Validation Report - BayesTools@0.2.18
Context
This report is fully automated and builds on rhub/ref-image image. Documents the installation of this package on an open source R environment, focusing on:
- Installation environment description
- Testing coverage
It is limited to assess whether unit tests and documentation are present and can execute without error. An assessment would be required that the tests and documentation are meaningful.
Package BayesTools
Metric based risk assessment
The following metrics are derived from the riskmetric R package.
| has_news | 1 |
| news_current | TRUE |
| exported_namespace | 141 |
| has_vignettes | 4 |
| export_help | 141 |
| has_website | TRUE |
| has_maintainer | František Bartoš f.bartos96@gmail.com |
| bugs_status | subscript out of bounds |
| has_bug_reports_url | 1 |
| downloads_1yr | 13618 |
| reverse_dependencies | 3 |
| has_examples | 1 |
| dependencies | 10 |
| license | GPL-3 |
Package general assessment: Coverage, check results, size, download the last year, reverse dependencies and number of dependencies.
Dependencies
Overall the package has these dependencies:
| package | type | |
|---|---|---|
| 1 | stats | Depends |
| 2 | graphics | Imports |
| 3 | extraDistr | Imports |
| 4 | mvtnorm | Imports |
| 5 | coda | Imports |
| 6 | bridgesampling | Imports |
| 7 | parallel | Imports |
| 8 | ggplot2 | Imports |
| 9 | Rdpack | Imports |
| 10 | rlang | Imports |
Package dependencies
Reverse dependencies
Overall the package has 3 reverse dependencies:
RoBMA, RoBSA, RoBTT
Namespace
Overall the package has 141 exported objects. 141 are documented:
add_column as_marginal_inference
TRUE TRUE
as_mixed_posteriors bridgesampling_object
TRUE TRUE
ccdf cdf
TRUE TRUE
check_bool check_char
TRUE TRUE
check_int check_list
TRUE TRUE
check_real compute_inference
TRUE TRUE
contr.independent contr.meandif
TRUE TRUE
contr.orthonormal dmpoint
TRUE TRUE
dpoint ensemble_diagnostics_empty_table
TRUE TRUE
ensemble_diagnostics_table ensemble_estimates_empty_table
TRUE TRUE
ensemble_estimates_table ensemble_inference
TRUE TRUE
ensemble_inference_empty_table ensemble_inference_table
TRUE TRUE
ensemble_summary_empty_table ensemble_summary_table
TRUE TRUE
format_BF format_parameter_names
TRUE TRUE
geom_prior geom_prior_list
TRUE TRUE
inclusion_BF interpret
TRUE TRUE
interpret2 is.prior
TRUE TRUE
is.prior.discrete is.prior.factor
TRUE TRUE
is.prior.independent is.prior.meandif
TRUE TRUE
is.prior.mixture is.prior.none
TRUE TRUE
is.prior.orthonormal is.prior.PEESE
TRUE TRUE
is.prior.PET is.prior.point
TRUE TRUE
is.prior.simple is.prior.spike_and_slab
TRUE TRUE
is.prior.treatment is.prior.vector
TRUE TRUE
is.prior.weightfunction JAGS_add_priors
TRUE TRUE
JAGS_bridgesampling JAGS_bridgesampling_posterior
TRUE TRUE
JAGS_check_and_list_autofit_settings JAGS_check_and_list_fit_settings
TRUE TRUE
JAGS_check_convergence JAGS_diagnostics
TRUE TRUE
JAGS_diagnostics_autocorrelation JAGS_diagnostics_density
TRUE TRUE
JAGS_diagnostics_trace JAGS_estimates_empty_table
TRUE TRUE
JAGS_estimates_table JAGS_evaluate_formula
TRUE TRUE
JAGS_extend JAGS_fit
TRUE TRUE
JAGS_formula JAGS_get_inits
TRUE TRUE
JAGS_inference_empty_table JAGS_inference_table
TRUE TRUE
JAGS_marglik_parameters JAGS_marglik_parameters_formula
TRUE TRUE
JAGS_marglik_priors JAGS_marglik_priors_formula
TRUE TRUE
JAGS_parameter_names JAGS_summary_table
TRUE TRUE
JAGS_to_monitor lines_prior_list
TRUE TRUE
lpdf marginal_estimates_table
TRUE TRUE
marginal_inference marginal_posterior
TRUE TRUE
mccdf mcdf
TRUE TRUE
mdone.sided mdone.sided_fixed
TRUE TRUE
mdtwo.sided mdtwo.sided_fixed
TRUE TRUE
mix_posteriors mlpdf
TRUE TRUE
model_summary_empty_table model_summary_table
TRUE TRUE
models_inference mpdf
TRUE TRUE
mpone.sided mpone.sided_fixed
TRUE TRUE
mptwo.sided mptwo.sided_fixed
TRUE TRUE
mqone.sided mqone.sided_fixed
TRUE TRUE
mqtwo.sided mqtwo.sided_fixed
TRUE TRUE
mquant pdf
TRUE TRUE
plot_marginal plot_models
TRUE TRUE
plot_posterior plot_prior_list
TRUE TRUE
pmpoint ppoint
TRUE TRUE
prior prior_factor
TRUE TRUE
prior_informed prior_informed_medicine_names
TRUE TRUE
prior_mixture prior_none
TRUE TRUE
prior_PEESE prior_PET
TRUE TRUE
prior_spike_and_slab prior_weightfunction
TRUE TRUE
qmpoint qpoint
TRUE TRUE
quant remove_column
TRUE TRUE
rmpoint rng
TRUE TRUE
rone.sided rone.sided_fixed
TRUE TRUE
rpoint rtwo.sided
TRUE TRUE
rtwo.sided_fixed runjags_estimates_empty_table
TRUE TRUE
runjags_estimates_table runjags_inference_empty_table
TRUE TRUE
runjags_inference_table Savage_Dickey_BF
TRUE TRUE
sd stan_estimates_table
TRUE TRUE
transform_factor_samples transform_meandif_samples
TRUE TRUE
transform_orthonormal_samples var
TRUE TRUE
weightfunctions_mapping
TRUE Examples
There are 71 help pages with examples, from 71 (100.00 %).
NEWS
The package has NEWS file and it is current.
License
The package uses .
Installation environment
System Info
| Field | Value |
|---|---|
| Image | rhub/ref-image |
| OS | Ubuntu 24.04.1 LTS |
| Platform | x86_64-pc-linux-gnu |
| System | x86_64, linux-gnu |
| Execution Time | 2025-02-15 03:41:55 UTC |
System information. Table about the system used to check the package.
R Session Info
Information about the R environment and capabilities:
R version 4.4.2 (2024-10-31)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 24.04.1 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so; LAPACK version 3.12.0
locale:
[1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8
[4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8
[7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C
time zone: UTC
tzcode source: system (glibc)
attached base packages:
[1] tools stats graphics grDevices utils datasets methods
[8] base
loaded via a namespace (and not attached):
[1] riskreports_0.0.0.9003 compiler_4.4.2 fastmap_1.2.0
[4] cli_3.6.4 htmltools_0.5.8.1 yaml_2.3.10
[7] rmarkdown_2.29 knitr_1.49 jsonlite_1.8.9
[10] xfun_0.50 digest_0.6.37 rlang_1.1.5
[13] evaluate_1.0.3 Platform used:
OS.type file.sep dynlib.ext GUI endian pkgType path.sep
"unix" "/" ".so" "X11" "little" "source" ":"
r_arch
"" R’s capabilities:
jpeg png tiff tcltk X11 aqua
TRUE TRUE TRUE TRUE FALSE FALSE
http/ftp sockets libxml fifo cledit iconv
TRUE TRUE FALSE TRUE FALSE TRUE
NLS Rprof profmem cairo ICU long.double
TRUE TRUE TRUE TRUE TRUE TRUE
libcurl
TRUE External software:
zlib
"1.3"
bzlib
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xz
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libdeflate
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PCRE
"10.42 2022-12-11"
ICU
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TRE
"TRE 0.8.0 R_fixes (BSD)"
iconv
"glibc 2.39"
readline
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BLAS
"/usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3" Graphics external software:
cairo cairoFT pango
"1.18.0" "" "1.52.1"
libpng jpeg libtiff
"1.6.43" "8.0" "LIBTIFF, Version 4.5.1" Numerical characteristics of the machine:
double.eps double.neg.eps double.xmin
2.220446e-16 1.110223e-16 2.225074e-308
double.xmax double.base double.digits
1.797693e+308 2.000000e+00 5.300000e+01
double.rounding double.guard double.ulp.digits
5.000000e+00 0.000000e+00 -5.200000e+01
double.neg.ulp.digits double.exponent double.min.exp
-5.300000e+01 1.100000e+01 -1.022000e+03
double.max.exp integer.max sizeof.long
1.024000e+03 2.147484e+09 8.000000e+00
sizeof.longlong sizeof.longdouble sizeof.pointer
8.000000e+00 1.600000e+01 8.000000e+00
sizeof.time_t longdouble.eps longdouble.neg.eps
8.000000e+00 1.084202e-19 5.421011e-20
longdouble.digits longdouble.rounding longdouble.guard
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longdouble.ulp.digits longdouble.neg.ulp.digits longdouble.exponent
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longdouble.min.exp longdouble.max.exp
-1.638200e+04 1.638400e+04 Random number generation process:
[1] "Mersenne-Twister" "Inversion" "Rejection" Information about the environment
Environmental and options variables affect how package checks and software in it might behave. Here is the environmental variables when running this report
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