Validation Report - BayesERtools@0.2.1
Context
This report is fully automated and builds on rhub/ref-image image. Documents the installation of this package on an open source R environment, focusing on:
- Installation environment description
- Testing coverage
It is limited to assess whether unit tests and documentation are present and can execute without error. An assessment would be required that the tests and documentation are meaningful.
Package BayesERtools
Metric based risk assessment
The following metrics are derived from the riskmetric R package.
| has_news | 1 |
| news_current | TRUE |
| exported_namespace | 48 |
| has_vignettes | 4 |
| export_help | 48 |
| has_website | TRUE |
| has_maintainer | Kenta Yoshida yoshida.kenta.6@gmail.com |
| bugs_status | package DESCRIPTION does not have a BugReports field |
| has_bug_reports_url | 0 |
| downloads_1yr | 100 |
| reverse_dependencies | 0 |
| has_examples | 1 |
| dependencies | 13 |
| license | Apache License 2.0 |
Package general assessment: Coverage, check results, size, download the last year, reverse dependencies and number of dependencies.
Dependencies
Overall the package has these dependencies:
| package | type | |
|---|---|---|
| 1 | dplyr | Imports |
| 2 | tidyr | Imports |
| 3 | purrr | Imports |
| 4 | ggplot2 | Imports |
| 5 | gt | Imports |
| 6 | cli | Imports |
| 7 | rlang | Imports |
| 8 | rstanarm | Imports |
| 9 | rstanemax (>= 0.1.8) | Imports |
| 10 | loo | Imports |
| 11 | tidybayes | Imports |
| 12 | bayestestR | Imports |
| 13 | posterior | Imports |
Package dependencies
Reverse dependencies
Overall the package has 0 reverse dependencies:
Namespace
Overall the package has 48 exported objects. 48 are documented:
.dev_ermod_refmodel .select_cov_projpred
TRUE TRUE
as_draws as_draws_array
TRUE TRUE
as_draws_df as_draws_list
TRUE TRUE
as_draws_matrix as_draws_rvars
TRUE TRUE
build_spec_coveff build_spec_coveff_one_variable
TRUE TRUE
calc_ersim_med_qi dev_ermod_bin
TRUE TRUE
dev_ermod_bin_cov_sel dev_ermod_bin_emax
TRUE TRUE
dev_ermod_bin_emax_exp_sel dev_ermod_bin_exp_sel
TRUE TRUE
dev_ermod_emax dev_ermod_emax_exp_sel
TRUE TRUE
dev_ermod_lin dev_ermod_lin_cov_sel
TRUE TRUE
dev_ermod_lin_exp_sel eval_ermod
TRUE TRUE
extract_coef_exp_ci extract_data
TRUE TRUE
extract_exp_sel_comp extract_exp_sel_list_model
TRUE TRUE
extract_mod extract_var_cov
TRUE TRUE
extract_var_exposure extract_var_resp
TRUE TRUE
extract_var_selected loo
TRUE TRUE
p_direction plot_coveff
TRUE TRUE
plot_er plot_er_exp_sel
TRUE TRUE
plot_er_gof plot_submod_performance
TRUE TRUE
plot_var_ranking print_coveff
TRUE TRUE
replace_spec_coveff run_kfold_cv
TRUE TRUE
sim_coveff sim_er
TRUE TRUE
sim_er_curve sim_er_curve_marg
TRUE TRUE
sim_er_new_exp sim_er_new_exp_marg
TRUE TRUE Examples
There are 34 help pages with examples, from 34 (100.00 %).
NEWS
The package has NEWS file and it is current.
License
The package uses .
Installation environment
System Info
| Field | Value |
|---|---|
| Image | rhub/ref-image |
| OS | Ubuntu 24.04.1 LTS |
| Platform | x86_64-pc-linux-gnu |
| System | x86_64, linux-gnu |
| Execution Time | 2025-02-15 03:34:12 UTC |
System information. Table about the system used to check the package.
R Session Info
Information about the R environment and capabilities:
R version 4.4.2 (2024-10-31)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 24.04.1 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so; LAPACK version 3.12.0
locale:
[1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8
[4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8
[7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C
time zone: UTC
tzcode source: system (glibc)
attached base packages:
[1] tools stats graphics grDevices utils datasets methods
[8] base
loaded via a namespace (and not attached):
[1] riskreports_0.0.0.9003 compiler_4.4.2 fastmap_1.2.0
[4] cli_3.6.4 htmltools_0.5.8.1 yaml_2.3.10
[7] rmarkdown_2.29 knitr_1.49 jsonlite_1.8.9
[10] xfun_0.50 digest_0.6.37 rlang_1.1.5
[13] evaluate_1.0.3 Platform used:
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"unix" "/" ".so" "X11" "little" "source" ":"
r_arch
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jpeg png tiff tcltk X11 aqua
TRUE TRUE TRUE TRUE FALSE FALSE
http/ftp sockets libxml fifo cledit iconv
TRUE TRUE FALSE TRUE FALSE TRUE
NLS Rprof profmem cairo ICU long.double
TRUE TRUE TRUE TRUE TRUE TRUE
libcurl
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bzlib
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xz
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PCRE
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TRE
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BLAS
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libpng jpeg libtiff
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double.max.exp integer.max sizeof.long
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-1.638200e+04 1.638400e+04 Random number generation process:
[1] "Mersenne-Twister" "Inversion" "Rejection" Information about the environment
Environmental and options variables affect how package checks and software in it might behave. Here is the environmental variables when running this report
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