fittings_50kv 
                                        TRUE 
                      safety_cof_pillar_04kv 
                                        TRUE 
                            safety_cof_poles 
                                        TRUE 
           safety_cof_poles_ohl_support_50kv 
                                        TRUE 
                            safety_cof_relay 
                                        TRUE 
                      safety_cof_serviceline 
                                        TRUE 
                       safety_cof_sub_cables 
                                        TRUE 
            safety_cof_submarine_cables_10kv 
                                        TRUE 
         safety_cof_submarine_cables_30_60kv 
                                        TRUE 
               safety_cof_switchgear_30_60kv 
                                        TRUE 
          safety_cof_switchgear_primary_10kv 
                                        TRUE 
        safety_cof_switchgear_secondary_10kv 
                                        TRUE 
           safety_cof_tower_ohl_support_50kv 
                                        TRUE 
                           safety_cof_towers 
                                        TRUE 
              safety_cof_transformer_30_60kv 
                                        TRUE 
                     safety_cof_transformers 
                                        TRUE 
                         train_weibull_model 
                                        TRUE 

Examples

There are 206 help pages with examples, from 206 (100.00 %).

NEWS

The package has NEWS file and it is current.

License

The package uses .

Installation environment

System Info

Field Value
Image rhub/ref-image
OS Ubuntu 24.04.1 LTS
Platform x86_64-pc-linux-gnu
System x86_64, linux-gnu
Execution Time 2025-02-16 04:46:55 UTC

System information. Table about the system used to check the package.

R Session Info

Information about the R environment and capabilities:

R version 4.4.2 (2024-10-31)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 24.04.1 LTS

Matrix products: default
BLAS:   /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so;  LAPACK version 3.12.0

locale:
 [1] LC_CTYPE=C.UTF-8       LC_NUMERIC=C           LC_TIME=C.UTF-8       
 [4] LC_COLLATE=C.UTF-8     LC_MONETARY=C.UTF-8    LC_MESSAGES=C.UTF-8   
 [7] LC_PAPER=C.UTF-8       LC_NAME=C              LC_ADDRESS=C          
[10] LC_TELEPHONE=C         LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C   

time zone: UTC
tzcode source: system (glibc)

attached base packages:
[1] tools     stats     graphics  grDevices utils     datasets  methods  
[8] base     

loaded via a namespace (and not attached):
 [1] riskreports_0.0.0.9003 compiler_4.4.2         fastmap_1.2.0         
 [4] cli_3.6.4              htmltools_0.5.8.1      yaml_2.3.10           
 [7] rmarkdown_2.29         knitr_1.49             jsonlite_1.8.9        
[10] xfun_0.50              digest_0.6.37          rlang_1.1.5           
[13] evaluate_1.0.3        

Platform used:

   OS.type   file.sep dynlib.ext        GUI     endian    pkgType   path.sep 
    "unix"        "/"      ".so"      "X11"   "little"   "source"        ":" 
    r_arch 
        "" 

R’s capabilities:

       jpeg         png        tiff       tcltk         X11        aqua 
       TRUE        TRUE        TRUE        TRUE       FALSE       FALSE 
   http/ftp     sockets      libxml        fifo      cledit       iconv 
       TRUE        TRUE       FALSE        TRUE       FALSE        TRUE 
        NLS       Rprof     profmem       cairo         ICU long.double 
       TRUE        TRUE        TRUE        TRUE        TRUE        TRUE 
    libcurl 
       TRUE 

External software:

                                                     zlib 
                                                    "1.3" 
                                                    bzlib 
                                     "1.0.8, 13-Jul-2019" 
                                                       xz 
                                                  "5.4.5" 
                                               libdeflate 
                                                   "1.19" 
                                                     PCRE 
                                       "10.42 2022-12-11" 
                                                      ICU 
                                                   "74.2" 
                                                      TRE 
                                "TRE 0.8.0 R_fixes (BSD)" 
                                                    iconv 
                                             "glibc 2.39" 
                                                 readline 
                                                    "8.2" 
                                                     BLAS 
"/usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3" 

Graphics external software:

                   cairo                  cairoFT                    pango 
                "1.18.0"                       ""                 "1.52.1" 
                  libpng                     jpeg                  libtiff 
                "1.6.43"                    "8.0" "LIBTIFF, Version 4.5.1" 

Numerical characteristics of the machine:

               double.eps            double.neg.eps               double.xmin 
             2.220446e-16              1.110223e-16             2.225074e-308 
              double.xmax               double.base             double.digits 
            1.797693e+308              2.000000e+00              5.300000e+01 
          double.rounding              double.guard         double.ulp.digits 
             5.000000e+00              0.000000e+00             -5.200000e+01 
    double.neg.ulp.digits           double.exponent            double.min.exp 
            -5.300000e+01              1.100000e+01             -1.022000e+03 
           double.max.exp               integer.max               sizeof.long 
             1.024000e+03              2.147484e+09              8.000000e+00 
          sizeof.longlong         sizeof.longdouble            sizeof.pointer 
             8.000000e+00              1.600000e+01              8.000000e+00 
            sizeof.time_t            longdouble.eps        longdouble.neg.eps 
             8.000000e+00              1.084202e-19              5.421011e-20 
        longdouble.digits       longdouble.rounding          longdouble.guard 
             6.400000e+01              5.000000e+00              0.000000e+00 
    longdouble.ulp.digits longdouble.neg.ulp.digits       longdouble.exponent 
            -6.300000e+01             -6.400000e+01              1.500000e+01 
       longdouble.min.exp        longdouble.max.exp 
            -1.638200e+04              1.638400e+04 

Random number generation process:

[1] "Mersenne-Twister" "Inversion"        "Rejection"       

Information about the environment

Environmental and options variables affect how package checks and software in it might behave. Here is the environmental variables when running this report

_R_CHECK_SYSTEM_CLOCK_
                        FALSE
ACCEPT_EULA             Y
ACTIONS_RUNNER_ACTION_ARCHIVE_CACHE
                        /opt/actionarchivecache
AGENT_TOOLSDIRECTORY    /opt/hostedtoolcache
ANDROID_HOME            /usr/local/lib/android/sdk
ANDROID_NDK             /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_HOME        /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_LATEST_HOME
                        /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_ROOT        /usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_SDK_ROOT        /usr/local/lib/android/sdk
ANT_HOME                /usr/share/ant
AZURE_EXTENSION_DIR     /opt/az/azcliextensions
BOOTSTRAP_HASKELL_NONINTERACTIVE
                        1
BUNDLE_EXT              linux-amd64.deb
CHROME_BIN              /usr/bin/google-chrome
CHROMEWEBDRIVER         /usr/local/share/chromedriver-linux64
CI                      true
CONDA                   /usr/share/miniconda
DEBIAN_FRONTEND         noninteractive
DENO_DOM_PLUGIN         /opt/quarto/bin/tools/x86_64/deno_dom/libplugin.so
DENO_NO_UPDATE_CHECK    1
DENO_TLS_CA_STORE       system,mozilla
DEPLOYMENT_BASEPATH     /opt/runner
DOTNET_MULTILEVEL_LOOKUP
                        0
DOTNET_NOLOGO           1
DOTNET_SKIP_FIRST_TIME_EXPERIENCE
                        1
EDGEWEBDRIVER           /usr/local/share/edge_driver
EDITOR                  vi
GECKOWEBDRIVER          /usr/local/share/gecko_driver
GHCUP_INSTALL_BASE_PREFIX
                        /usr/local
GITHUB_ACTION           __run
GITHUB_ACTION_REF       
GITHUB_ACTION_REPOSITORY
                        
GITHUB_ACTIONS          true
GITHUB_ACTOR            llrs-roche
GITHUB_ACTOR_ID         185338939
GITHUB_API_URL          https://api.github.com
GITHUB_BASE_REF         
GITHUB_ENV              /home/runner/work/_temp/_runner_file_commands/set_env_6ba12b84-2f44-4ad5-be34-dae80230865f
GITHUB_EVENT_NAME       schedule
GITHUB_EVENT_PATH       /home/runner/work/_temp/_github_workflow/event.json
GITHUB_GRAPHQL_URL      https://api.github.com/graphql
GITHUB_HEAD_REF         
GITHUB_JOB              main
GITHUB_OUTPUT           /home/runner/work/_temp/_runner_file_commands/set_output_6ba12b84-2f44-4ad5-be34-dae80230865f
GITHUB_PATH             /home/runner/work/_temp/_runner_file_commands/add_path_6ba12b84-2f44-4ad5-be34-dae80230865f
GITHUB_REF              refs/heads/main
GITHUB_REF_NAME         main
GITHUB_REF_PROTECTED    false
GITHUB_REF_TYPE         branch
GITHUB_REPOSITORY       pharmaR/pharmapkgs
GITHUB_REPOSITORY_ID    798326913
GITHUB_REPOSITORY_OWNER
                        pharmaR
GITHUB_REPOSITORY_OWNER_ID
                        42115094
GITHUB_RETENTION_DAYS   90
GITHUB_RUN_ATTEMPT      1
GITHUB_RUN_ID           13351230359
GITHUB_RUN_NUMBER       93
GITHUB_SERVER_URL       https://github.com
GITHUB_SHA              b7796ef4941f135c4d61c83d399bb9fa3a477379
GITHUB_STATE            /home/runner/work/_temp/_runner_file_commands/save_state_6ba12b84-2f44-4ad5-be34-dae80230865f
GITHUB_STEP_SUMMARY     /home/runner/work/_temp/_runner_file_commands/step_summary_6ba12b84-2f44-4ad5-be34-dae80230865f
GITHUB_TRIGGERING_ACTOR
                        llrs-roche
GITHUB_WORKFLOW         Update package repositories
GITHUB_WORKFLOW_REF     pharmaR/pharmapkgs/.github/workflows/update-repos.yml@refs/heads/main
GITHUB_WORKFLOW_SHA     b7796ef4941f135c4d61c83d399bb9fa3a477379
GITHUB_WORKSPACE        /home/runner/work/pharmapkgs/pharmapkgs
GOROOT_1_21_X64         /opt/hostedtoolcache/go/1.21.13/x64
GOROOT_1_22_X64         /opt/hostedtoolcache/go/1.22.12/x64
GOROOT_1_23_X64         /opt/hostedtoolcache/go/1.23.6/x64
GRADLE_HOME             /usr/share/gradle-8.12.1
HOME                    /home/runner
HOMEBREW_CLEANUP_PERIODIC_FULL_DAYS
                        3650
HOMEBREW_NO_AUTO_UPDATE
                        1
ImageOS                 ubuntu24
ImageVersion            20250209.1.0
INVOCATION_ID           cea0ff53850b49ce839e8b7d02d05041
JAVA_HOME               /usr/lib/jvm/temurin-17-jdk-amd64
JAVA_HOME_11_X64        /usr/lib/jvm/temurin-11-jdk-amd64
JAVA_HOME_17_X64        /usr/lib/jvm/temurin-17-jdk-amd64
JAVA_HOME_21_X64        /usr/lib/jvm/temurin-21-jdk-amd64
JAVA_HOME_8_X64         /usr/lib/jvm/temurin-8-jdk-amd64
JOURNAL_STREAM          8:7454
LANG                    C.UTF-8
LD_LIBRARY_PATH         /opt/R/4.4.2/lib/R/lib:/usr/local/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/temurin-17-jdk-amd64/lib/server:/opt/R/4.4.2/lib/R/lib:/usr/local/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/temurin-17-jdk-amd64/lib/server
LN_S                    ln -s
LOGGER_LOG_LEVEL        DEBUG
MAKE                    make
MEMORY_PRESSURE_WATCH   /sys/fs/cgroup/system.slice/runner-provisioner.service/memory.pressure
MEMORY_PRESSURE_WRITE   c29tZSAyMDAwMDAgMjAwMDAwMAA=
NOT_CRAN                true
NVM_DIR                 /home/runner/.nvm
PAGER                   /usr/bin/pager
PATH                    /snap/bin:/home/runner/.local/bin:/opt/pipx_bin:/home/runner/.cargo/bin:/home/runner/.config/composer/vendor/bin:/usr/local/.ghcup/bin:/home/runner/.dotnet/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
PERFLOG_LOCATION_SETTING
                        RUNNER_PERFLOG
PHARMAPKGS_EXCLUDED_METRICS
                        assess_covr_coverage,assess_r_cmd_check
PHARMAPKGS_LIMIT        1000
PHARMAPKGS_PLATFORM     ubuntu-22.04
PHARMAPKGS_R_VERSION    4.4
PHARMAPKGS_REMOTE_REPO
                        https://cloud.r-project.org/
PIPX_BIN_DIR            /opt/pipx_bin
PIPX_HOME               /opt/pipx
PKGCACHE_HTTP_VERSION   2
PKGLOAD_PARENT_TEMPDIR
                        /tmp/RtmpCk6Ofc
POWERSHELL_DISTRIBUTION_CHANNEL
                        GitHub-Actions-ubuntu24
PROCESSX_PS1bc329d9b3bf_1739681210
                        YES
PWD                     /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_BIN_PATH         /opt/quarto/bin
QUARTO_DENO             /opt/quarto/bin/tools/x86_64/deno
QUARTO_DOCUMENT_PATH    /home/runner/work/pharmapkgs/pharmapkgs/inst/report
QUARTO_PROFILE          
QUARTO_PROJECT_DIR      /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_PROJECT_ROOT     /home/runner/work/pharmapkgs/pharmapkgs
QUARTO_ROOT             /
QUARTO_SHARE_PATH       /opt/quarto/share
R_ARCH                  
R_BROWSER               xdg-open
R_BZIPCMD               /usr/bin/bzip2
R_DOC_DIR               /opt/R/4.4.2/lib/R/doc
R_GZIPCMD               /usr/bin/gzip
R_HOME                  /opt/R/4.4.2/lib/R
R_INCLUDE_DIR           /opt/R/4.4.2/lib/R/include
R_LIB_FOR_PAK           /opt/R/4.4.2/lib/R/site-library
R_LIBS_SITE             /opt/R/4.4.2/lib/R/site-library
R_LIBS_USER             /home/runner/work/_temp/Library
R_PAPERSIZE             letter
R_PAPERSIZE_USER        letter
R_PDFVIEWER             /usr/bin/xdg-open
R_PLATFORM              x86_64-pc-linux-gnu
R_PRINTCMD              /usr/bin/lpr
R_RD4PDF                times,inconsolata,hyper
R_SESSION_TMPDIR        /tmp/Rtmp8wN4Gi
R_SHARE_DIR             /opt/R/4.4.2/lib/R/share
R_STRIP_SHARED_LIB      strip --strip-unneeded
R_STRIP_STATIC_LIB      strip --strip-debug
R_TEXI2DVICMD           /usr/bin/texi2dvi
R_UNZIPCMD              /usr/bin/unzip
R_ZIPCMD                /usr/bin/zip
RUNNER_ARCH             X64
RUNNER_ENVIRONMENT      github-hosted
RUNNER_NAME             GitHub Actions 9
RUNNER_OS               Linux
RUNNER_PERFLOG          /home/runner/perflog
RUNNER_TEMP             /home/runner/work/_temp
RUNNER_TOOL_CACHE       /opt/hostedtoolcache
RUNNER_TRACKING_ID      github_d0120492-4873-4b13-9ede-fb6d0d82420b
RUNNER_USER             runner
RUNNER_WORKSPACE        /home/runner/work/pharmapkgs
SED                     /usr/bin/sed
SELENIUM_JAR_PATH       /usr/share/java/selenium-server.jar
SGX_AESM_ADDR           1
SHLVL                   1
STATS_D                 true
STATS_D_D               true
STATS_D_TC              true
STATS_EXT               true
STATS_EXTP              https://provjobdprod.z13.web.core.windows.net/settings/provjobdsettings-latest/provjobd.data
STATS_PIP               false
STATS_RDCL              true
STATS_TRP               true
STATS_UE                true
STATS_V3PS              true
STATS_VMD               true
STATS_VMFE              true
SWIFT_PATH              /usr/share/swift/usr/bin
SYSTEMD_EXEC_PID        829
TAR                     /usr/bin/tar
TZ                      UTC
USER                    runner
VCPKG_INSTALLATION_ROOT
                        /usr/local/share/vcpkg
XDG_CONFIG_HOME         /home/runner/.config
XDG_RUNTIME_DIR         /run/user/1001

These are the options set to generate the report:

$add.smooth
[1] TRUE

$bitmapType
[1] "cairo"

$browser
[1] "xdg-open"

$browserNLdisabled
[1] FALSE

$callr.condition_handler_cli_message
function (msg) 
{
    custom_handler <- getOption("cli.default_handler")
    if (is.function(custom_handler)) {
        custom_handler(msg)
    }
    else {
        cli_server_default(msg)
    }
}
<bytecode: 0x56126719a910>
<environment: namespace:cli>

$catch.script.errors
[1] FALSE

$CBoundsCheck
[1] FALSE

$check.bounds
[1] FALSE

$citation.bibtex.max
[1] 1

$continue
[1] "+ "

$contrasts
        unordered           ordered 
"contr.treatment"      "contr.poly" 

$covr.record_tests
[1] TRUE

$defaultPackages
[1] "datasets"  "utils"     "grDevices" "graphics"  "stats"     "methods"  

$demo.ask
[1] "default"

$deparse.cutoff
[1] 60

$device
function (width = 7, height = 7, ...) 
{
    grDevices::pdf(NULL, width, height, ...)
}
<bytecode: 0x5612668e5698>
<environment: namespace:knitr>

$device.ask.default
[1] FALSE

$digits
[1] 7

$dvipscmd
[1] "dvips"

$echo
[1] FALSE

$editor
[1] "vi"

$encoding
[1] "native.enc"

$example.ask
[1] "default"

$expressions
[1] 5000

$help.search.types
[1] "vignette" "demo"     "help"    

$help.try.all.packages
[1] FALSE

$htmltools.preserve.raw
[1] TRUE

$HTTPUserAgent
[1] "R/4.4.2 R (4.4.2 x86_64-pc-linux-gnu x86_64 linux-gnu) on GitHub Actions"

$internet.info
[1] 2

$keep.parse.data
[1] TRUE

$keep.parse.data.pkgs
[1] FALSE

$keep.source
[1] FALSE

$keep.source.pkgs
[1] FALSE

$knitr.in.progress
[1] TRUE

$locatorBell
[1] TRUE

$mailer
[1] "mailto"

$matprod
[1] "default"

$max.contour.segments
[1] 25000

$max.print
[1] 99999

$menu.graphics
[1] TRUE

$na.action
[1] "na.omit"

$Ncpus
[1] 1

$nwarnings
[1] 50

$OutDec
[1] "."

$pager
[1] "/opt/R/4.4.2/lib/R/bin/pager"

$papersize
[1] "letter"

$PCRE_limit_recursion
[1] NA

$PCRE_study
[1] FALSE

$PCRE_use_JIT
[1] TRUE

$pdfviewer
[1] "/usr/bin/xdg-open"

$pkgType
[1] "source"

$printcmd
[1] "/usr/bin/lpr"

$prompt
[1] "> "

$repos
                      CRAN 
"https://cran.rstudio.com" 

$rl_word_breaks
[1] " \t\n\"\\'`><=%;,|&{()}"

$rlang_trace_top_env
<environment: R_GlobalEnv>

$scipen
[1] 0

$show.coef.Pvalues
[1] TRUE

$show.error.messages
[1] TRUE

$show.signif.stars
[1] TRUE

$showErrorCalls
[1] TRUE

$showNCalls
[1] 50

$showWarnCalls
[1] FALSE

$str
$str$strict.width
[1] "no"

$str$digits.d
[1] 3

$str$vec.len
[1] 4

$str$list.len
[1] 99

$str$deparse.lines
NULL

$str$drop.deparse.attr
[1] TRUE

$str$formatNum
function (x, ...) 
format(x, trim = TRUE, drop0trailing = TRUE, ...)
<environment: 0x561266672520>


$str.dendrogram.last
[1] "`"

$texi2dvi
[1] "/usr/bin/texi2dvi"

$tikzMetricsDictionary
[1] "validation_report_CNAIM_v2.1.4-tikzDictionary"

$timeout
[1] 60

$try.outFile
A connection with                    
description ""      
class       "file"  
mode        "w+b"   
text        "binary"
opened      "opened"
can read    "yes"   
can write   "yes"   

$ts.eps
[1] 1e-05

$ts.S.compat
[1] FALSE

$unzip
[1] "/usr/bin/unzip"

$useFancyQuotes
[1] FALSE

$verbose
[1] FALSE

$warn
[1] 0

$warning.length
[1] 1000

$warnPartialMatchArgs
[1] FALSE

$warnPartialMatchAttr
[1] FALSE

$warnPartialMatchDollar
[1] FALSE

$width
[1] 80